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authorRicardo Wurmus <rekado@elephly.net>2019-03-27 11:32:08 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-27 11:32:08 +0100
commit58d8225ddba23245421bdc0cc9d8b138bc23b0ea (patch)
treef23f3ac09c808504000d8ac7be67a07a2f1e4e75
parent5f1e31094d390a85bb91e8df1efbcb2dd2e39cf4 (diff)
downloadguix-58d8225ddba23245421bdc0cc9d8b138bc23b0ea.tar
guix-58d8225ddba23245421bdc0cc9d8b138bc23b0ea.tar.gz
gnu: trim-galore: Add pigz.
* gnu/packages/bioinformatics.scm (trim-galore)[inputs]: Add pigz. [arguments]: Embed reference to pigz.
-rw-r--r--gnu/packages/bioinformatics.scm7
1 files changed, 6 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3f94ef54cd..a0b44e5bbb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10920,7 +10920,11 @@ with narrow binding events such as transcription factor ChIP-seq.")
(("\"gunzip")
(string-append "\""
(assoc-ref inputs "gzip")
- "/bin/gunzip")))
+ "/bin/gunzip"))
+ (("\"pigz")
+ (string-append "\""
+ (assoc-ref inputs "pigz")
+ "/bin/pigz")))
#t))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
@@ -10932,6 +10936,7 @@ with narrow binding events such as transcription factor ChIP-seq.")
(inputs
`(("gzip" ,gzip)
("perl" ,perl)
+ ("pigz" ,pigz)
("cutadapt" ,cutadapt)))
(native-inputs
`(("unzip" ,unzip)))