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| author | Efraim Flashner <efraim@flashner.co.il> | 2017-08-15 10:30:33 +0300 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2017-08-15 10:31:20 +0300 |
| commit | 3837108e403d385cd0b616fb601b9942c8bb213f (patch) | |
| tree | 3a8d0af86f7826e0006d9283bc0b5d3af59068e1 | |
| parent | 2d430f29231d0d817459d86e0fe15089372e9547 (diff) | |
| download | guix-3837108e403d385cd0b616fb601b9942c8bb213f.tar guix-3837108e403d385cd0b616fb601b9942c8bb213f.tar.gz | |
gnu: bcftools: Fix building on aarch64.
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file.
* gnu/packages/bioinformatics.scm (bcftools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
| -rw-r--r-- | gnu/local.mk | 1 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 1 | ||||
| -rw-r--r-- | gnu/packages/patches/bcftools-regidx-unsigned-char.patch | 16 |
3 files changed, 18 insertions, 0 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index b15a16b6bc..2ab6901d8a 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -527,6 +527,7 @@ dist_patch_DATA = \ %D%/packages/patches/awesome-reproducible-png.patch \ %D%/packages/patches/azr3.patch \ %D%/packages/patches/bash-completion-directories.patch \ + %D%/packages/patches/bcftools-regidx-unsigned-char.patch \ %D%/packages/patches/binutils-ld-new-dtags.patch \ %D%/packages/patches/binutils-loongson-workaround.patch \ %D%/packages/patches/binutils-mips-bash-bug.patch \ diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9d64294e48..17cd214a33 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -311,6 +311,7 @@ BAM files.") (sha256 (base32 "0093hkkvxmbwfaa7905s6185jymynvg42kq6sxv7fili11l5mxwz")) + (patches (search-patches "bcftools-regidx-unsigned-char.patch")) (modules '((guix build utils))) (snippet ;; Delete bundled htslib. diff --git a/gnu/packages/patches/bcftools-regidx-unsigned-char.patch b/gnu/packages/patches/bcftools-regidx-unsigned-char.patch new file mode 100644 index 0000000000..af5bc160f5 --- /dev/null +++ b/gnu/packages/patches/bcftools-regidx-unsigned-char.patch @@ -0,0 +1,16 @@ +Description: Fix test-regidx argument parsing on archs with unsigned char + On architectures where char is unsigned "c >= 0" was always true. +Author: Adrian Bunk <bunk@debian.org> +Bug-Debian: https://bugs.debian.org/865060 + +--- a/test/test-regidx.c ++++ b/test/test-regidx.c +@@ -336,7 +336,7 @@ + {"seed",1,0,'s'}, + {0,0,0,0} + }; +- char c; ++ int c; + int seed = (int)time(NULL); + while ((c = getopt_long(argc, argv, "hvs:",loptions,NULL)) >= 0) + { |