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author | pimi <madalinionel.patrascu@mdc-berlin.de> | 2018-10-02 16:16:45 -0400 |
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committer | Leo Famulari <leo@famulari.name> | 2018-10-02 16:17:00 -0400 |
commit | 1ddb2b5c1ca1e18924cbb969c974a0e8d8e54010 (patch) | |
tree | f9b93c964365507aa6f4827012f8dd515e3ffa6d | |
parent | 3f0f49d70877df6c829b443830de99e0e1e1f6bc (diff) | |
download | guix-1ddb2b5c1ca1e18924cbb969c974a0e8d8e54010.tar guix-1ddb2b5c1ca1e18924cbb969c974a0e8d8e54010.tar.gz |
gnu: Add r-absim.
* gnu/packages/cran.scm (r-absim): New variable.
-rw-r--r-- | gnu/packages/cran.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b567fdc0ce..4da1664c67 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6131,3 +6131,31 @@ that are part of an activity bout, and find the maximum 10-minute average count value. The functions are generally very flexible, allowing for a variety of algorithms to be implemented.") (license license:gpl3))) + +(define-public r-absim + (package + (name "r-absim") + (version "0.2.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "AbSim" version)) + (sha256 + (base32 "16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m")))) + (properties `((upstream-name . "AbSim"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-powerlaw" ,r-powerlaw))) + (home-page "https://cran.r-project.org/web/packages/AbSim/") + (synopsis "Time resolved simulations of antibody repertoires") + (description + "This package provides simulation methods for the evolution of antibody repertoires. + The heavy and light chain variable region of both human and C57BL/6 mice can +be simulated in a time-dependent fashion. Both single lineages using one set of +V-, D-, and J-genes or full repertoires can be simulated. The algorithm begins +with an initial V-D-J recombination event, starting the first phylogenetic tree. + Upon completion, the main loop of the algorithm begins, with each iteration +representing one simulated time step. Various mutation events are possible at +each time step, contributing to a diverse final repertoire.") + (license license:gpl2))) |