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| author | zimoun <zimon.toutoune@gmail.com> | 2022-01-18 18:54:18 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-01-21 15:53:18 +0100 |
| commit | ce291b193cadbd6926ddf31af2ac6ed8bd607f44 (patch) | |
| tree | adb745b18b74140787ecdf0f42bb0ce2215360b0 | |
| parent | dac6b53c7e147f28e3834603b002b47ced092b47 (diff) | |
| download | guix-ce291b193cadbd6926ddf31af2ac6ed8bd607f44.tar guix-ce291b193cadbd6926ddf31af2ac6ed8bd607f44.tar.gz | |
gnu: Add r-scseqcomm.
* gnu/packages/bioinformatics.scm (r-scseqcomm): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b0ea34fd6d..d6782f6fe6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7910,6 +7910,56 @@ of transcriptional heterogeneity among single cells.") analyze genomic data resulting from various experiments.") (license license:gpl2))) +(define-public r-scseqcomm + (let ((commit "01076e703999f1a5aa76419d821b50aebe2b777a") + (revision "0")) + (package + (name "r-scseqcomm") + (version (git-version "0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/sysbiobig/scseqcomm") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1fw5si47d6agnz5fibmp2b1sv08pbpwv1j71w57xbav9044i032q")) + ;; Delete bundled dependency. + (modules '((guix build utils))) + (snippet + '(delete-file-recursively "other_deps")))) + (build-system r-build-system) + (inputs + (list r-add2ggplot + r-chorddiag + r-doparallel + r-dplyr + r-foreach + ;;r-grid ;; listed in DESCRIPTION + r-gridextra + r-ggplot2 + r-gtable + r-htmlwidgets + r-igraph + r-matrix + ;;r-methods ;; listed in DESCRIPTION + r-org-hs-eg-db + r-psych + r-rcolorbrewer + r-rlang + r-scico + r-tidygraph + r-topgo)) + (native-inputs + (list r-knitr)) + (home-page "https://gitlab.com/sysbiobig/scseqcomm") + (synopsis "Inter- and intra- cellular signaling from single cell RNA-seq") + (description "This package is tools for analysing intercellular and +intracellular signaling from single cell RNA-seq (scRNA-seq) data.") + (license license:gpl3)))) + (define-public r-shaman (let ((commit "d6944e8ac7bd1dbd5c6cec646eafc1d19d0ca96f") (release "2.0") |