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authorRicardo Wurmus <rekado@elephly.net>2018-06-02 12:00:10 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-06-02 13:39:10 +0200
commitd73c5728f345174e9493a25646cd3d1a716fb8b5 (patch)
tree129f5e06c25f0d7dafd92d09c318b62f1628da9f
parentc76e8baf9e57a45c19ccc0134499b493b55ea8a9 (diff)
downloadguix-d73c5728f345174e9493a25646cd3d1a716fb8b5.tar
guix-d73c5728f345174e9493a25646cd3d1a716fb8b5.tar.gz
gnu: r-rhdf5: Update to 2.24.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0. [arguments]: Remove. [propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib. [inputs]: Remove perl.
-rw-r--r--gnu/packages/bioinformatics.scm29
1 files changed, 4 insertions, 25 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9138671d2f..ce4ff64af6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8797,39 +8797,18 @@ of gene-level counts.")
(define-public r-rhdf5
(package
(name "r-rhdf5")
- (version "2.22.0")
+ (version "2.24.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "rhdf5" version))
(sha256
(base32
- "145858qg1xan6imxcbprzq3yn3mdf532aahdr6cibvdjg47hs4c1"))))
+ "15cmmchhk8bnp94gxg0zk9qyzdjx5kv16dzpbnb62mkq7ydmifx6"))))
(build-system r-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'unpack-smallhdf5
- (lambda* (#:key outputs #:allow-other-keys)
- (system* "tar" "-xzvf"
- "src/hdf5source/hdf5small.tgz" "-C" "src/" )
- (substitute* "src/hdf5/configure"
- (("/bin/mv") "mv"))
- ;; Remove timestamp and host system information to make
- ;; the build reproducible.
- (substitute* "src/hdf5/src/libhdf5.settings.in"
- (("Configured on: @CONFIG_DATE@")
- "Configured on: Guix")
- (("Uname information:.*")
- "Uname information: Linux\n")
- ;; Remove unnecessary store reference.
- (("C Compiler:.*")
- "C Compiler: GCC\n"))
- #t)))))
(propagated-inputs
- `(("r-zlibbioc" ,r-zlibbioc)))
+ `(("r-rhdf5lib" ,r-rhdf5lib)))
(inputs
- `(("perl" ,perl)
- ("zlib" ,zlib)))
+ `(("zlib" ,zlib)))
(home-page "https://bioconductor.org/packages/rhdf5")
(synopsis "HDF5 interface to R")
(description