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author | Roel Janssen <roel@gnu.org> | 2020-09-09 17:02:55 +0200 |
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committer | Roel Janssen <roel@gnu.org> | 2020-09-09 17:02:55 +0200 |
commit | 0574446be82ef54b925441e4283bf754a86918a9 (patch) | |
tree | dd124636f1a09bc238600e1ea3c4ff8b9bf943f0 | |
parent | a9401b4c948552d6a5a95bbd295e61871f4c6d74 (diff) | |
download | guix-0574446be82ef54b925441e4283bf754a86918a9.tar guix-0574446be82ef54b925441e4283bf754a86918a9.tar.gz |
gnu: Add r-bisquerna.
* gnu/packages/bioinformatics.scm (r-bisquerna): New variable.
-rw-r--r-- | gnu/packages/bioinformatics.scm | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f8792ef4d4..9f2fd86de2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7923,6 +7923,31 @@ manipulating genomic intervals and variables defined along a genome.") on Bioconductor or which replace R functions.") (license license:artistic2.0))) +(define-public r-bisquerna + (package + (name "r-bisquerna") + (version "1.0.4") + (source (origin + (method url-fetch) + (uri (cran-uri "BisqueRNA" version)) + (sha256 + (base32 + "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2")))) + (properties `((upstream-name . "BisqueRNA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-limsolve" ,r-limsolve))) + (home-page "https://www.biorxiv.org/content/10.1101/669911v1") + (synopsis "Decomposition of Bulk Expression with Single-Cell Sequencing") + (description "This package provides tools to accurately estimate cell type +abundances from heterogeneous bulk expression. A reference-based method +utilizes single-cell information to generate a signature matrix and +transformation of bulk expression for accurate regression based estimates. +A marker-based method utilizes known cell-specific marker genes to measure +relative abundances across samples.") + (license license:gpl3))) + (define-public r-annotationdbi (package (name "r-annotationdbi") |