Merge branch 'master' into core-updates

17 files changed, 107 insertions, 92 deletions

diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 2583cc2018..f253fca57e 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -1265,7 +1265,7 @@ module slots, and the list of I/O ports (e.g. serial, parallel, USB).")
 (define-public acpica
   (package
     (name "acpica")
-    (version "20180508")
+    (version "20180531")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1273,7 +1273,7 @@ module slots, and the list of I/O ports (e.g. serial, parallel, USB).")
                     version ".tar.gz"))
               (sha256
                (base32
-                "05fg4gcgs1jhh5ad71q1dr35vh119g8avjdy806q614yvgcwk3sx"))))
+                "0q7vg1nr51f3rg16vjh4glz361a64r6gpm46fqkl2jf4fq7g43g5"))))
     (build-system gnu-build-system)
     (native-inputs `(("flex" ,flex)
                      ("bison" ,bison)))
@@ -2482,7 +2482,7 @@ make it a perfect utility on modern distros.")
 (define-public thermald
   (package
     (name "thermald")
-    (version "1.7.1")
+    (version "1.7.2")
     (source
      (origin
       (method url-fetch)
@@ -2490,25 +2490,15 @@ make it a perfect utility on modern distros.")
                           version ".tar.gz"))
       (file-name (string-append name "-" version ".tar.gz"))
       (sha256 (base32
-               "0isgmav3z3nb5bsdya8m3haqhzj1lyfjx7i812cqfjrh2a9msin4"))))
+               "15a6vb67y5wsmf0irrq7sxam18yqpz64130k83ryf24mp40h661b"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:phases (modify-phases %standard-phases
-                  (add-after
-                   'unpack 'autogen.sh-and-fix-paths
-                   (lambda* (#:key outputs #:allow-other-keys)
-                     (let ((out (assoc-ref outputs "out")))
-                       ;; XXX this can probably be removed after version 1.7.1.
-                       ;; upstartconfir is hardcoded to /etc/init and the build
-                       ;; system tries to mkdir that.  We don't even need upstart
-                       ;; files at all; this is a fast and kludgy workaround
-                       (substitute* "data/Makefile.am"
-                         (("upstartconfdir = /etc/init")
-                          (string-append "upstartconfdir = "
-                                         out "/etc/init")))
-                       ;; Now run autogen
-                       (invoke "sh" "autogen.sh")
-                       #t))))
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'bootstrap
+           (lambda _
+             (invoke "sh" "autogen.sh")
+             #t)))
        #:configure-flags
        (let ((out      (assoc-ref %outputs "out")))
          (list (string-append "--sysconfdir="
@@ -2530,7 +2520,7 @@ make it a perfect utility on modern distros.")
     (synopsis "CPU scaling for thermal management")
     (description "The Linux Thermal Daemon helps monitor and control temperature
 on systems running the Linux kernel.")
-    ;; arm and aarch64 don't have cpuid.h
+    ;; arm and aarch64 don't have cpuid.h.
     (supported-systems '("i686-linux" "x86_64-linux"))
     (license license:gpl2+)))
 
diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm
index ef79eae8e2..d8dc1e3134 100644
--- a/gnu/packages/audio.scm
+++ b/gnu/packages/audio.scm
@@ -3244,7 +3244,7 @@ on the ALSA software PCM plugin.")
                 "1vm0dy5qlycqkima7y5ajzvazyjybifa803fabjcpncjz08c26vp"))))
     (build-system glib-or-gtk-build-system)
     (arguments
-     '(#:tests? #f                      ; no tests
+     `(#:tests? #f                      ; no tests
        #:out-of-source? #f              ; for the 'install-doc' phase
        #:configure-flags
        (let* ((out (assoc-ref %outputs "out"))
@@ -3256,13 +3256,13 @@ on the ALSA software PCM plugin.")
          (add-after 'install 'install-doc
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((out (assoc-ref outputs "out"))
-                    (docdir (string-append out "/share/doc/snd")))
-               (mkdir-p docdir)
+                    (doc (string-append out "/share/doc/"
+                                        ,name "-" ,version)))
                (for-each
                 (lambda (f)
-                  (install-file f docdir))
+                  (install-file f doc))
                 (find-files "." "\\.html$|COPYING"))
-               (copy-recursively "pix" (string-append docdir "/pix"))
+               (copy-recursively "pix" (string-append doc "/pix"))
                #t))))))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index 9921cd575c..2984e854ce 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -755,7 +755,7 @@ writing of compressed data created with the zlib and bzip2 libraries.")
                           (string-append "prefix=" (assoc-ref %outputs "out")))
        #:phases (modify-phases %standard-phases
                   (delete 'configure))))        ; no configure script
-    (home-page "http://www.lz4.org")
+    (home-page "https://www.lz4.org")
     (synopsis "Compression algorithm focused on speed")
     (description "LZ4 is a lossless compression algorithm, providing
 compression speed at 400 MB/s per core (0.16 Bytes/cycle).  It also features an
diff --git a/gnu/packages/disk.scm b/gnu/packages/disk.scm
index f5776ebda8..bdd24a315c 100644
--- a/gnu/packages/disk.scm
+++ b/gnu/packages/disk.scm
@@ -11,6 +11,7 @@
 ;;; Copyright © 2017 Stefan Reichör <stefan@xsteve.at>
 ;;; Copyright © 2018 Vasile Dumitrascu <va511e@yahoo.com>
 ;;; Copyright © 2018 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2018 Rutger Helling <rhelling@mykolab.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -53,6 +54,7 @@
   #:use-module (gnu packages guile)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages vim)
+  #:use-module (gnu packages w3m)
   #:use-module (gnu packages xml))
 
 (define-public parted
@@ -516,12 +518,28 @@ Duperemove can also take input from the @command{fdupes} program.")
                (base32
                 "1lnzkrxcnlwnyi3z0v8ybyp8d5rm26qm35rr68kbs2lbs06inha0"))))
     (build-system python-build-system)
+    (inputs
+     `(("w3m" ,w3m)))
     (native-inputs                      ;for tests
      `(("python-pytest" ,python-pytest)
        ("python-pylint" ,python-pylint)
        ("python-flake8" ,python-flake8)
        ("which" ,which)))
-    (arguments '(#:test-target "test"))
+    (arguments
+     '(#:test-target "test"
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'configure 'wrap-program
+           ;; Tell 'ranger' where 'w3mimgdisplay' is.
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let* ((out  (assoc-ref outputs "out"))
+                    (ranger (string-append out "/bin/ranger"))
+                    (w3m (assoc-ref inputs "w3m"))
+                    (w3mimgdisplay (string-append w3m
+                                   "/libexec/w3m/w3mimgdisplay")))
+               (wrap-program ranger
+                 `("W3MIMGDISPLAY_PATH" ":" prefix (,w3mimgdisplay)))
+               #t))))))
     (home-page "https://ranger.github.io/")
     (synopsis "Console file manager")
     (description "ranger is a console file manager with Vi key bindings.  It
diff --git a/gnu/packages/fvwm.scm b/gnu/packages/fvwm.scm
index 63b1052e07..386edba591 100644
--- a/gnu/packages/fvwm.scm
+++ b/gnu/packages/fvwm.scm
@@ -35,7 +35,7 @@
 (define-public fvwm
   (package
     (name "fvwm")
-    (version "2.6.7")
+    (version "2.6.8")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -43,7 +43,7 @@
                     version "/" name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0wzghjgy65pkn31rgl14fngizw7nbkzbxsfa670xmrndpmd4sr81"))))
+                "0hgkkdzcqjnaabvv9cnh0bz90nnjskbhjg9qnzpi2x0mbliwjdpv"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
diff --git a/gnu/packages/lxqt.scm b/gnu/packages/lxqt.scm
index 4ead02559f..c84d26d4cb 100644
--- a/gnu/packages/lxqt.scm
+++ b/gnu/packages/lxqt.scm
@@ -4,6 +4,7 @@
 ;;; Copyright © 2016 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017 Nils Gillmann <ng0@n0.is>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -138,7 +139,7 @@ for the LXQt desktop environment.")
 (define-public lxqt-build-tools
   (package
     (name "lxqt-build-tools")
-    (version "0.4.0")
+    (version "0.5.0")
     (source
      (origin
        (method url-fetch)
@@ -147,10 +148,10 @@ for the LXQt desktop environment.")
        (file-name (string-append name "-" version ".tar.xz"))
        (sha256
         (base32
-         "1llbrjbgabxlq933a8cpg03b3mdmvd8983csnd4f7vrcj51nv0xh"))))
+         "13b5x26p6ycnwzlgg1cgvlc88wjrjmlb3snrrmzh0xgh9h6hhvd6"))))
     (build-system cmake-build-system)
     (arguments
-     `(#:tests? #f)) ;No tests
+     `(#:tests? #f))                    ; no tests
     (native-inputs
      `(("pkg-config" ,pkg-config)
        ("glib" ,glib)))
diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index eabdba692a..35271e75ed 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -1369,6 +1369,7 @@ hashing schemes plugin for @code{Dovecot}.")
      `(("perl" ,perl)))
     (inputs
      `(("bdb" ,bdb)
+       ("cyrus-sasl" ,cyrus-sasl)
        ("openssl" ,openssl)
        ("zlib" ,zlib)))
     (home-page "http://isync.sourceforge.net/")
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index a8b4527960..bc34efeb9f 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -2592,9 +2592,12 @@ Songs can be searched by artist, name or even by a part of the song text.")
      `(#:phases
        (modify-phases %standard-phases
          (add-after 'unpack 'set-HOME
-           (lambda _ (setenv "HOME" (string-append (getcwd) "/tmp"))))
+           (lambda _
+             (setenv "HOME" (string-append (getcwd) "/tmp"))
+             #t))
          (replace 'check
-           (lambda _ (zero? (system* "nosetests" "-v")))))))
+           (lambda _
+             (invoke "nosetests" "-v"))))))
     (native-inputs
      `(("python-beautifulsoup4" ,python-beautifulsoup4)
        ("python-flask" ,python-flask)
diff --git a/gnu/packages/nano.scm b/gnu/packages/nano.scm
index 07c2a1ff77..a7adfcd5d5 100644
--- a/gnu/packages/nano.scm
+++ b/gnu/packages/nano.scm
@@ -30,7 +30,7 @@
 (define-public nano
   (package
     (name "nano")
-    (version "2.9.7")
+    (version "2.9.8")
     (source
      (origin
       (method url-fetch)
@@ -38,7 +38,7 @@
                           version ".tar.xz"))
       (sha256
        (base32
-        "1ga4sdk3ikx1ilggc6c77vyfpbmq3nrhg6svgglpf5sv60bv0jmn"))))
+        "122lm0z97wk3mgnbn8m4d769d4j9rxyc9z7s89xd4gsdp8qsrpn2"))))
     (build-system gnu-build-system)
     (inputs
      `(("gettext" ,gettext-minimal)
diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm
index 84f17ad553..fb7fd3d2fe 100644
--- a/gnu/packages/pdf.scm
+++ b/gnu/packages/pdf.scm
@@ -985,7 +985,7 @@ PDF.  Indeed @command{pdfposter} was inspired by @command{poster}.")
 (define-public pdfgrep
   (package
     (name "pdfgrep")
-    (version "2.0.1")
+    (version "2.1.1")
     (source
      (origin
        (method url-fetch)
@@ -993,7 +993,7 @@ PDF.  Indeed @command{pdfposter} was inspired by @command{poster}.")
                            name "-" version ".tar.gz"))
        (sha256
         (base32
-         "07llkrkcfjwd3ybai9ad10ybhr0biffcplmy7lw4fb87nd2dfw03"))))
+         "02qcl5kmr5qzjfc99qpbpfb1890bxlrq3r208gnding51zrmb09c"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
diff --git a/gnu/packages/perl-check.scm b/gnu/packages/perl-check.scm
index 9c17733d4c..a1be996e04 100644
--- a/gnu/packages/perl-check.scm
+++ b/gnu/packages/perl-check.scm
@@ -1236,7 +1236,7 @@ plan, or not, and things will still Just Work.")
 (define-public perl-test-without-module
   (package
     (name "perl-test-without-module")
-    (version "0.18")
+    (version "0.20")
     (source
      (origin
        (method url-fetch)
@@ -1244,7 +1244,7 @@ plan, or not, and things will still Just Work.")
                            "Test-Without-Module-" version ".tar.gz"))
        (sha256
         (base32
-         "0zwc2dk5srd02j4p049w77m89iw5nbff381rmhcbaz8x2w5kdhz2"))))
+         "0955ib9cz1naz7a2v6lx78kj29q7ihmdn51im6wd1im669yfp6lf"))))
     (build-system perl-build-system)
     (home-page "http://search.cpan.org/dist/Test-Without-Module/")
     (synopsis "Test fallback behaviour in absence of modules")
diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index 79add3e6d1..2d2bb62a78 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -1140,7 +1140,7 @@ loaded class.")
 (define-public perl-class-load
   (package
     (name "perl-class-load")
-    (version "0.23")
+    (version "0.24")
     (source
      (origin
        (method url-fetch)
@@ -1148,12 +1148,13 @@ loaded class.")
                            "Class-Load-" version ".tar.gz"))
        (sha256
         (base32
-         "13xjfh4fadq4pkq7fcj42b26544jl7gqdg2y3imnra9fwxwsbg7j"))))
+         "0dnacm959vi5819h6cdl5qpi89fr81p6smbsqx7m6in18vd87f8b"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-module-build-tiny" ,perl-module-build-tiny)
        ("perl-test-fatal" ,perl-test-fatal)
-       ("perl-test-requires" ,perl-test-requires)))
+       ("perl-test-needs" ,perl-test-needs)
+       ("perl-test-without-module" ,perl-test-without-module)))
     (propagated-inputs
      `(("perl-package-stash" ,perl-package-stash)
        ("perl-data-optlist" ,perl-data-optlist)
@@ -1170,7 +1171,7 @@ names, not Class::Name.  For that, this module provides \"load_class
 (define-public perl-class-load-xs
   (package
     (name "perl-class-load-xs")
-    (version "0.09")
+    (version "0.10")
     (source
      (origin
        (method url-fetch)
@@ -1178,11 +1179,12 @@ names, not Class::Name.  For that, this module provides \"load_class
                            "Class-Load-XS-" version ".tar.gz"))
        (sha256
         (base32
-         "1aivalms81s3a2cj053ncgnmkpgl7vspna8ajlkqir7rdn8kpv5v"))))
+         "1ldd4a306hjagm5v9j0gjg8y7km4v3q45bxxqmj2bzgb6vsjrhjv"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-test-fatal" ,perl-test-fatal)
-       ("perl-test-requires" ,perl-test-requires)))
+       ("perl-test-needs" ,perl-test-needs)
+       ("perl-test-without-module" ,perl-test-without-module)))
     (inputs `(("perl-class-load" ,perl-class-load)))
     (home-page "http://search.cpan.org/dist/Class-Load-XS/")
     (synopsis "XS implementation of parts of Class::Load")
@@ -1472,7 +1474,7 @@ and writing of @code{.ini}-style configuration files.")
 (define-public perl-context-preserve
   (package
     (name "perl-context-preserve")
-    (version "0.02")
+    (version "0.03")
     (source
      (origin
        (method url-fetch)
@@ -1480,7 +1482,7 @@ and writing of @code{.ini}-style configuration files.")
                            "Context-Preserve-" version ".tar.gz"))
        (sha256
         (base32
-         "0qkjj1qifr87zlfpfnn21gdyrpfgilh8zp3b53008m2ax02k87gc"))))
+         "07zxgmb11bn4zj3w9g1zwbb9iv4jyk5q7hc0nv59knvv5i64m489"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-test-exception" ,perl-test-exception)
@@ -2154,7 +2156,7 @@ hours, minutes, seconds, and time zones.")
 (define-public perl-datetime
   (package
     (name "perl-datetime")
-    (version "1.46")
+    (version "1.49")
     (source
      (origin
        (method url-fetch)
@@ -2162,7 +2164,7 @@ hours, minutes, seconds, and time zones.")
                            "DateTime-" version ".tar.gz"))
        (sha256
         (base32
-         "1247d2q2gm912bxj88a0sr5gvj2nx4a7n6z1smkq16iy21cziz79"))))
+         "0hbw4zq1562slnz7g7hyhfhyq98dzkk3i5g21x3xra5cvfix93kh"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-cpan-meta-check" ,perl-cpan-meta-check)
@@ -2455,7 +2457,7 @@ the DateTime.pm class.")
 (define-public perl-datetime-timezone
   (package
     (name "perl-datetime-timezone")
-    (version "2.17")
+    (version "2.19")
     (source
      (origin
        (method url-fetch)
@@ -2463,7 +2465,7 @@ the DateTime.pm class.")
                            "DateTime-TimeZone-" version ".tar.gz"))
        (sha256
         (base32
-         "1ckhjw7h545306b02p6ra60y8zxqnbqr2lsy7c1wib8libf0l2hx"))))
+         "1y54bsgq886sg35fgmxgj8wwmgs4l83qhwa0g3zv8w9d43z2w6dr"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-test-fatal" ,perl-test-fatal)
@@ -3079,7 +3081,7 @@ errors are rethrown automatically.")
 (define-public perl-exception-class
   (package
     (name "perl-exception-class")
-    (version "1.39")
+    (version "1.44")
     (source
      (origin
        (method url-fetch)
@@ -3087,7 +3089,7 @@ errors are rethrown automatically.")
                            "Exception-Class-" version ".tar.gz"))
        (sha256
         (base32
-         "10r06v6568s33p6h9f9ml0iabc07id86mjkf74gy7ld6d5m7b741"))))
+         "03gf4cdgrjnljgrlxkvbh2cahsyzn0zsh2zcli7b1lrqn7wgpwrk"))))
     (build-system perl-build-system)
     (propagated-inputs
      `(("perl-devel-stacktrace" ,perl-devel-stacktrace)
@@ -3487,7 +3489,7 @@ file system.")
 (define-public perl-file-pushd
   (package
     (name "perl-file-pushd")
-    (version "1.014")
+    (version "1.016")
     (source
      (origin
        (method url-fetch)
@@ -3497,7 +3499,7 @@ file system.")
              ".tar.gz"))
        (sha256
         (base32
-         "02rlqvyy7gly3dsqwaa81aisyy9c791b8xvwzczcbgmcwgzkgaxm"))))
+         "1p3wz5jnddd87wkwl4x3fc3ncprahdxdzwqd4scb10r98h4pyfnp"))))
     (build-system perl-build-system)
     (home-page
      "http://search.cpan.org/dist/File-pushd/")
@@ -3961,15 +3963,15 @@ merged.")
 (define-public perl-hash-multivalue
   (package
     (name "perl-hash-multivalue")
-    (version "0.15")
+    (version "0.16")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://cpan/authors/id/M/MI/MIYAGAWA/"
+       (uri (string-append "mirror://cpan/authors/id/A/AR/ARISTOTLE/"
                            "Hash-MultiValue-" version ".tar.gz"))
        (sha256
         (base32
-         "1jc37kwpa1fl88va8bd1p95h0vjv1gsvmn7pc2pxj62ga6x0wpc0"))))
+         "1x3k7h542xnigz0b8vsfiq580p5r325wi5b8mxppiqk8mbvis636"))))
     (build-system perl-build-system)
     (home-page "http://search.cpan.org/dist/Hash-MultiValue/")
     (synopsis "Store multiple values per key")
@@ -4618,7 +4620,7 @@ one: logging, exceptions, and translations.")
 (define-public perl-libintl-perl
   (package
     (name "perl-libintl-perl")
-    (version "1.28")
+    (version "1.29")
     (source
      (origin
        (method url-fetch)
@@ -4626,7 +4628,7 @@ one: logging, exceptions, and translations.")
                            "libintl-perl-" version ".tar.gz"))
        (sha256
         (base32
-         "1gafrfvicjclqlz6i62jx2iqbq878yn3ws86waz2sqbd3gxz5svv"))))
+         "1cgvrgh4axd8jlr6497ndgphgvgnqc1axd306460hskdvc85z4vq"))))
     (build-system perl-build-system)
     (arguments
      `(#:phases
@@ -4912,15 +4914,15 @@ return values, trading space for time.")
 (define-public perl-memoize-expirelru
   (package
     (name "perl-memoize-expirelru")
-    (version "0.55")
+    (version "0.56")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://cpan/authors/id/B/BP/BPOWERS/"
+       (uri (string-append "mirror://cpan/authors/id/N/NE/NEILB/"
                            "Memoize-ExpireLRU-" version ".tar.gz"))
        (sha256
         (base32
-         "0klk0vj78lr259mnv1rbxib8gzf2cfp4zhkhbcxyhadkkl73myvj"))))
+         "1xnp3jqabl4il5kfadlqimbxhzsbm7gpwrgw0m5s5fdsrc0n70zf"))))
     (build-system perl-build-system)
     (home-page "http://search.cpan.org/dist/Memoize-ExpireLRU/")
     (synopsis "Expiry plug-in for Memoize that adds LRU cache expiration")
@@ -5176,15 +5178,15 @@ implementations.")
 (define-public perl-module-install
   (package
     (name "perl-module-install")
-    (version "1.14")
+    (version "1.19")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://cpan/authors/id/B/BI/BINGOS/"
+       (uri (string-append "mirror://cpan/authors/id/E/ET/ETHER/"
                            "Module-Install-" version ".tar.gz"))
        (sha256
         (base32
-         "0j8dz87k60i1khd9xadd8kl6bgm9s5s5zl86rzsz5bq36siz00iz"))))
+         "06q12cm97yh4p7qbm0a2p96996ii6ss59qy57z0f7f9svy6sflqs"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-yaml-tiny" ,perl-yaml-tiny)))
@@ -5550,7 +5552,7 @@ overloads will \"just work\".")
 (define-public perl-moosex-methodattributes
   (package
     (name "perl-moosex-methodattributes")
-    (version "0.29")
+    (version "0.31")
     (source
      (origin
        (method url-fetch)
@@ -5558,7 +5560,7 @@ overloads will \"just work\".")
                            "MooseX-MethodAttributes-" version ".tar.gz"))
        (sha256
         (base32
-         "1pz3i67gadfmgzj87m1xp2ilcg3yhppdylcng2h6c11dy0a06hdk"))))
+         "1whd10w7bm3dwaj7gpgw40bci9vvb2zmxs4349ifji91hvinwqck"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-module-build-tiny" ,perl-module-build-tiny)
@@ -6976,7 +6978,7 @@ used for writing documentation for Perl and for Perl modules.")
 (define-public perl-posix-strftime-compiler
   (package
     (name "perl-posix-strftime-compiler")
-    (version "0.41")
+    (version "0.42")
     (source
      (origin
        (method url-fetch)
@@ -6984,10 +6986,10 @@ used for writing documentation for Perl and for Perl modules.")
                            "POSIX-strftime-Compiler-" version ".tar.gz"))
        (sha256
         (base32
-         "0f9p3hx0vqx8zg5v24pz0s4zc8ln100c7c91ks681wq02phqj2v7"))))
+         "04dcn2n4rfkj8p24vj2p17vvis40l87pf2vdqp0vqm5jg3fjnn16"))))
     (build-system perl-build-system)
     (native-inputs `(("perl-module-build" ,perl-module-build)))
-    (arguments `(#:tests? #f))          ;TODO: Timezone test failures
+    (arguments `(#:tests? #f))          ; TODO: Timezone test failures
     (home-page "http://search.cpan.org/dist/POSIX-strftime-Compiler/")
     (synopsis "GNU C library compatible strftime for loggers and servers")
     (description "POSIX::strftime::Compiler provides GNU C library compatible
@@ -8151,15 +8153,15 @@ used to justify strings to various alignment styles.")
 (define-public perl-text-balanced
   (package
     (name "perl-text-balanced")
-    (version "2.02")
+    (version "2.03")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://cpan/authors/id/A/AD/ADAMK/"
+       (uri (string-append "mirror://cpan/authors/id/S/SH/SHAY/"
                            "Text-Balanced-" version ".tar.gz"))
        (sha256
         (base32
-         "1d3mba2sjpp044h16pkf231cksa34ripaz6rmgxp0ygpl917az57"))))
+         "1j4jjw6bg6ik8cn1mimw54rvg4h0qf4hm9k63y9572sny3w56xq5"))))
     (build-system perl-build-system)
     (home-page "http://search.cpan.org/dist/Text-Balanced/")
     (synopsis "Extract delimited text sequences from strings")
@@ -9229,7 +9231,7 @@ recursive-descent text parsers from simple yacc-like grammar specifications.")
 (define-public perl-parse-yapp
   (package
     (name "perl-parse-yapp")
-    (version "1.2")
+    (version "1.21")
     (source
      (origin
        (method url-fetch)
@@ -9239,7 +9241,7 @@ recursive-descent text parsers from simple yacc-like grammar specifications.")
              ".tar.gz"))
        (sha256
         (base32
-         "16p4qgqg28cy76ylcf4wq1r693gqpx8xq0w32b3564i67h49zljb"))))
+         "1r8kbyk0qd4ficmabj753kjpq0ib0csk01169w7jxflg62cfj41q"))))
     (build-system perl-build-system)
     (home-page "http://search.cpan.org/dist/Parse-Yapp/")
     (synopsis "Generate and use LALR parsers")
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 4868baa928..9523ff3734 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -312,14 +312,14 @@ C, yielding parse times that can be a thirtieth of the html5lib parse times.")
 (define-public python-pycurl
   (package
     (name "python-pycurl")
-    (version "7.43.0.1")
+    (version "7.43.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://dl.bintray.com/pycurl/pycurl/pycurl-"
                            version ".tar.gz"))
        (sha256
-        (base32 "1ali1gjs9iliwjra7w0y5hwg79a2fd0f4ydvv6k27sgxpbr1n8s3"))))
+        (base32 "1915kb04k1j4y6k1dx1sgnbddxrl9r1n4q928if2lkrdm73xy30g"))))
     (build-system python-build-system)
     (arguments
      ;; The tests attempt to access external web servers, so we cannot run
diff --git a/gnu/packages/security-token.scm b/gnu/packages/security-token.scm
index 9d9580ca7b..9c8474dd02 100644
--- a/gnu/packages/security-token.scm
+++ b/gnu/packages/security-token.scm
@@ -4,7 +4,7 @@
 ;;; Copyright © 2016 Mike Gerwitz <mtg@gnu.org>
 ;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be>
-;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2018 Chris Marusich <cmmarusich@gmail.com>
 ;;;
@@ -57,8 +57,8 @@
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "https://alioth.debian.org/frs/download.php/file/4238/"
-                    "ccid-" version ".tar.bz2"))
+                    "https://ccid.apdu.fr/files/"
+                    name "-" version ".tar.bz2"))
               (sha256
                (base32
                 "0kdqmbma6sclsrbxy9w85h7cs0v11if4nc2r9v09613k8pl2lhx5"))))
@@ -79,7 +79,7 @@
     (inputs
      `(("libusb" ,libusb)
        ("pcsc-lite" ,pcsc-lite)))
-    (home-page "https://pcsclite.alioth.debian.org/ccid.html")
+    (home-page "https://ccid.apdu.fr/")
     (synopsis "PC/SC driver for USB smart card devices")
     (description
      "This package provides a PC/SC IFD handler implementation for devices
@@ -157,8 +157,8 @@ the low-level development kit for the Yubico YubiKey authentication device.")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "https://alioth.debian.org/frs/download.php/file/4235/"
-                    "pcsc-lite-" version ".tar.bz2"))
+                    "https://pcsclite.apdu.fr/files/"
+                    name "-" version ".tar.bz2"))
               (sha256
                (base32
                 "1jc9ws5ra6v3plwraqixin0w0wfxj64drahrbkyrrwzghqjjc9ss"))))
@@ -171,7 +171,7 @@ the low-level development kit for the Yubico YubiKey authentication device.")
        ("pkg-config" ,pkg-config)))
     (inputs
      `(("libudev" ,eudev)))
-    (home-page "https://pcsclite.alioth.debian.org/pcsclite.html")
+    (home-page "https://pcsclite.apdu.fr/")
     (synopsis "Middleware to access a smart card using PC/SC")
     (description
      "pcsc-lite provides an interface to communicate with smartcards and
diff --git a/gnu/packages/suckless.scm b/gnu/packages/suckless.scm
index ed4ec28534..a343e3cb6e 100644
--- a/gnu/packages/suckless.scm
+++ b/gnu/packages/suckless.scm
@@ -341,8 +341,8 @@ point surf to another URI by setting its XProperties.")
        ("libx11" ,libx11)
        ("libxft" ,libxft)
        ("fontconfig" ,fontconfig)))
-    (synopsis "Plaintext presentation tool")
-    (description "Sent uses plaintext files and PNG images to create slideshow
+    (synopsis "Plain-text presentation tool")
+    (description "Sent uses plain-text files and PNG images to create slideshow
 presentations.  Each paragraph represents a slide in the presentation.
 Especially for presentations using the Takahashi method this is very nice and
 allows you to write down the presentation for a quick lightning talk within a
diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm
index 618b1a15f7..a934a50878 100644
--- a/gnu/packages/tls.scm
+++ b/gnu/packages/tls.scm
@@ -115,7 +115,7 @@ in intelligent transportation networks.")
 (define-public p11-kit
   (package
     (name "p11-kit")
-    (version "0.23.11")
+    (version "0.23.12")
     (source
      (origin
       (method url-fetch)
@@ -123,7 +123,7 @@ in intelligent transportation networks.")
                           "download/" version "/p11-kit-" version ".tar.gz"))
       (sha256
        (base32
-        "0asaxbypvns5xf9hb5jy0kijz0b3hp1s8likhywmry3klpdchhxj"))))
+        "00ylbx2gxrm9bv6w4y3qf8z30vpdkqaa8z1y22hy27fv34py5fjq"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
diff --git a/guix/build-system/r.scm b/guix/build-system/r.scm
index 6bdb7061eb..d20f66e1a9 100644
--- a/guix/build-system/r.scm
+++ b/guix/build-system/r.scm
@@ -53,7 +53,7 @@ release corresponding to NAME and VERSION."
   (list (string-append "https://bioconductor.org/packages/release/bioc/src/contrib/"
                        name "_" version ".tar.gz")
         ;; TODO: use %bioconductor-version from (guix import cran)
-        (string-append "https://bioconductor.org/packages/3.6/bioc/src/contrib/Archive/"
+        (string-append "https://bioconductor.org/packages/3.7/bioc/src/contrib/Archive/"
                        name "_" version ".tar.gz")))
 
 (define %r-build-system-modules