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authorRicardo Wurmus <rekado@elephly.net>2019-03-25 14:05:09 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-25 14:05:09 +0100
commitc5a2b518ad1cf5e062c073fe31692e690c28ab78 (patch)
tree9b7ccbfc18179270a2fe29c643502a13ce800aa9
parent72a216a9d048a2a1018877b7e0eadb75fb278cf1 (diff)
downloadguix-c5a2b518ad1cf5e062c073fe31692e690c28ab78.tar
guix-c5a2b518ad1cf5e062c073fe31692e690c28ab78.tar.gz
gnu: r-wgcna: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-wgcna): Move from here... * gnu/packages/cran.scm (r-wgcna): ...to here.
-rw-r--r--gnu/packages/bioinformatics.scm39
-rw-r--r--gnu/packages/cran.scm39
2 files changed, 39 insertions, 39 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c1d7f5d20e..1a942b6476 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8466,45 +8466,6 @@ characterization and visualization of a wide range of mutational patterns
in SNV base substitution data.")
(license license:expat)))
-(define-public r-wgcna
- (package
- (name "r-wgcna")
- (version "1.66")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "WGCNA" version))
- (sha256
- (base32
- "0rhnyhzfn93yp24jz9v6dzrmyizwzdw070a7idm0k33w1cm8sjqv"))))
- (properties `((upstream-name . "WGCNA")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)
- ("r-doparallel" ,r-doparallel)
- ("r-dynamictreecut" ,r-dynamictreecut)
- ("r-fastcluster" ,r-fastcluster)
- ("r-foreach" ,r-foreach)
- ("r-go-db" ,r-go-db)
- ("r-hmisc" ,r-hmisc)
- ("r-impute" ,r-impute)
- ("r-rcpp" ,r-rcpp)
- ("r-robust" ,r-robust)
- ("r-survival" ,r-survival)
- ("r-matrixstats" ,r-matrixstats)
- ("r-preprocesscore" ,r-preprocesscore)))
- (home-page
- "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
- (synopsis "Weighted correlation network analysis")
- (description
- "This package provides functions necessary to perform Weighted
-Correlation Network Analysis on high-dimensional data. It includes functions
-for rudimentary data cleaning, construction and summarization of correlation
-networks, module identification and functions for relating both variables and
-modules to sample traits. It also includes a number of utility functions for
-data manipulation and visualization.")
- (license license:gpl2+)))
-
(define-public r-chipkernels
(let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372")
(revision "1"))
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8bf5404a0c..ba86457808 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -12715,3 +12715,42 @@ authoring books and technical documents with R Markdown.")
@code{optparse} library to be used with Rscript to write shebang scripts
that accept short and long options.")
(license license:gpl2+)))
+
+(define-public r-wgcna
+ (package
+ (name "r-wgcna")
+ (version "1.66")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "WGCNA" version))
+ (sha256
+ (base32
+ "0rhnyhzfn93yp24jz9v6dzrmyizwzdw070a7idm0k33w1cm8sjqv"))))
+ (properties `((upstream-name . "WGCNA")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-doparallel" ,r-doparallel)
+ ("r-dynamictreecut" ,r-dynamictreecut)
+ ("r-fastcluster" ,r-fastcluster)
+ ("r-foreach" ,r-foreach)
+ ("r-go-db" ,r-go-db)
+ ("r-hmisc" ,r-hmisc)
+ ("r-impute" ,r-impute)
+ ("r-rcpp" ,r-rcpp)
+ ("r-robust" ,r-robust)
+ ("r-survival" ,r-survival)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-preprocesscore" ,r-preprocesscore)))
+ (home-page
+ "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
+ (synopsis "Weighted correlation network analysis")
+ (description
+ "This package provides functions necessary to perform Weighted
+Correlation Network Analysis on high-dimensional data. It includes functions
+for rudimentary data cleaning, construction and summarization of correlation
+networks, module identification and functions for relating both variables and
+modules to sample traits. It also includes a number of utility functions for
+data manipulation and visualization.")
+ (license license:gpl2+)))