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author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-25 16:20:00 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-25 16:20:00 +0100 |
commit | 9d0f794229faeb24801d30f20c5df47bc4a03041 (patch) | |
tree | 31fe68b5155080bc35734f16ab5c5ac5393b246a | |
parent | c04f230eb3199b3b516584e102a87fc0e456806a (diff) | |
download | guix-9d0f794229faeb24801d30f20c5df47bc4a03041.tar guix-9d0f794229faeb24801d30f20c5df47bc4a03041.tar.gz |
gnu: Add r-anota.
* gnu/packages/bioconductor.scm (r-anota): New variable.
-rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 78af3f5153..656a594d96 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2671,3 +2671,34 @@ have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters.") (license license:artistic2.0))) + +(define-public r-anota + (package + (name "r-anota") + (version "1.30.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "anota" version)) + (sha256 + (base32 + "182fp6dpws516y0igvwn6936higfqvy25haa0xs273f8aczr9cf0")))) + (build-system r-build-system) + (propagated-inputs + `(("r-multtest" ,r-multtest) + ("r-qvalue" ,r-qvalue))) + (home-page "https://bioconductor.org/packages/anota/") + (synopsis "Analysis of translational activity") + (description + "Genome wide studies of translational control is emerging as a tool to +study verious biological conditions. The output from such analysis is both +the mRNA level (e.g. cytosolic mRNA level) and the levl of mRNA actively +involved in translation (the actively translating mRNA level) for each mRNA. +The standard analysis of such data strives towards identifying differential +translational between two or more sample classes - i.e. differences in +actively translated mRNA levels that are independent of underlying differences +in cytosolic mRNA levels. This package allows for such analysis using partial +variances and the random variance model. As 10s of thousands of mRNAs are +analyzed in parallell the library performs a number of tests to assure that +the data set is suitable for such analysis.") + (license license:gpl3))) |