aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2019-03-25 16:20:00 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-25 16:20:00 +0100
commit9d0f794229faeb24801d30f20c5df47bc4a03041 (patch)
tree31fe68b5155080bc35734f16ab5c5ac5393b246a
parentc04f230eb3199b3b516584e102a87fc0e456806a (diff)
downloadguix-9d0f794229faeb24801d30f20c5df47bc4a03041.tar
guix-9d0f794229faeb24801d30f20c5df47bc4a03041.tar.gz
gnu: Add r-anota.
* gnu/packages/bioconductor.scm (r-anota): New variable.
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 78af3f5153..656a594d96 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2671,3 +2671,34 @@ have became important basis for many bioinformatics analysis approaches.
GOSemSim is an R package for semantic similarity computation among GO terms,
sets of GO terms, gene products and gene clusters.")
(license license:artistic2.0)))
+
+(define-public r-anota
+ (package
+ (name "r-anota")
+ (version "1.30.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "anota" version))
+ (sha256
+ (base32
+ "182fp6dpws516y0igvwn6936higfqvy25haa0xs273f8aczr9cf0"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-multtest" ,r-multtest)
+ ("r-qvalue" ,r-qvalue)))
+ (home-page "https://bioconductor.org/packages/anota/")
+ (synopsis "Analysis of translational activity")
+ (description
+ "Genome wide studies of translational control is emerging as a tool to
+study verious biological conditions. The output from such analysis is both
+the mRNA level (e.g. cytosolic mRNA level) and the levl of mRNA actively
+involved in translation (the actively translating mRNA level) for each mRNA.
+The standard analysis of such data strives towards identifying differential
+translational between two or more sample classes - i.e. differences in
+actively translated mRNA levels that are independent of underlying differences
+in cytosolic mRNA levels. This package allows for such analysis using partial
+variances and the random variance model. As 10s of thousands of mRNAs are
+analyzed in parallell the library performs a number of tests to assure that
+the data set is suitable for such analysis.")
+ (license license:gpl3)))