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authorRicardo Wurmus <rekado@elephly.net>2019-03-25 16:09:07 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-25 16:09:07 +0100
commit8a5460b4fb32962e835ec08907210f6416e53582 (patch)
tree7a01352b145e5443944f007997d5710611d0608d
parent3080b81af63c201decc96f8ba62ae174cdc574a2 (diff)
downloadguix-8a5460b4fb32962e835ec08907210f6416e53582.tar
guix-8a5460b4fb32962e835ec08907210f6416e53582.tar.gz
gnu: Add r-triform.
* gnu/packages/bioconductor.scm (r-triform): New variable.
-rw-r--r--gnu/packages/bioconductor.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f687a03030..7bd126b5c0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2555,3 +2555,27 @@ surface of a flowcell.")
for DNA and protein sequences. This package supports several sequence
kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
(license license:gpl2+)))
+
+(define-public r-triform
+ (package
+ (name "r-triform")
+ (version "1.24.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "triform" version))
+ (sha256
+ (base32
+ "12ca24pv1r5vbw3rq345jqg7x3prrbsxk6445zikpzfblwmw0b4s"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-iranges" ,r-iranges)
+ ("r-yaml" ,r-yaml)))
+ (home-page "https://bioconductor.org/packages/triform/")
+ (synopsis "Find enriched regions in transcription factor ChIP-sequencing data")
+ (description
+ "The Triform algorithm uses model-free statistics to identify peak-like
+distributions of TF ChIP sequencing reads, taking advantage of an improved
+peak definition in combination with known profile characteristics.")
+ (license license:gpl2)))