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authorRicardo Wurmus <rekado@elephly.net>2019-03-25 17:19:47 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-25 17:19:47 +0100
commit3f6e6e98572e43297f8f780e0500a9c907c332c9 (patch)
tree6e9d5539206ab3b6551ff672940e502e1b0b9cbf
parent4f8b1fb35fd768ee937dbb6bed9f0d4e27cdf435 (diff)
downloadguix-3f6e6e98572e43297f8f780e0500a9c907c332c9.tar
guix-3f6e6e98572e43297f8f780e0500a9c907c332c9.tar.gz
gnu: Add r-rjava.
* gnu/packages/cran.scm (r-rjava): New variable.
-rw-r--r--gnu/packages/cran.scm50
1 files changed, 50 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 68516ecf6f..d9648e4e9e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -54,8 +54,10 @@
#:use-module (gnu packages graph)
#:use-module (gnu packages gtk)
#:use-module (gnu packages haskell)
+ #:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
#:use-module (gnu packages imagemagick)
+ #:use-module (gnu packages java)
#:use-module (gnu packages javascript)
#:use-module (gnu packages lisp)
#:use-module (gnu packages machine-learning)
@@ -63,6 +65,7 @@
#:use-module (gnu packages mpi)
#:use-module (gnu packages multiprecision)
#:use-module (gnu packages networking)
+ #:use-module (gnu packages pcre)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
@@ -12871,3 +12874,50 @@ write HTML reports for statistical analysis. Finally, a driver for Sweave
allows to parse HTML flat files containing R code and to automatically write
the corresponding outputs (tables and graphs).")
(license license:gpl2+)))
+
+(define-public r-rjava
+ (package
+ (name "r-rjava")
+ (version "0.9-10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "rJava" version))
+ (sha256
+ (base32
+ "0y7yg70i3zwbwl4g36js4dqpl51cmwss5ymrsk24d1z07bflp4y9"))))
+ (properties `((upstream-name . "rJava")))
+ (build-system r-build-system)
+ (arguments
+ `(#:modules ((guix build utils)
+ (guix build r-build-system)
+ (ice-9 match))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'set-JAVA_HOME
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((jdk (assoc-ref inputs "jdk")))
+ (setenv "JAVA_HOME" jdk)
+ (setenv "JAVA" (which "java"))
+ (setenv "JAR" (which "jar"))
+ (setenv "JAVAC" (which "javac"))
+ (setenv "JAVAH" (which "javah"))
+ (setenv "JAVA_CPPFLAGS"
+ (string-append "-I" jdk "/include "
+ "-I" jdk "/include/linux"))
+ (match (find-files (string-append jdk "/jre/lib/") "libjvm.so")
+ ((lib) (setenv "JAVA_LIBS" lib))
+ (_ (error "Could not find libjvm.so"))))
+ #t)))))
+ (inputs
+ `(("icu4c" ,icu4c)
+ ("jdk" ,icedtea-8 "jdk")
+ ("pcre" ,pcre)
+ ("zlib" ,zlib)))
+ (home-page "http://www.rforge.net/rJava/")
+ (synopsis "Low-Level R to Java interface")
+ (description
+ "This package provides a low-level interface to the Java VM very much
+like .C/.Call and friends. It allows the creation of objects, calling methods
+and accessing fields.")
+ (license license:gpl2)))