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| author | Lars-Dominik Braun <ldb@leibniz-psychology.org> | 2019-12-12 08:46:13 +0100 |
|---|---|---|
| committer | Ludovic Courtès <ludo@gnu.org> | 2020-01-03 16:06:26 +0100 |
| commit | 41bc208e0cc0e9eca63d7b2c00eef2b9068a28d1 (patch) | |
| tree | 1c4b2d6e7725291b26acf93129190d6c772f00e5 | |
| parent | af0aefd8c10701fa32341506e36297e5105f6143 (diff) | |
| download | guix-41bc208e0cc0e9eca63d7b2c00eef2b9068a28d1.tar guix-41bc208e0cc0e9eca63d7b2c00eef2b9068a28d1.tar.gz | |
gnu: r-irkernel: Fix R kernel loading
* gnu/packages/cran.scm (r-irkernel): Absolute path to R binary
[propagated-inputs]: Generate proper search paths by adding r-minimal
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| -rw-r--r-- | gnu/packages/cran.scm | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2c43d3fc5f..8277026c32 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12575,6 +12575,12 @@ running IRkernel session.") "--name" "ir" "--prefix" out (string-append out "/site-library/IRkernel/kernelspec")) + ;; Record the absolute file name of the 'R' executable in + ;; 'kernel.json'. + (substitute* (string-append out "/share/jupyter" + "/kernels/ir/kernel.json") + (("\\[\"R\",") + (string-append "[\"" (which "R") "\","))) #t)))))) (inputs `(("jupyter" ,jupyter))) @@ -12584,6 +12590,8 @@ running IRkernel session.") ("r-evaluate" ,r-evaluate) ("r-irdisplay" ,r-irdisplay) ("r-jsonlite" ,r-jsonlite) + ;; sets R_LIBS_SITE, so R can actually find this package (IRkernel) + ("r-minimal" ,r-minimal) ("r-pbdzmq" ,r-pbdzmq) ("r-repr" ,r-repr) ("r-uuid" ,r-uuid))) |