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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-08-18 13:09:42 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2016-08-22 16:52:40 +0200 |
| commit | fe02c4c98aee859f7eb75e7ca18a78498ba7fa78 (patch) | |
| tree | 055da75575594dbe81a82fe165a0fc515f43e38c | |
| parent | 52765a63ca43a66137272e9826553c072c1ef769 (diff) | |
| download | guix-fe02c4c98aee859f7eb75e7ca18a78498ba7fa78.tar guix-fe02c4c98aee859f7eb75e7ca18a78498ba7fa78.tar.gz | |
gnu: Add r-bamsignals.
* gnu/packages/bioinformatics.scm (r-bamsignals): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ade6e37579..2bd71c858b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6350,6 +6350,36 @@ nucleotide sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib.") (license license:lgpl2.0+))) +(define-public r-bamsignals + (package + (name "r-bamsignals") + (version "1.4.3") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "bamsignals" version)) + (sha256 + (base32 + "1xqiqvg52p6fcvhr4146djbz79r3j1kmh75mq7rndwglmiybpwmy")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-rcpp" ,r-rcpp) + ("r-rhtslib" ,r-rhtslib) + ("r-zlibbioc" ,r-zlibbioc))) + (inputs + `(("zlib" ,zlib))) + (home-page "http://bioconductor.org/packages/bamsignals") + (synopsis "Extract read count signals from bam files") + (description + "This package allows to efficiently obtain count vectors from indexed bam +files. It counts the number of nucleotide sequence reads in given genomic +ranges and it computes reads profiles and coverage profiles. It also handles +paired-end data.") + (license license:gpl2+))) + (define-public emboss (package (name "emboss") |