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authorRicardo Wurmus <rekado@elephly.net>2019-04-03 16:59:36 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-04-03 17:42:18 +0200
commit2bdc88fce75495496f1d7af65f1cadd1e5f51a66 (patch)
tree2aa6ea1638d273559f6203af41383c6bd81df444
parent83546785b2a2da0c7b0c54ac5eb1bf1d5872ebbf (diff)
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gnu: Add r-rbowtie2.
* gnu/packages/bioconductor.scm (r-rbowtie2): New variable.
-rw-r--r--gnu/packages/bioconductor.scm23
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3800c2472e..823282397c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4179,3 +4179,26 @@ Currently only Affymetrix oligonucleotide analysis is supported.")
This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID
24215113).")
(license license:gpl3)))
+
+(define-public r-rbowtie2
+ (package
+ (name "r-rbowtie2")
+ (version "1.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Rbowtie2" version))
+ (sha256
+ (base32
+ "045cmfwqzcj4zn6r16hkpmr5sd5y0mxvrs5yynf460fdz2p418cr"))))
+ (properties `((upstream-name . "Rbowtie2")))
+ (build-system r-build-system)
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "https://bioconductor.org/packages/Rbowtie2/")
+ (synopsis "R wrapper for Bowtie2 and AdapterRemoval")
+ (description
+ "This package provides an R wrapper of the popular @code{bowtie2}
+sequencing reads aligner and @code{AdapterRemoval}, a convenient tool for
+rapid adapter trimming, identification, and read merging.")
+ (license license:gpl3+)))