diff options
| author | zimoun <zimon.toutoune@gmail.com> | 2021-03-17 21:14:13 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-03-31 21:23:45 +0200 |
| commit | 928221850883482f1c8c30c678a43b8a887aef3e (patch) | |
| tree | 019761078d9e5b74651960d4735b9cae013e23ca | |
| parent | 172b85aa99e62f3b765df530f38e465c7eb4ac8d (diff) | |
| download | guix-928221850883482f1c8c30c678a43b8a887aef3e.tar guix-928221850883482f1c8c30c678a43b8a887aef3e.tar.gz | |
gnu: r-absfiltergsea: Move to (gnu packages bioconductor).
* gnu/packages/cran.scm (r-absfiltergsea): Move this variable from here...
* gnu/packages/bioconductor.scm (r-absfiltergsea): ...to here.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 | ||||
| -rw-r--r-- | gnu/packages/cran.scm | 27 |
2 files changed, 28 insertions, 27 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 87822419c4..3d147bcb0a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1315,6 +1315,34 @@ naming and share the same rich and consistent \"Vector API\" as much as possible.") (license license:artistic2.0))) +;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor. +(define-public r-absfiltergsea + (package + (name "r-absfiltergsea") + (version "1.5.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "AbsFilterGSEA" version)) + (sha256 + (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w")))) + (properties `((upstream-name . "AbsFilterGSEA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-deseq" ,r-deseq) + ("r-limma" ,r-limma) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) + (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/") + (synopsis "Improved false positive control of gene-permuting with absolute filtering") + (description + "This package provides a function that performs gene-permuting of a gene-set +enrichment analysis (GSEA) calculation with or without the absolute filtering. + Without filtering, users can perform (original) two-tailed or one-tailed +absolute GSEA.") + (license license:gpl2))) + ;; This is a CRAN package, but it depends on r-biobase from Bioconductor. (define-public r-bisquerna (package diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 18a614e7e4..044ad8f5bb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -26618,33 +26618,6 @@ include Markov models of discrete and continuous trait evolution and constant rate speciation and extinction.") (license license:gpl2+))) -(define-public r-absfiltergsea - (package - (name "r-absfiltergsea") - (version "1.5.1") - (source - (origin - (method url-fetch) - (uri (cran-uri "AbsFilterGSEA" version)) - (sha256 - (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w")))) - (properties `((upstream-name . "AbsFilterGSEA"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biobase" ,r-biobase) - ("r-deseq" ,r-deseq) - ("r-limma" ,r-limma) - ("r-rcpp" ,r-rcpp) - ("r-rcpparmadillo" ,r-rcpparmadillo))) - (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/") - (synopsis "Improved false positive control of gene-permuting with absolute filtering") - (description - "This package provides a function that performs gene-permuting of a gene-set -enrichment analysis (GSEA) calculation with or without the absolute filtering. - Without filtering, users can perform (original) two-tailed or one-tailed -absolute GSEA.") - (license license:gpl2))) - (define-public r-calculus (package (name "r-calculus") |