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| author | Efraim Flashner <efraim@flashner.co.il> | 2021-02-01 18:18:42 +0200 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2021-02-01 19:02:14 +0200 |
| commit | 877ab0266c69858a9d4554dffba89dc5300a0736 (patch) | |
| tree | 84bcd4c015a60906a0d2b3901faa72e683611acb | |
| parent | 15078567c17851ef0f2b017119f305e0d5e8a140 (diff) | |
| download | guix-877ab0266c69858a9d4554dffba89dc5300a0736.tar guix-877ab0266c69858a9d4554dffba89dc5300a0736.tar.gz | |
gnu: vcflib: Fix generated pkg-config file.
* gnu/packages/bioinformatics.scm (vcflib)[arguments]: In custom
generated pkg-config file, link with all needed libraries and
fix linker library.
* gnu/packages/patches/freebayes-devendor-deps.patch: Adjust accordingly.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 8 | ||||
| -rw-r--r-- | gnu/packages/patches/freebayes-devendor-deps.patch | 2 |
2 files changed, 5 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5b14e765de..39611d23f4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15209,18 +15209,18 @@ library automatically handles index file generation and use.") (let* ((out (assoc-ref outputs "out")) (pkgconfig (string-append out "/lib/pkgconfig"))) (mkdir-p pkgconfig) - (with-output-to-file (string-append pkgconfig "/libvcflib.pc") + (with-output-to-file (string-append pkgconfig "/vcflib.pc") (lambda _ (format #t "prefix=~a~@ exec_prefix=${prefix}~@ libdir=${exec_prefix}/lib~@ includedir=${prefix}/include~@ ~@ - Name: libvcflib~@ + Name: vcflib~@ Version: ~a~@ - Requires: smithwaterman, fastahack~@ + Requires: smithwaterman, fastahack, tabixpp~@ Description: C++ library for parsing and manipulating VCF files~@ - Libs: -L${libdir} -llibvcflib~@ + Libs: -L${libdir} -lvcflib~@ Cflags: -I${includedir}~%" out ,version))) #t)))))) diff --git a/gnu/packages/patches/freebayes-devendor-deps.patch b/gnu/packages/patches/freebayes-devendor-deps.patch index 7e84666b85..9886de11fb 100644 --- a/gnu/packages/patches/freebayes-devendor-deps.patch +++ b/gnu/packages/patches/freebayes-devendor-deps.patch @@ -23,7 +23,7 @@ index f6bf242..bded4af 100644 +tabixpp_dep = dependency('tabixpp', required : false) +fastahack_dep = dependency('fastahack', required : false) +smithwaterman_dep = dependency('smithwaterman', required : false) -+vcflib_dep = dependency('libvcflib', required: false) ++vcflib_dep = dependency('vcflib', required: false) thread_dep = dependency('threads') if htslib_dep.found() |