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authorRoel Janssen <roel@gnu.org>2020-09-10 16:38:43 +0200
committerRoel Janssen <roel@gnu.org>2020-09-10 16:38:43 +0200
commit66be746dc0c0f4ba3d748ed8d0983b2f9afdace8 (patch)
tree9ca34a49357a0cd5bc4a1ac65fe258a3d976631f
parenta5c151de0a7a75bf3803c51856f8c8c928361155 (diff)
downloadguix-66be746dc0c0f4ba3d748ed8d0983b2f9afdace8.tar
guix-66be746dc0c0f4ba3d748ed8d0983b2f9afdace8.tar.gz
gnu: Move r-bisquerna.
* gnu/packages/bioinformatics.scm (r-bisquerna): Move to ... * gnu/packages/cran.scm: ... here.
-rw-r--r--gnu/packages/bioinformatics.scm25
-rw-r--r--gnu/packages/cran.scm25
2 files changed, 25 insertions, 25 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 96cc71babc..cab3df222c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7897,31 +7897,6 @@ manipulating genomic intervals and variables defined along a genome.")
on Bioconductor or which replace R functions.")
(license license:artistic2.0)))
-(define-public r-bisquerna
- (package
- (name "r-bisquerna")
- (version "1.0.4")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "BisqueRNA" version))
- (sha256
- (base32
- "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
- (properties `((upstream-name . "BisqueRNA")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-limsolve" ,r-limsolve)))
- (home-page "https://www.biorxiv.org/content/10.1101/669911v1")
- (synopsis "Decomposition of Bulk Expression with Single-Cell Sequencing")
- (description "This package provides tools to accurately estimate cell type
-abundances from heterogeneous bulk expression. A reference-based method
-utilizes single-cell information to generate a signature matrix and
-transformation of bulk expression for accurate regression based estimates.
-A marker-based method utilizes known cell-specific marker genes to measure
-relative abundances across samples.")
- (license license:gpl3)))
-
(define-public r-annotationdbi
(package
(name "r-annotationdbi")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8f7e379e42..27fae416f8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2183,6 +2183,31 @@ where the bound function accepts additional arguments.")
bindings that call a C++ function.")
(license license:expat)))
+(define-public r-bisquerna
+ (package
+ (name "r-bisquerna")
+ (version "1.0.4")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "BisqueRNA" version))
+ (sha256
+ (base32
+ "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
+ (properties `((upstream-name . "BisqueRNA")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-limsolve" ,r-limsolve)))
+ (home-page "https://www.biorxiv.org/content/10.1101/669911v1")
+ (synopsis "Decomposition of bulk expression with single-cell sequencing")
+ (description "This package provides tools to accurately estimate cell type
+abundances from heterogeneous bulk expression. A reference-based method
+utilizes single-cell information to generate a signature matrix and
+transformation of bulk expression for accurate regression based estimates.
+A marker-based method utilizes known cell-specific marker genes to measure
+relative abundances across samples.")
+ (license license:gpl3)))
+
(define-public r-auc
(package
(name "r-auc")