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authorMaxim Cournoyer <maxim.cournoyer@gmail.com>2021-01-29 10:53:45 -0500
committerMaxim Cournoyer <maxim.cournoyer@gmail.com>2021-01-29 10:58:25 -0500
commit23a5dcce1d893b8f5c5301ae3c1af863776ed3cf (patch)
treebb7e6c8d106961fdcb632c27abea54de3b754249
parentde8dc9039b532f938074eb8504c63d3755d92eb6 (diff)
downloadguix-23a5dcce1d893b8f5c5301ae3c1af863776ed3cf.tar
guix-23a5dcce1d893b8f5c5301ae3c1af863776ed3cf.tar.gz
gnu: grocsvs: Remove package.
This package depends on Python 2 and doesn't build anymore. Upstream doesn't seem active, but if they ever port it to Python 3, they should let people know here: https://github.com/grocsvs/grocsvs/issues/6. * gnu/packages/bioinformatics.scm (grocsvs): Delete.
-rw-r--r--gnu/packages/bioinformatics.scm41
1 files changed, 0 insertions, 41 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 161767c671..5b14e765de 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15607,44 +15607,3 @@ biological processes. SBML is useful for models of metabolism, cell
signaling, and more. It continues to be evolved and expanded by an
international community.")
(license license:lgpl2.1+)))
-
-(define-public grocsvs
- ;; The last release is out of date and new features have been added.
- (let ((commit "ecd956a65093a0b2c41849050e4512d46fecea5d")
- (revision "1"))
- (package
- (name "grocsvs")
- (version (git-version "0.2.6.1" revision commit))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/grocsvs/grocsvs")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "14505725gr7qxc17cxxf0k6lzcwmgi64pija4mwf29aw70qn35cc"))
- (patches (search-patches "grocsvs-dont-use-admiral.patch"))))
- (build-system python-build-system)
- (arguments
- `(#:tests? #f ; No test suite.
- #:python ,python-2)) ; Only python-2 supported.
- (inputs
- `(("python2-h5py" ,python2-h5py)
- ("python2-ipython-cluster-helper" ,python2-ipython-cluster-helper)
- ("python2-networkx" ,python2-networkx)
- ("python2-psutil" ,python2-psutil)
- ("python2-pandas" ,python2-pandas)
- ("python2-pybedtools" ,python2-pybedtools)
- ("python2-pyfaidx" ,python2-pyfaidx)
- ("python2-pygraphviz" ,python2-pygraphviz)
- ("python2-pysam" ,python2-pysam)
- ("python2-scipy" ,python2-scipy)))
- (home-page "https://github.com/grocsvs/grocsvs")
- (synopsis "Genome-wide reconstruction of complex structural variants")
- (description
- "@dfn{Genome-wide Reconstruction of Complex Structural Variants}
-(GROC-SVs) is a software pipeline for identifying large-scale structural
-variants, performing sequence assembly at the breakpoints, and reconstructing
-the complex structural variants using the long-fragment information from the
-10x Genomics platform.")
- (license license:expat))))