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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-03-08 23:29:59 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-03-08 23:31:56 +0100 |
| commit | 22a0c6596921b87dd8cc38dfbdf99e13ae719a7d (patch) | |
| tree | ef7f5538a663570bb0964be737ab982068ed9c53 | |
| parent | be815dbdda155e1e920667a1c34bf264cb20f5b3 (diff) | |
| download | guix-22a0c6596921b87dd8cc38dfbdf99e13ae719a7d.tar guix-22a0c6596921b87dd8cc38dfbdf99e13ae719a7d.tar.gz | |
gnu: Add r-phangorn.
* gnu/packages/bioinformatics.scm (r-phangorn): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a5ad2c57e7..92549d3c75 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10853,6 +10853,34 @@ are optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.") (license license:expat))) +(define-public r-phangorn + (package + (name "r-phangorn") + (version "2.4.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "phangorn" version)) + (sha256 + (base32 + "0xc8k552nxczy19jr0xjjagrzc8x6lafasgk2c099ls8bc1yml1i")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-fastmatch" ,r-fastmatch) + ("r-igraph" ,r-igraph) + ("r-magrittr" ,r-magrittr) + ("r-matrix" ,r-matrix) + ("r-quadprog" ,r-quadprog) + ("r-rcpp" ,r-rcpp))) + (home-page "https://github.com/KlausVigo/phangorn") + (synopsis "Phylogenetic analysis in R") + (description + "Phangorn is a package for phylogenetic analysis in R. It supports +estimation of phylogenetic trees and networks using Maximum Likelihood, +Maximum Parsimony, distance methods and Hadamard conjugation.") + (license license:gpl2+))) + (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) |