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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-04-26 12:19:54 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-04-26 23:47:54 +0200
commit936f23a654d4b1a29840792b1802d78e378275a5 (patch)
treed199c34a1e6b0b4aed78939738571530d213e9a2
parent1c3c00a8a19780290e35bf176691fbd93ac617ac (diff)
downloadguix-936f23a654d4b1a29840792b1802d78e378275a5.tar
guix-936f23a654d4b1a29840792b1802d78e378275a5.tar.gz
gnu: Add r-adamgui.
* gnu/packages/bioconductor.scm (r-adamgui): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
-rw-r--r--gnu/packages/bioconductor.scm48
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fa862d736f..67ee6079c6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1616,6 +1616,54 @@ gene diversity and activity. Each group of genes is called @dfn{Group of
functionally associated genes} (GFAG).")
(license license:gpl2+)))
+(define-public r-adamgui
+ (package
+ (name "r-adamgui")
+ (version "1.10.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ADAMgui" version))
+ (sha256
+ (base32
+ "0n06bb9djigha0249lxx84pn9q0xiryxbv25qsc3p2h46iaxi3wq"))))
+ (properties `((upstream-name . "ADAMgui")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-adam
+ r-colorramps
+ r-data-table
+ r-dplyr
+ r-dt
+ r-ggplot2
+ r-ggpubr
+ r-ggrepel
+ r-ggsignif
+ r-go-db
+ r-gridextra
+ r-knitr
+ r-rcolorbrewer
+ r-reshape2
+ r-shiny
+ r-shinyjs
+ r-stringi
+ r-stringr
+ r-testthat
+ r-varhandle))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/ADAMgui/")
+ (synopsis "GUI for gene activity and diversity analysis")
+ (description
+ "This package @code{ADAMgui} is a @dfn{graphical user interface} (GUI)
+for the @code{ADAM} package. The @code{ADAMgui} package provides two
+shiny-based applications that allows the user to study the output of the
+@code{ADAM} package files through different plots. It's possible, for
+example, to choose a specific @dfn{group of functionally associated
+genes} (GFAG) and observe the gene expression behavior with the plots created
+with the @code{GFAGtargetUi} function. Features such as differential
+expression and fold change can be easily seen with aid of the plots made with
+the @code{GFAGpathUi} function.")
+ (license license:gpl2+)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")