diff options
Diffstat (limited to 'gnu/packages/geo.scm')
| -rw-r--r-- | gnu/packages/geo.scm | 155 |
1 files changed, 131 insertions, 24 deletions
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index 48f7d37b78..b4ac1c52f9 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -101,9 +101,11 @@ #:use-module (gnu packages imagemagick) #:use-module (gnu packages java) #:use-module (gnu packages kde) + #:use-module (gnu packages libunwind) #:use-module (gnu packages libusb) #:use-module (gnu packages linux) #:use-module (gnu packages lua) + #:use-module (gnu packages machine-learning) #:use-module (gnu packages maths) #:use-module (gnu packages multiprecision) #:use-module (gnu packages pcre) @@ -141,7 +143,7 @@ (define-public gmt (package (name "gmt") - (version "6.4.0") + (version "6.5.0") (source (origin (method url-fetch) @@ -149,7 +151,7 @@ "releases/download/" version "/gmt-" version "-src.tar.xz")) (sha256 - (base32 "0wh694cwcw2dz5rsh6pdn9irx08d65iih0vbxz350vzrkkjzyvml")))) + (base32 "07hlqg3adxrz7wqih8pydr44v7j40savcxfjlkaw3y9k82sas8j0")))) (build-system cmake-build-system) (arguments (list #:tests? #false)) ;tests need costline data and caches (inputs @@ -225,15 +227,15 @@ BUFR and WMO GTS abbreviated header formats.") (define-public cdo (package (name "cdo") - (version "2.1.0") + (version "2.4.0") (source (origin (method url-fetch) (uri (string-append - "https://code.mpimet.mpg.de/attachments/download/27481/cdo-" + "https://code.mpimet.mpg.de/attachments/download/29313/cdo-" version ".tar.gz")) (sha256 - (base32 "1k18llghpf3jnjn0xcnhmbg7arb1fiy854qqn9m5c1abjin38wdq")))) + (base32 "0b2d1d8r1lxs422dxajnmvjyhjwfichlkglv3yqm7wq7rjw0yyd4")))) (build-system gnu-build-system) (arguments (list #:configure-flags @@ -258,7 +260,7 @@ BUFR and WMO GTS abbreviated header formats.") (inputs (list curl eccodes fftw hdf5 libxml2 netcdf proj udunits)) (native-inputs - (list pkg-config)) + (list pkg-config python-wrapper)) (home-page "https://code.mpimet.mpg.de/projects/cdo") (synopsis "Climate data operators") (description "@acronym{CDO, Climate Data Operators} is a collection of command-line @@ -470,7 +472,7 @@ topology functions.") (define-public gnome-maps (package (name "gnome-maps") - (version "43.0") ;for libsoup 3 support + (version "44.5") (source (origin (method url-fetch) (uri (string-append "mirror://gnome/sources/" name "/" @@ -478,7 +480,7 @@ topology functions.") name "-" version ".tar.xz")) (sha256 (base32 - "1r1l6ajs6zz316m8zac5r0l3qgdv616xh376bfn2fflcnz7wys08")))) + "026488yb6azwb2sm0yy0iaipk914l3agvb7d8azks4kyjqlslyb8")))) (build-system meson-build-system) (arguments (list @@ -520,11 +522,10 @@ topology functions.") glib-networking gnome-online-accounts gsettings-desktop-schemas - gtk+ + gtk libadwaita libgee libgweather4 - libhandy librsvg libsecret libshumate @@ -1230,6 +1231,47 @@ development.") (home-page "https://www.gaia-gis.it/fossil/spatialite_gui/index") (license license:gpl3+))) +(define-public pdal + (package + (name "pdal") + (version "2.7.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/PDAL/PDAL") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0gg5lcshlmn3wwak42xr0b8a8gdr4572d7hrcvxn2291kp2c3096")))) + (build-system cmake-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "ctest" "-E" ;; This test hangs. + "pdal_io_stac_reader_test"))))))) + (native-inputs (list python)) + (inputs (list gdal + h3 + libgeotiff + libunwind + libxml2 + nlohmann-json + openssl + proj + utfcpp + xz + `(,zstd "lib"))) + (home-page "https://pdal.io/") + (synopsis "Point Data Abstraction Library") + (description "PDAL is a C++ library for translating and manipulating point +cloud data. It is very much like the GDAL library which handles raster and +vector data.") + (license license:bsd-3))) + (define-public gdal (package (name "gdal") @@ -1347,6 +1389,42 @@ utilities for data translation and processing.") "The Python Shapefile Library (PyShp) reads and writes ESRI Shapefiles.") (license license:expat))) +(define-public python-verde + (package + (name "python-verde") + (version "1.8.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "verde" version)) + (sha256 + (base32 "1hnh91dsk2dxfbk7p2hv3hajaa396139pd6apabgdrp5b7s54k97")))) + (build-system pyproject-build-system) + (arguments + ;; Tests below fetch data remotely. + (list #:test-flags #~(list "-k" (string-append + "not test_minimal_integration_2d_gps" + " and not test_datasets_locate" + " and not test_fetch_texas_wind" + " and not test_fetch_baja_bathymetry" + " and not test_fetch_rio_magnetic" + " and not test_fetch_california_gps")))) + (native-inputs (list python-cartopy python-distributed)) + (propagated-inputs (list python-dask + python-numpy + python-pandas + python-pooch + python-scikit-learn + python-scipy + python-xarray)) + (home-page "https://github.com/fatiando/verde") + (synopsis "Processing and gridding spatial data, machine-learning style") + (description + "Verde is a Python library for processing spatial data (topography, point +clouds, bathymetry, geophysics surveys, etc) and interpolating them on a 2D +surface (i.e., gridding) with a hint of machine learning.") + (license license:bsd-3))) + (define-public python-cartopy (package (name "python-cartopy") @@ -1912,6 +1990,34 @@ persisted. ") (license license:expat))) +(define-public libmseed + (package + (name "libmseed") + (version "3.1.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/EarthScope/libmseed") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "05sk2h19c7ja98s75b7hbn2cwnjc5l6dr59c23fgnaimmad2rfn7")))) + (build-system gnu-build-system) + (arguments + (list #:make-flags #~(list (string-append "CC=" #$(cc-for-target)) + (string-append "PREFIX=" #$output)) + #:phases #~(modify-phases %standard-phases + (delete 'configure)))) + (home-page "https://earthscope.github.io/libmseed/") + (synopsis "Library for the miniSEED data format") + (description "The miniSEED library provides a framework for manipulation +of SEED data records, a format for commonly used for seismological time +series and related data. The library includes the functionality to read +and write data records, in addition to reconstructing time series +from multiple records.") + (license license:asl2.0))) + (define-public python-rtree (package (name "python-rtree") @@ -2575,7 +2681,7 @@ track your position right from your laptop.") qtbase-5 qtimageformats-5 qtlocation - qtsensors + qtsensors-5 zlib)) (native-inputs (list doxygen @@ -2645,6 +2751,11 @@ orienteering sport.") (guix build python-build-system)) #:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-lapack + (lambda _ + (substitute* "./configure" + (("-lblas") "-lopenblas") + (("-llapack") "-lopenblas")))) (replace 'configure (lambda* (#:key inputs outputs #:allow-other-keys) (let ((shell (search-input-file inputs "/bin/bash"))) @@ -2977,7 +3088,7 @@ growing set of geoscientific methods.") qtkeychain qtlocation qtmultimedia-5 - qtserialport + qtserialport-5 qtsvg-5 qwt ;; saga @@ -3187,23 +3298,19 @@ latitude and longitude.") (define-public gplates (package (name "gplates") - ;; Note: use a pre-release to cope with newer Boost, ref - ;; https://discourse.gplates.org/t/compilation-error-with-boost-1-77/452/3 - (version "2.3.01-beta.3") + (version "2.4") (source (origin - (method url-fetch) - (uri "https://cloudstor.aarnet.edu.au/plus/s\ -/ojsYNOyUYE3evNp/download?path=%2F&files=gplates_2.3.1-beta.3_src.zip") - (file-name (string-append name "-" version ".zip")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/GPlates/GPlates") + (commit (string-append "GPlates-" version)))) (sha256 (base32 - "06i87dfab0cq9gdi5mh6sf9wigawpp0d05zbyslv910443i26gwv")))) + "1awb4igchgpmrvj6blxd1w81c617bs66w6cfrwvf30n6rjlyn6q5")) + (file-name (git-file-name name version)))) (build-system cmake-build-system) (arguments - `(#:configure-flags (list "-DBoost_NO_BOOST_CMAKE=ON") - #:tests? #f)) ;no test target - (native-inputs - (list unzip)) ;for the beta + (list #:tests? #f)) ;no test target (inputs (list boost cgal |