Change setup.cfg so that the bundled zlib and bzip2 are not used. This cannot currently be achieved using "--library z,bz2" as instructed in the setup.py. diff --git a/setup.cfg b/setup.cfg index c054092..080992e 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,7 +1,7 @@ [build_ext] define = SEQAN_HAS_BZIP2,SEQAN_HAS_ZLIB undef = NO_UNIQUE_RC -# libraries = z,bz2 +libraries = z,bz2 ## if using system libraries include-dirs = lib:third-party/zlib:third-party/bzip2:third-party/seqan/core/include:third-party/smhasher # include-dirs = lib