From 6ffdfe6a0121f6e9e6029ef16d1653afc49628d8 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 15 Jun 2018 07:38:27 +0200
Subject: gnu: Add r-riboseqr.

* gnu/packages/bioconductor.scm (r-riboseqr): New variable.
---
 gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8dbbb74b3f..634493d136 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -575,3 +575,31 @@ the counting of genomic sequence reads on CDS, 3'UTR, and 5'UTR, and plotting
 of count data: pairs, log fold-change, codon frequency and coverage
 assessment, principal component analysis on codon coverage.")
     (license license:gpl3)))
+
+(define-public r-riboseqr
+  (package
+    (name "r-riboseqr")
+    (version "1.14.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "riboSeqR" version))
+       (sha256
+        (base32
+         "0xavd1cdhi8qfjn9a1hjhflyg6jq1ydvv56z12gjz572pwz2knvn"))))
+    (properties `((upstream-name . "riboSeqR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-abind" ,r-abind)
+       ("r-bayseq" ,r-bayseq)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-iranges" ,r-iranges)
+       ("r-rsamtools" ,r-rsamtools)
+       ("r-seqlogo" ,r-seqlogo)))
+    (home-page "https://bioconductor.org/packages/riboSeqR/")
+    (synopsis "Analysis of sequencing data from ribosome profiling experiments")
+    (description
+     "This package provides plotting functions, frameshift detection and
+parsing of genetic sequencing data from ribosome profiling experiments.")
+    (license license:gpl3)))
-- 
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