From 6ace9f80f15f7d5fc35e76b0dad7c0d298ad04ad Mon Sep 17 00:00:00 2001
From: Leo Famulari <leo@famulari.name>
Date: Mon, 17 Oct 2016 16:38:21 -0400
Subject: gnu: diffoscope: Update to 61.

* gnu/packages/package-management.scm (diffoscope): Update to 61.
---
 gnu/packages/package-management.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 70a6a49921..b437599db5 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -476,13 +476,13 @@ transactions from C or Python.")
 (define-public diffoscope
   (package
     (name "diffoscope")
-    (version "60")
+    (version "61")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri name version))
               (sha256
                (base32
-                "0qwsnh7sldjlwi4qydn1ljzh3322k2ga45d867ml49xr2wnsivcc"))))
+                "1qpk2l6p9z58s61jfx6adm96f5r21ns128db0876zd6b6h34411p"))))
     (build-system python-build-system)
     (arguments
      `(#:phases (modify-phases %standard-phases
-- 
cgit v1.2.3


From b333d00c3566a8a6b058a35426da96200ebf2c6d Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Mon, 17 Oct 2016 23:47:14 +0300
Subject: gnu: jasper: Update to 1.900.5.

* gnu/packages/image.scm (jasper): Update to 1.900.5.
[source]: Remove patches.
[native-inputs]: Remove unzip.
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2008-3522.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1577.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch,
gnu/packages/patches/jasper-CVE-2016-2089.patch,
gnu/packages/patches/jasper-CVE-2016-2116.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
---
 gnu/packages/image.scm                             |  22 +-
 gnu/packages/patches/jasper-CVE-2007-2721.patch    |  20 -
 gnu/packages/patches/jasper-CVE-2008-3520.patch    | 931 ---------------------
 gnu/packages/patches/jasper-CVE-2008-3522.patch    |  14 -
 .../jasper-CVE-2011-4516-and-CVE-2011-4517.patch   |  31 -
 gnu/packages/patches/jasper-CVE-2014-8137.patch    |  64 --
 gnu/packages/patches/jasper-CVE-2014-8138.patch    |  21 -
 gnu/packages/patches/jasper-CVE-2014-8157.patch    |  19 -
 gnu/packages/patches/jasper-CVE-2014-8158.patch    | 336 --------
 gnu/packages/patches/jasper-CVE-2014-9029.patch    |  36 -
 gnu/packages/patches/jasper-CVE-2016-1577.patch    |  19 -
 gnu/packages/patches/jasper-CVE-2016-1867.patch    |  18 -
 gnu/packages/patches/jasper-CVE-2016-2089.patch    |  90 --
 gnu/packages/patches/jasper-CVE-2016-2116.patch    |  19 -
 14 files changed, 3 insertions(+), 1637 deletions(-)
 delete mode 100644 gnu/packages/patches/jasper-CVE-2007-2721.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2008-3520.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2008-3522.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2014-8137.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2014-8138.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2014-8157.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2014-8158.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2014-9029.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2016-1577.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2016-1867.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2016-2089.patch
 delete mode 100644 gnu/packages/patches/jasper-CVE-2016-2116.patch

(limited to 'gnu/packages')

diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index 7455bb8889..ed14e83ead 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -781,31 +781,15 @@ convert, manipulate, filter and display a wide variety of image formats.")
 (define-public jasper
   (package
     (name "jasper")
-    (version "1.900.1")
+    (version "1.900.5")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://www.ece.uvic.ca/~frodo/jasper"
-                                  "/software/jasper-" version ".zip"))
+                                  "/software/jasper-" version ".tar.gz"))
               (sha256
                (base32
-                "154l7zk7yh3v8l2l6zm5s2alvd2fzkp6c9i18iajfbna5af5m43b"))
-              (patches (search-patches
-                        "jasper-CVE-2007-2721.patch"
-                        "jasper-CVE-2008-3520.patch"
-                        "jasper-CVE-2008-3522.patch"
-                        "jasper-CVE-2011-4516-and-CVE-2011-4517.patch"
-                        "jasper-CVE-2014-8137.patch"
-                        "jasper-CVE-2014-8138.patch"
-                        "jasper-CVE-2014-8157.patch"
-                        "jasper-CVE-2014-8158.patch"
-                        "jasper-CVE-2014-9029.patch"
-                        "jasper-CVE-2016-1577.patch"
-                        "jasper-CVE-2016-1867.patch"
-                        "jasper-CVE-2016-2089.patch"
-                        "jasper-CVE-2016-2116.patch"))))
+                "1fvy4ngc6064g128q4484qpinsn05y9qw6lrccc4czhalla2w26m"))))
     (build-system gnu-build-system)
-    (native-inputs
-     `(("unzip" ,unzip)))
     (synopsis "JPEG-2000 library")
     (description "The JasPer Project is an initiative to provide a reference
 implementation of the codec specified in the JPEG-2000 Part-1 standard (i.e.,
diff --git a/gnu/packages/patches/jasper-CVE-2007-2721.patch b/gnu/packages/patches/jasper-CVE-2007-2721.patch
deleted file mode 100644
index 9838247894..0000000000
--- a/gnu/packages/patches/jasper-CVE-2007-2721.patch
+++ /dev/null
@@ -1,20 +0,0 @@
-Fix CVE-2007-2721 (heap corruption in jpc_qcx_getcompparms()).
-
-Copied from Fedora.
-
-http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/patch-libjasper-stepsizes-overflow.diff
-
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_cs.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_cs.c	2007-04-06 01:29:02.000000000 +0200
-@@ -982,7 +982,10 @@ static int jpc_qcx_getcompparms(jpc_qcxc
- 		compparms->numstepsizes = (len - n) / 2;
- 		break;
- 	}
--	if (compparms->numstepsizes > 0) {
-+	if (compparms->numstepsizes > 3 * JPC_MAXRLVLS + 1) {
-+		jpc_qcx_destroycompparms(compparms);
-+                return -1;
-+        } else if (compparms->numstepsizes > 0) {
- 		compparms->stepsizes = jas_malloc(compparms->numstepsizes *
- 		  sizeof(uint_fast16_t));
- 		assert(compparms->stepsizes);
diff --git a/gnu/packages/patches/jasper-CVE-2008-3520.patch b/gnu/packages/patches/jasper-CVE-2008-3520.patch
deleted file mode 100644
index 6c8772656e..0000000000
--- a/gnu/packages/patches/jasper-CVE-2008-3520.patch
+++ /dev/null
@@ -1,931 +0,0 @@
-Fix CVE-2008-3520 (multiple integer overflows in jas_alloc calls).
-
-Copied from Fedora.
-
-http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-1.900.1-CVE-2008-3520.patch
-https://bugzilla.redhat.com/show_bug.cgi?id=461476
-
-diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_cm.c jasper-1.900.1/src/libjasper/base/jas_cm.c
---- jasper-1.900.1.orig/src/libjasper/base/jas_cm.c	2007-01-19 22:43:05.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/base/jas_cm.c	2009-10-22 10:27:45.000000000 +0200
-@@ -704,8 +704,7 @@ static int jas_cmpxformseq_resize(jas_cm
- {
- 	jas_cmpxform_t **p;
- 	assert(n >= pxformseq->numpxforms);
--	p = (!pxformseq->pxforms) ? jas_malloc(n * sizeof(jas_cmpxform_t *)) :
--	  jas_realloc(pxformseq->pxforms, n * sizeof(jas_cmpxform_t *));
-+	p = jas_realloc2(pxformseq->pxforms, n, sizeof(jas_cmpxform_t *));
- 	if (!p) {
- 		return -1;
- 	}
-@@ -889,13 +888,13 @@ static int jas_cmshapmatlut_set(jas_cmsh
- 	jas_cmshapmatlut_cleanup(lut);
- 	if (curv->numents == 0) {
- 		lut->size = 2;
--		if (!(lut->data = jas_malloc(lut->size * sizeof(jas_cmreal_t))))
-+		if (!(lut->data = jas_alloc2(lut->size, sizeof(jas_cmreal_t))))
- 			goto error;
- 		lut->data[0] = 0.0;
- 		lut->data[1] = 1.0;
- 	} else if (curv->numents == 1) {
- 		lut->size = 256;
--		if (!(lut->data = jas_malloc(lut->size * sizeof(jas_cmreal_t))))
-+		if (!(lut->data = jas_alloc2(lut->size, sizeof(jas_cmreal_t))))
- 			goto error;
- 		gamma = curv->ents[0] / 256.0;
- 		for (i = 0; i < lut->size; ++i) {
-@@ -903,7 +902,7 @@ static int jas_cmshapmatlut_set(jas_cmsh
- 		}
- 	} else {
- 		lut->size = curv->numents;
--		if (!(lut->data = jas_malloc(lut->size * sizeof(jas_cmreal_t))))
-+		if (!(lut->data = jas_alloc2(lut->size, sizeof(jas_cmreal_t))))
- 			goto error;
- 		for (i = 0; i < lut->size; ++i) {
- 			lut->data[i] = curv->ents[i] / 65535.0;
-@@ -953,7 +952,7 @@ static int jas_cmshapmatlut_invert(jas_c
- 			return -1;
- 		}
- 	}
--	if (!(invlut->data = jas_malloc(n * sizeof(jas_cmreal_t))))
-+	if (!(invlut->data = jas_alloc2(n, sizeof(jas_cmreal_t))))
- 		return -1;
- 	invlut->size = n;
- 	for (i = 0; i < invlut->size; ++i) {
-diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_icc.c jasper-1.900.1/src/libjasper/base/jas_icc.c
---- jasper-1.900.1.orig/src/libjasper/base/jas_icc.c	2007-01-19 22:43:05.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/base/jas_icc.c	2009-10-22 10:27:45.000000000 +0200
-@@ -373,7 +373,7 @@ int jas_iccprof_save(jas_iccprof_t *prof
- 	jas_icctagtab_t *tagtab;
- 
- 	tagtab = &prof->tagtab;
--	if (!(tagtab->ents = jas_malloc(prof->attrtab->numattrs *
-+	if (!(tagtab->ents = jas_alloc2(prof->attrtab->numattrs,
- 	  sizeof(jas_icctagtabent_t))))
- 		goto error;
- 	tagtab->numents = prof->attrtab->numattrs;
-@@ -522,7 +522,7 @@ static int jas_iccprof_gettagtab(jas_str
- 	}
- 	if (jas_iccgetuint32(in, &tagtab->numents))
- 		goto error;
--	if (!(tagtab->ents = jas_malloc(tagtab->numents *
-+	if (!(tagtab->ents = jas_alloc2(tagtab->numents,
- 	  sizeof(jas_icctagtabent_t))))
- 		goto error;
- 	tagtabent = tagtab->ents;
-@@ -743,8 +743,7 @@ static int jas_iccattrtab_resize(jas_icc
- {
- 	jas_iccattr_t *newattrs;
- 	assert(maxents >= tab->numattrs);
--	newattrs = tab->attrs ? jas_realloc(tab->attrs, maxents *
--	  sizeof(jas_iccattr_t)) : jas_malloc(maxents * sizeof(jas_iccattr_t));
-+	newattrs = jas_realloc2(tab->attrs, maxents, sizeof(jas_iccattr_t));
- 	if (!newattrs)
- 		return -1;
- 	tab->attrs = newattrs;
-@@ -999,7 +998,7 @@ static int jas_icccurv_input(jas_iccattr
- 
- 	if (jas_iccgetuint32(in, &curv->numents))
- 		goto error;
--	if (!(curv->ents = jas_malloc(curv->numents * sizeof(jas_iccuint16_t))))
-+	if (!(curv->ents = jas_alloc2(curv->numents, sizeof(jas_iccuint16_t))))
- 		goto error;
- 	for (i = 0; i < curv->numents; ++i) {
- 		if (jas_iccgetuint16(in, &curv->ents[i]))
-@@ -1100,7 +1099,7 @@ static int jas_icctxtdesc_input(jas_icca
- 	if (jas_iccgetuint32(in, &txtdesc->uclangcode) ||
- 	  jas_iccgetuint32(in, &txtdesc->uclen))
- 		goto error;
--	if (!(txtdesc->ucdata = jas_malloc(txtdesc->uclen * 2)))
-+	if (!(txtdesc->ucdata = jas_alloc2(txtdesc->uclen, 2)))
- 		goto error;
- 	if (jas_stream_read(in, txtdesc->ucdata, txtdesc->uclen * 2) !=
- 	  JAS_CAST(int, txtdesc->uclen * 2))
-@@ -1292,17 +1291,17 @@ static int jas_icclut8_input(jas_iccattr
- 	  jas_iccgetuint16(in, &lut8->numouttabents))
- 		goto error;
- 	clutsize = jas_iccpowi(lut8->clutlen, lut8->numinchans) * lut8->numoutchans;
--	if (!(lut8->clut = jas_malloc(clutsize * sizeof(jas_iccuint8_t))) ||
--	  !(lut8->intabsbuf = jas_malloc(lut8->numinchans *
--	  lut8->numintabents * sizeof(jas_iccuint8_t))) ||
--	  !(lut8->intabs = jas_malloc(lut8->numinchans *
-+	if (!(lut8->clut = jas_alloc2(clutsize, sizeof(jas_iccuint8_t))) ||
-+	  !(lut8->intabsbuf = jas_alloc3(lut8->numinchans,
-+	  lut8->numintabents, sizeof(jas_iccuint8_t))) ||
-+	  !(lut8->intabs = jas_alloc2(lut8->numinchans,
- 	  sizeof(jas_iccuint8_t *))))
- 		goto error;
- 	for (i = 0; i < lut8->numinchans; ++i)
- 		lut8->intabs[i] = &lut8->intabsbuf[i * lut8->numintabents];
--	if (!(lut8->outtabsbuf = jas_malloc(lut8->numoutchans *
--	  lut8->numouttabents * sizeof(jas_iccuint8_t))) ||
--	  !(lut8->outtabs = jas_malloc(lut8->numoutchans *
-+	if (!(lut8->outtabsbuf = jas_alloc3(lut8->numoutchans,
-+	  lut8->numouttabents, sizeof(jas_iccuint8_t))) ||
-+	  !(lut8->outtabs = jas_alloc2(lut8->numoutchans,
- 	  sizeof(jas_iccuint8_t *))))
- 		goto error;
- 	for (i = 0; i < lut8->numoutchans; ++i)
-@@ -1461,17 +1460,17 @@ static int jas_icclut16_input(jas_iccatt
- 	  jas_iccgetuint16(in, &lut16->numouttabents))
- 		goto error;
- 	clutsize = jas_iccpowi(lut16->clutlen, lut16->numinchans) * lut16->numoutchans;
--	if (!(lut16->clut = jas_malloc(clutsize * sizeof(jas_iccuint16_t))) ||
--	  !(lut16->intabsbuf = jas_malloc(lut16->numinchans *
--	  lut16->numintabents * sizeof(jas_iccuint16_t))) ||
--	  !(lut16->intabs = jas_malloc(lut16->numinchans *
-+	if (!(lut16->clut = jas_alloc2(clutsize, sizeof(jas_iccuint16_t))) ||
-+	  !(lut16->intabsbuf = jas_alloc3(lut16->numinchans,
-+	  lut16->numintabents, sizeof(jas_iccuint16_t))) ||
-+	  !(lut16->intabs = jas_alloc2(lut16->numinchans,
- 	  sizeof(jas_iccuint16_t *))))
- 		goto error;
- 	for (i = 0; i < lut16->numinchans; ++i)
- 		lut16->intabs[i] = &lut16->intabsbuf[i * lut16->numintabents];
--	if (!(lut16->outtabsbuf = jas_malloc(lut16->numoutchans *
--	  lut16->numouttabents * sizeof(jas_iccuint16_t))) ||
--	  !(lut16->outtabs = jas_malloc(lut16->numoutchans *
-+	if (!(lut16->outtabsbuf = jas_alloc3(lut16->numoutchans,
-+	  lut16->numouttabents, sizeof(jas_iccuint16_t))) ||
-+	  !(lut16->outtabs = jas_alloc2(lut16->numoutchans,
- 	  sizeof(jas_iccuint16_t *))))
- 		goto error;
- 	for (i = 0; i < lut16->numoutchans; ++i)
-diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_image.c jasper-1.900.1/src/libjasper/base/jas_image.c
---- jasper-1.900.1.orig/src/libjasper/base/jas_image.c	2007-01-19 22:43:05.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/base/jas_image.c	2009-10-22 10:27:45.000000000 +0200
-@@ -142,7 +142,7 @@ jas_image_t *jas_image_create(int numcmp
- 	image->inmem_ = true;
- 
- 	/* Allocate memory for the per-component information. */
--	if (!(image->cmpts_ = jas_malloc(image->maxcmpts_ *
-+	if (!(image->cmpts_ = jas_alloc2(image->maxcmpts_,
- 	  sizeof(jas_image_cmpt_t *)))) {
- 		jas_image_destroy(image);
- 		return 0;
-@@ -774,8 +774,7 @@ static int jas_image_growcmpts(jas_image
- 	jas_image_cmpt_t **newcmpts;
- 	int cmptno;
- 
--	newcmpts = (!image->cmpts_) ? jas_malloc(maxcmpts * sizeof(jas_image_cmpt_t *)) :
--	  jas_realloc(image->cmpts_, maxcmpts * sizeof(jas_image_cmpt_t *));
-+	newcmpts = jas_realloc2(image->cmpts_, maxcmpts, sizeof(jas_image_cmpt_t *));
- 	if (!newcmpts) {
- 		return -1;
- 	}
-diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_malloc.c jasper-1.900.1/src/libjasper/base/jas_malloc.c
---- jasper-1.900.1.orig/src/libjasper/base/jas_malloc.c	2007-01-19 22:43:05.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/base/jas_malloc.c	2009-10-22 10:27:45.000000000 +0200
-@@ -76,6 +76,9 @@
- 
- /* We need the prototype for memset. */
- #include <string.h>
-+#include <limits.h>
-+#include <errno.h>
-+#include <stdint.h>
- 
- #include "jasper/jas_malloc.h"
- 
-@@ -113,18 +116,50 @@ void jas_free(void *ptr)
- 
- void *jas_realloc(void *ptr, size_t size)
- {
--	return realloc(ptr, size);
-+	return ptr ? realloc(ptr, size) : malloc(size);
- }
- 
--void *jas_calloc(size_t nmemb, size_t size)
-+void *jas_realloc2(void *ptr, size_t nmemb, size_t size)
-+{
-+	if (!ptr)
-+		return jas_alloc2(nmemb, size);
-+	if (nmemb && SIZE_MAX / nmemb < size) {
-+		errno = ENOMEM;
-+		return NULL;
-+	}
-+	return jas_realloc(ptr, nmemb * size);
-+
-+}
-+
-+void *jas_alloc2(size_t nmemb, size_t size)
-+{
-+	if (nmemb && SIZE_MAX / nmemb < size) {
-+		errno = ENOMEM;
-+		return NULL;
-+	}
-+
-+	return jas_malloc(nmemb * size);
-+}
-+
-+void *jas_alloc3(size_t a, size_t b, size_t c)
- {
--	void *ptr;
- 	size_t n;
--	n = nmemb * size;
--	if (!(ptr = jas_malloc(n * sizeof(char)))) {
--		return 0;
-+
-+	if (a && SIZE_MAX / a < b) {
-+		errno = ENOMEM;
-+		return NULL;
- 	}
--	memset(ptr, 0, n);
-+
-+	return jas_alloc2(a*b, c);
-+}
-+
-+void *jas_calloc(size_t nmemb, size_t size)
-+{
-+	void *ptr;
-+
-+	ptr = jas_alloc2(nmemb, size);
-+	if (ptr)
-+		memset(ptr, 0, nmemb*size);
- 	return ptr;
- }
- 
-diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_seq.c jasper-1.900.1/src/libjasper/base/jas_seq.c
---- jasper-1.900.1.orig/src/libjasper/base/jas_seq.c	2007-01-19 22:43:05.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/base/jas_seq.c	2009-10-22 10:27:45.000000000 +0200
-@@ -114,7 +114,7 @@ jas_matrix_t *jas_matrix_create(int numr
- 	matrix->datasize_ = numrows * numcols;
- 
- 	if (matrix->maxrows_ > 0) {
--		if (!(matrix->rows_ = jas_malloc(matrix->maxrows_ *
-+		if (!(matrix->rows_ = jas_alloc2(matrix->maxrows_,
- 		  sizeof(jas_seqent_t *)))) {
- 			jas_matrix_destroy(matrix);
- 			return 0;
-@@ -122,7 +122,7 @@ jas_matrix_t *jas_matrix_create(int numr
- 	}
- 
- 	if (matrix->datasize_ > 0) {
--		if (!(matrix->data_ = jas_malloc(matrix->datasize_ *
-+		if (!(matrix->data_ = jas_alloc2(matrix->datasize_,
- 		  sizeof(jas_seqent_t)))) {
- 			jas_matrix_destroy(matrix);
- 			return 0;
-@@ -220,7 +220,7 @@ void jas_matrix_bindsub(jas_matrix_t *ma
- 	mat0->numrows_ = r1 - r0 + 1;
- 	mat0->numcols_ = c1 - c0 + 1;
- 	mat0->maxrows_ = mat0->numrows_;
--	mat0->rows_ = jas_malloc(mat0->maxrows_ * sizeof(jas_seqent_t *));
-+	mat0->rows_ = jas_alloc2(mat0->maxrows_, sizeof(jas_seqent_t *));
- 	for (i = 0; i < mat0->numrows_; ++i) {
- 		mat0->rows_[i] = mat1->rows_[r0 + i] + c0;
- 	}
-diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_stream.c jasper-1.900.1/src/libjasper/base/jas_stream.c
---- jasper-1.900.1.orig/src/libjasper/base/jas_stream.c	2007-01-19 22:43:05.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/base/jas_stream.c	2009-10-22 10:27:45.000000000 +0200
-@@ -212,7 +212,7 @@ jas_stream_t *jas_stream_memopen(char *b
- 	if (buf) {
- 		obj->buf_ = (unsigned char *) buf;
- 	} else {
--		obj->buf_ = jas_malloc(obj->bufsize_ * sizeof(char));
-+		obj->buf_ = jas_malloc(obj->bufsize_);
- 		obj->myalloc_ = 1;
- 	}
- 	if (!obj->buf_) {
-@@ -992,7 +992,7 @@ static int mem_resize(jas_stream_memobj_
- 	unsigned char *buf;
- 
- 	assert(m->buf_);
--	if (!(buf = jas_realloc(m->buf_, bufsize * sizeof(unsigned char)))) {
-+	if (!(buf = jas_realloc(m->buf_, bufsize))) {
- 		return -1;
- 	}
- 	m->buf_ = buf;
-diff -pruN jasper-1.900.1.orig/src/libjasper/bmp/bmp_dec.c jasper-1.900.1/src/libjasper/bmp/bmp_dec.c
---- jasper-1.900.1.orig/src/libjasper/bmp/bmp_dec.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/bmp/bmp_dec.c	2009-10-22 10:27:45.000000000 +0200
-@@ -283,7 +283,7 @@ static bmp_info_t *bmp_getinfo(jas_strea
- 	}
- 
- 	if (info->numcolors > 0) {
--		if (!(info->palents = jas_malloc(info->numcolors *
-+		if (!(info->palents = jas_alloc2(info->numcolors,
- 		  sizeof(bmp_palent_t)))) {
- 			bmp_info_destroy(info);
- 			return 0;
-diff -pruN jasper-1.900.1.orig/src/libjasper/include/jasper/jas_malloc.h jasper-1.900.1/src/libjasper/include/jasper/jas_malloc.h
---- jasper-1.900.1.orig/src/libjasper/include/jasper/jas_malloc.h	2007-01-19 22:43:04.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/include/jasper/jas_malloc.h	2009-10-22 10:27:45.000000000 +0200
-@@ -95,6 +95,9 @@ extern "C" {
- #define	jas_free	MEMFREE
- #define	jas_realloc	MEMREALLOC
- #define	jas_calloc	MEMCALLOC
-+#define jas_alloc2(a, b)	MEMALLOC((a)*(b))
-+#define jas_alloc3(a, b, c)	MEMALLOC((a)*(b)*(c))
-+#define jas_realloc2(p, a, b)	MEMREALLOC((p), (a)*(b))
- #endif
- 
- /******************************************************************************\
-@@ -115,6 +118,12 @@ void *jas_realloc(void *ptr, size_t size
- /* Allocate a block of memory and initialize the contents to zero. */
- void *jas_calloc(size_t nmemb, size_t size);
- 
-+/* size-checked double allocation .*/
-+void *jas_alloc2(size_t, size_t);
-+
-+void *jas_alloc3(size_t, size_t, size_t);
-+
-+void *jas_realloc2(void *, size_t, size_t);
- #endif
- 
- #ifdef __cplusplus
-diff -pruN jasper-1.900.1.orig/src/libjasper/jp2/jp2_cod.c jasper-1.900.1/src/libjasper/jp2/jp2_cod.c
---- jasper-1.900.1.orig/src/libjasper/jp2/jp2_cod.c	2007-01-19 22:43:05.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jp2/jp2_cod.c	2009-10-22 10:30:24.000000000 +0200
-@@ -247,7 +247,7 @@ jp2_box_t *jp2_box_get(jas_stream_t *in)
- 	box = 0;
- 	tmpstream = 0;
- 
--	if (!(box = jas_malloc(sizeof(jp2_box_t)))) {
-+	if (!(box = jas_calloc(1, sizeof(jp2_box_t)))) {
- 		goto error;
- 	}
- 	box->ops = &jp2_boxinfo_unk.ops;
-@@ -372,7 +372,7 @@ static int jp2_bpcc_getdata(jp2_box_t *b
- 	jp2_bpcc_t *bpcc = &box->data.bpcc;
- 	unsigned int i;
- 	bpcc->numcmpts = box->datalen;
--	if (!(bpcc->bpcs = jas_malloc(bpcc->numcmpts * sizeof(uint_fast8_t)))) {
-+	if (!(bpcc->bpcs = jas_alloc2(bpcc->numcmpts, sizeof(uint_fast8_t)))) {
- 		return -1;
- 	}
- 	for (i = 0; i < bpcc->numcmpts; ++i) {
-@@ -416,7 +416,7 @@ static int jp2_colr_getdata(jp2_box_t *b
- 		break;
- 	case JP2_COLR_ICC:
- 		colr->iccplen = box->datalen - 3;
--		if (!(colr->iccp = jas_malloc(colr->iccplen * sizeof(uint_fast8_t)))) {
-+		if (!(colr->iccp = jas_alloc2(colr->iccplen, sizeof(uint_fast8_t)))) {
- 			return -1;
- 		}
- 		if (jas_stream_read(in, colr->iccp, colr->iccplen) != colr->iccplen) {
-@@ -453,7 +453,7 @@ static int jp2_cdef_getdata(jp2_box_t *b
- 	if (jp2_getuint16(in, &cdef->numchans)) {
- 		return -1;
- 	}
--	if (!(cdef->ents = jas_malloc(cdef->numchans * sizeof(jp2_cdefchan_t)))) {
-+	if (!(cdef->ents = jas_alloc2(cdef->numchans, sizeof(jp2_cdefchan_t)))) {
- 		return -1;
- 	}
- 	for (channo = 0; channo < cdef->numchans; ++channo) {
-@@ -766,7 +766,7 @@ static int jp2_cmap_getdata(jp2_box_t *b
- 	unsigned int i;
- 
- 	cmap->numchans = (box->datalen) / 4;
--	if (!(cmap->ents = jas_malloc(cmap->numchans * sizeof(jp2_cmapent_t)))) {
-+	if (!(cmap->ents = jas_alloc2(cmap->numchans, sizeof(jp2_cmapent_t)))) {
- 		return -1;
- 	}
- 	for (i = 0; i < cmap->numchans; ++i) {
-@@ -828,10 +828,10 @@ static int jp2_pclr_getdata(jp2_box_t *b
- 		return -1;
- 	}
- 	lutsize = pclr->numlutents * pclr->numchans;
--	if (!(pclr->lutdata = jas_malloc(lutsize * sizeof(int_fast32_t)))) {
-+	if (!(pclr->lutdata = jas_alloc2(lutsize, sizeof(int_fast32_t)))) {
- 		return -1;
- 	}
--	if (!(pclr->bpc = jas_malloc(pclr->numchans * sizeof(uint_fast8_t)))) {
-+	if (!(pclr->bpc = jas_alloc2(pclr->numchans, sizeof(uint_fast8_t)))) {
- 		return -1;
- 	}
- 	for (i = 0; i < pclr->numchans; ++i) {
-diff -pruN jasper-1.900.1.orig/src/libjasper/jp2/jp2_dec.c jasper-1.900.1/src/libjasper/jp2/jp2_dec.c
---- jasper-1.900.1.orig/src/libjasper/jp2/jp2_dec.c	2007-01-19 22:43:05.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jp2/jp2_dec.c	2009-10-22 10:27:45.000000000 +0200
-@@ -336,7 +336,7 @@ jas_image_t *jp2_decode(jas_stream_t *in
- 	}
- 
- 	/* Allocate space for the channel-number to component-number LUT. */
--	if (!(dec->chantocmptlut = jas_malloc(dec->numchans * sizeof(uint_fast16_t)))) {
-+	if (!(dec->chantocmptlut = jas_alloc2(dec->numchans, sizeof(uint_fast16_t)))) {
- 		jas_eprintf("error: no memory\n");
- 		goto error;
- 	}
-@@ -354,7 +354,7 @@ jas_image_t *jp2_decode(jas_stream_t *in
- 			if (cmapent->map == JP2_CMAP_DIRECT) {
- 				dec->chantocmptlut[channo] = channo;
- 			} else if (cmapent->map == JP2_CMAP_PALETTE) {
--				lutents = jas_malloc(pclrd->numlutents * sizeof(int_fast32_t));
-+				lutents = jas_alloc2(pclrd->numlutents, sizeof(int_fast32_t));
- 				for (i = 0; i < pclrd->numlutents; ++i) {
- 					lutents[i] = pclrd->lutdata[cmapent->pcol + i * pclrd->numchans];
- 				}
-diff -pruN jasper-1.900.1.orig/src/libjasper/jp2/jp2_enc.c jasper-1.900.1/src/libjasper/jp2/jp2_enc.c
---- jasper-1.900.1.orig/src/libjasper/jp2/jp2_enc.c	2007-01-19 22:43:05.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jp2/jp2_enc.c	2009-10-22 10:27:45.000000000 +0200
-@@ -191,7 +191,7 @@ int sgnd;
- 		}
- 		bpcc = &box->data.bpcc;
- 		bpcc->numcmpts = jas_image_numcmpts(image);
--		if (!(bpcc->bpcs = jas_malloc(bpcc->numcmpts *
-+		if (!(bpcc->bpcs = jas_alloc2(bpcc->numcmpts,
- 		  sizeof(uint_fast8_t)))) {
- 			goto error;
- 		}
-@@ -285,7 +285,7 @@ int sgnd;
- 		}
- 		cdef = &box->data.cdef;
- 		cdef->numchans = jas_image_numcmpts(image);
--		cdef->ents = jas_malloc(cdef->numchans * sizeof(jp2_cdefchan_t));
-+		cdef->ents = jas_alloc2(cdef->numchans, sizeof(jp2_cdefchan_t));
- 		for (i = 0; i < jas_image_numcmpts(image); ++i) {
- 			cdefchanent = &cdef->ents[i];
- 			cdefchanent->channo = i;
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_cs.c jasper-1.900.1/src/libjasper/jpc/jpc_cs.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_cs.c	2009-10-22 09:58:16.000000000 +0200
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_cs.c	2009-10-22 10:27:45.000000000 +0200
-@@ -502,7 +502,7 @@ static int jpc_siz_getparms(jpc_ms_t *ms
- 	  !siz->tileheight || !siz->numcomps) {
- 		return -1;
- 	}
--	if (!(siz->comps = jas_malloc(siz->numcomps * sizeof(jpc_sizcomp_t)))) {
-+	if (!(siz->comps = jas_alloc2(siz->numcomps, sizeof(jpc_sizcomp_t)))) {
- 		return -1;
- 	}
- 	for (i = 0; i < siz->numcomps; ++i) {
-@@ -986,7 +986,7 @@ static int jpc_qcx_getcompparms(jpc_qcxc
- 		jpc_qcx_destroycompparms(compparms);
-                 return -1;
-         } else if (compparms->numstepsizes > 0) {
--		compparms->stepsizes = jas_malloc(compparms->numstepsizes *
-+		compparms->stepsizes = jas_alloc2(compparms->numstepsizes,
- 		  sizeof(uint_fast16_t));
- 		assert(compparms->stepsizes);
- 		for (i = 0; i < compparms->numstepsizes; ++i) {
-@@ -1094,7 +1094,7 @@ static int jpc_ppm_getparms(jpc_ms_t *ms
- 
- 	ppm->len = ms->len - 1;
- 	if (ppm->len > 0) {
--		if (!(ppm->data = jas_malloc(ppm->len * sizeof(unsigned char)))) {
-+		if (!(ppm->data = jas_malloc(ppm->len))) {
- 			goto error;
- 		}
- 		if (JAS_CAST(uint, jas_stream_read(in, ppm->data, ppm->len)) != ppm->len) {
-@@ -1163,7 +1163,7 @@ static int jpc_ppt_getparms(jpc_ms_t *ms
- 	}
- 	ppt->len = ms->len - 1;
- 	if (ppt->len > 0) {
--		if (!(ppt->data = jas_malloc(ppt->len * sizeof(unsigned char)))) {
-+		if (!(ppt->data = jas_malloc(ppt->len))) {
- 			goto error;
- 		}
- 		if (jas_stream_read(in, (char *) ppt->data, ppt->len) != JAS_CAST(int, ppt->len)) {
-@@ -1226,7 +1226,7 @@ static int jpc_poc_getparms(jpc_ms_t *ms
- 	uint_fast8_t tmp;
- 	poc->numpchgs = (cstate->numcomps > 256) ? (ms->len / 9) :
- 	  (ms->len / 7);
--	if (!(poc->pchgs = jas_malloc(poc->numpchgs * sizeof(jpc_pocpchg_t)))) {
-+	if (!(poc->pchgs = jas_alloc2(poc->numpchgs, sizeof(jpc_pocpchg_t)))) {
- 		goto error;
- 	}
- 	for (pchgno = 0, pchg = poc->pchgs; pchgno < poc->numpchgs; ++pchgno,
-@@ -1331,7 +1331,7 @@ static int jpc_crg_getparms(jpc_ms_t *ms
- 	jpc_crgcomp_t *comp;
- 	uint_fast16_t compno;
- 	crg->numcomps = cstate->numcomps;
--	if (!(crg->comps = jas_malloc(cstate->numcomps * sizeof(uint_fast16_t)))) {
-+	if (!(crg->comps = jas_alloc2(cstate->numcomps, sizeof(uint_fast16_t)))) {
- 		return -1;
- 	}
- 	for (compno = 0, comp = crg->comps; compno < cstate->numcomps;
-@@ -1470,7 +1470,7 @@ static int jpc_unk_getparms(jpc_ms_t *ms
- 	cstate = 0;
- 
- 	if (ms->len > 0) {
--		if (!(unk->data = jas_malloc(ms->len * sizeof(unsigned char)))) {
-+		if (!(unk->data = jas_malloc(ms->len))) {
- 			return -1;
- 		}
- 		if (jas_stream_read(in, (char *) unk->data, ms->len) != JAS_CAST(int, ms->len)) {
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_dec.c jasper-1.900.1/src/libjasper/jpc/jpc_dec.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_dec.c	2009-10-22 09:58:16.000000000 +0200
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_dec.c	2009-10-22 10:30:50.000000000 +0200
-@@ -449,7 +449,7 @@ static int jpc_dec_process_sot(jpc_dec_t
- 
- 	if (dec->state == JPC_MH) {
- 
--		compinfos = jas_malloc(dec->numcomps * sizeof(jas_image_cmptparm_t));
-+		compinfos = jas_alloc2(dec->numcomps, sizeof(jas_image_cmptparm_t));
- 		assert(compinfos);
- 		for (cmptno = 0, cmpt = dec->cmpts, compinfo = compinfos;
- 		  cmptno < dec->numcomps; ++cmptno, ++cmpt, ++compinfo) {
-@@ -692,7 +692,7 @@ static int jpc_dec_tileinit(jpc_dec_t *d
- 			tile->realmode = 1;
- 		}
- 		tcomp->numrlvls = ccp->numrlvls;
--		if (!(tcomp->rlvls = jas_malloc(tcomp->numrlvls *
-+		if (!(tcomp->rlvls = jas_alloc2(tcomp->numrlvls,
- 		  sizeof(jpc_dec_rlvl_t)))) {
- 			return -1;
- 		}
-@@ -764,7 +764,7 @@ rlvl->bands = 0;
- 			  rlvl->cbgheightexpn);
- 
- 			rlvl->numbands = (!rlvlno) ? 1 : 3;
--			if (!(rlvl->bands = jas_malloc(rlvl->numbands *
-+			if (!(rlvl->bands = jas_alloc2(rlvl->numbands,
- 			  sizeof(jpc_dec_band_t)))) {
- 				return -1;
- 			}
-@@ -797,7 +797,7 @@ rlvl->bands = 0;
- 
- 				assert(rlvl->numprcs);
- 
--				if (!(band->prcs = jas_malloc(rlvl->numprcs * sizeof(jpc_dec_prc_t)))) {
-+				if (!(band->prcs = jas_alloc2(rlvl->numprcs, sizeof(jpc_dec_prc_t)))) {
- 					return -1;
- 				}
- 
-@@ -834,7 +834,7 @@ rlvl->bands = 0;
- 			if (!(prc->numimsbstagtree = jpc_tagtree_create(prc->numhcblks, prc->numvcblks))) {
- 				return -1;
- 			}
--			if (!(prc->cblks = jas_malloc(prc->numcblks * sizeof(jpc_dec_cblk_t)))) {
-+			if (!(prc->cblks = jas_alloc2(prc->numcblks, sizeof(jpc_dec_cblk_t)))) {
- 				return -1;
- 			}
- 
-@@ -1181,7 +1181,7 @@ static int jpc_dec_process_siz(jpc_dec_t
- 		return -1;
- 	}
- 
--	if (!(dec->cmpts = jas_malloc(dec->numcomps * sizeof(jpc_dec_cmpt_t)))) {
-+	if (!(dec->cmpts = jas_alloc2(dec->numcomps, sizeof(jpc_dec_cmpt_t)))) {
- 		return -1;
- 	}
- 
-@@ -1204,7 +1204,7 @@ static int jpc_dec_process_siz(jpc_dec_t
- 	dec->numhtiles = JPC_CEILDIV(dec->xend - dec->tilexoff, dec->tilewidth);
- 	dec->numvtiles = JPC_CEILDIV(dec->yend - dec->tileyoff, dec->tileheight);
- 	dec->numtiles = dec->numhtiles * dec->numvtiles;
--	if (!(dec->tiles = jas_malloc(dec->numtiles * sizeof(jpc_dec_tile_t)))) {
-+	if (!(dec->tiles = jas_calloc(dec->numtiles, sizeof(jpc_dec_tile_t)))) {
- 		return -1;
- 	}
- 
-@@ -1228,7 +1228,7 @@ static int jpc_dec_process_siz(jpc_dec_t
- 		tile->pkthdrstreampos = 0;
- 		tile->pptstab = 0;
- 		tile->cp = 0;
--		if (!(tile->tcomps = jas_malloc(dec->numcomps *
-+		if (!(tile->tcomps = jas_calloc(dec->numcomps,
- 		  sizeof(jpc_dec_tcomp_t)))) {
- 			return -1;
- 		}
-@@ -1489,7 +1489,7 @@ static jpc_dec_cp_t *jpc_dec_cp_create(u
- 	cp->numlyrs = 0;
- 	cp->mctid = 0;
- 	cp->csty = 0;
--	if (!(cp->ccps = jas_malloc(cp->numcomps * sizeof(jpc_dec_ccp_t)))) {
-+	if (!(cp->ccps = jas_alloc2(cp->numcomps, sizeof(jpc_dec_ccp_t)))) {
- 		return 0;
- 	}
- 	if (!(cp->pchglist = jpc_pchglist_create())) {
-@@ -2048,7 +2048,7 @@ jpc_streamlist_t *jpc_streamlist_create(
- 	}
- 	streamlist->numstreams = 0;
- 	streamlist->maxstreams = 100;
--	if (!(streamlist->streams = jas_malloc(streamlist->maxstreams *
-+	if (!(streamlist->streams = jas_alloc2(streamlist->maxstreams,
- 	  sizeof(jas_stream_t *)))) {
- 		jas_free(streamlist);
- 		return 0;
-@@ -2068,8 +2068,8 @@ int jpc_streamlist_insert(jpc_streamlist
- 	/* Grow the array of streams if necessary. */
- 	if (streamlist->numstreams >= streamlist->maxstreams) {
- 		newmaxstreams = streamlist->maxstreams + 1024;
--		if (!(newstreams = jas_realloc(streamlist->streams,
--		  (newmaxstreams + 1024) * sizeof(jas_stream_t *)))) {
-+		if (!(newstreams = jas_realloc2(streamlist->streams,
-+		  (newmaxstreams + 1024), sizeof(jas_stream_t *)))) {
- 			return -1;
- 		}
- 		for (i = streamlist->numstreams; i < streamlist->maxstreams; ++i) {
-@@ -2155,8 +2155,7 @@ int jpc_ppxstab_grow(jpc_ppxstab_t *tab,
- {
- 	jpc_ppxstabent_t **newents;
- 	if (tab->maxents < maxents) {
--		newents = (tab->ents) ? jas_realloc(tab->ents, maxents *
--		  sizeof(jpc_ppxstabent_t *)) : jas_malloc(maxents * sizeof(jpc_ppxstabent_t *));
-+		newents = jas_realloc2(tab->ents, maxents, sizeof(jpc_ppxstabent_t *));
- 		if (!newents) {
- 			return -1;
- 		}
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_enc.c jasper-1.900.1/src/libjasper/jpc/jpc_enc.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_enc.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_enc.c	2009-10-22 10:27:45.000000000 +0200
-@@ -403,7 +403,7 @@ static jpc_enc_cp_t *cp_create(char *opt
- 		vsteplcm *= jas_image_cmptvstep(image, cmptno);
- 	}
- 
--	if (!(cp->ccps = jas_malloc(cp->numcmpts * sizeof(jpc_enc_ccp_t)))) {
-+	if (!(cp->ccps = jas_alloc2(cp->numcmpts, sizeof(jpc_enc_ccp_t)))) {
- 		goto error;
- 	}
- 	for (cmptno = 0, ccp = cp->ccps; cmptno < JAS_CAST(int, cp->numcmpts); ++cmptno,
-@@ -656,7 +656,7 @@ static jpc_enc_cp_t *cp_create(char *opt
- 
- 	if (ilyrrates && numilyrrates > 0) {
- 		tcp->numlyrs = numilyrrates + 1;
--		if (!(tcp->ilyrrates = jas_malloc((tcp->numlyrs - 1) *
-+		if (!(tcp->ilyrrates = jas_alloc2((tcp->numlyrs - 1),
- 		  sizeof(jpc_fix_t)))) {
- 			goto error;
- 		}
-@@ -940,7 +940,7 @@ startoff = jas_stream_getrwcount(enc->ou
- 	siz->tilewidth = cp->tilewidth;
- 	siz->tileheight = cp->tileheight;
- 	siz->numcomps = cp->numcmpts;
--	siz->comps = jas_malloc(siz->numcomps * sizeof(jpc_sizcomp_t));
-+	siz->comps = jas_alloc2(siz->numcomps, sizeof(jpc_sizcomp_t));
- 	assert(siz->comps);
- 	for (i = 0; i < JAS_CAST(int, cp->numcmpts); ++i) {
- 		siz->comps[i].prec = cp->ccps[i].prec;
-@@ -977,7 +977,7 @@ startoff = jas_stream_getrwcount(enc->ou
- 		return -1;
- 	}
- 	crg = &enc->mrk->parms.crg;
--	crg->comps = jas_malloc(crg->numcomps * sizeof(jpc_crgcomp_t));
-+	crg->comps = jas_alloc2(crg->numcomps, sizeof(jpc_crgcomp_t));
- 	if (jpc_putms(enc->out, enc->cstate, enc->mrk)) {
- 		jas_eprintf("cannot write CRG marker\n");
- 		return -1;
-@@ -1955,7 +1955,7 @@ jpc_enc_tile_t *jpc_enc_tile_create(jpc_
- 	tile->mctid = cp->tcp.mctid;
- 
- 	tile->numlyrs = cp->tcp.numlyrs;
--	if (!(tile->lyrsizes = jas_malloc(tile->numlyrs *
-+	if (!(tile->lyrsizes = jas_alloc2(tile->numlyrs,
- 	  sizeof(uint_fast32_t)))) {
- 		goto error;
- 	}
-@@ -1964,7 +1964,7 @@ jpc_enc_tile_t *jpc_enc_tile_create(jpc_
- 	}
- 
- 	/* Allocate an array for the per-tile-component information. */
--	if (!(tile->tcmpts = jas_malloc(cp->numcmpts * sizeof(jpc_enc_tcmpt_t)))) {
-+	if (!(tile->tcmpts = jas_alloc2(cp->numcmpts, sizeof(jpc_enc_tcmpt_t)))) {
- 		goto error;
- 	}
- 	/* Initialize a few members critical for error recovery. */
-@@ -2110,7 +2110,7 @@ static jpc_enc_tcmpt_t *tcmpt_create(jpc
- 	  jas_seq2d_ystart(tcmpt->data), jas_seq2d_xend(tcmpt->data),
- 	  jas_seq2d_yend(tcmpt->data), bandinfos);
- 
--	if (!(tcmpt->rlvls = jas_malloc(tcmpt->numrlvls * sizeof(jpc_enc_rlvl_t)))) {
-+	if (!(tcmpt->rlvls = jas_alloc2(tcmpt->numrlvls, sizeof(jpc_enc_rlvl_t)))) {
- 		goto error;
- 	}
- 	for (rlvlno = 0, rlvl = tcmpt->rlvls; rlvlno < tcmpt->numrlvls;
-@@ -2213,7 +2213,7 @@ static jpc_enc_rlvl_t *rlvl_create(jpc_e
- 	rlvl->numvprcs = JPC_FLOORDIVPOW2(brprcbry - tlprctly, rlvl->prcheightexpn);
- 	rlvl->numprcs = rlvl->numhprcs * rlvl->numvprcs;
- 
--	if (!(rlvl->bands = jas_malloc(rlvl->numbands * sizeof(jpc_enc_band_t)))) {
-+	if (!(rlvl->bands = jas_alloc2(rlvl->numbands, sizeof(jpc_enc_band_t)))) {
- 		goto error;
- 	}
- 	for (bandno = 0, band = rlvl->bands; bandno < rlvl->numbands;
-@@ -2290,7 +2290,7 @@ if (bandinfo->xstart != bandinfo->xend &
- 	band->synweight = bandinfo->synenergywt;
- 
- if (band->data) {
--	if (!(band->prcs = jas_malloc(rlvl->numprcs * sizeof(jpc_enc_prc_t)))) {
-+	if (!(band->prcs = jas_alloc2(rlvl->numprcs, sizeof(jpc_enc_prc_t)))) {
- 		goto error;
- 	}
- 	for (prcno = 0, prc = band->prcs; prcno < rlvl->numprcs; ++prcno,
-@@ -2422,7 +2422,7 @@ if (!rlvlno) {
- 			goto error;
- 		}
- 
--		if (!(prc->cblks = jas_malloc(prc->numcblks * sizeof(jpc_enc_cblk_t)))) {
-+		if (!(prc->cblks = jas_alloc2(prc->numcblks, sizeof(jpc_enc_cblk_t)))) {
- 			goto error;
- 		}
- 		for (cblkno = 0, cblk = prc->cblks; cblkno < prc->numcblks;
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_mqdec.c jasper-1.900.1/src/libjasper/jpc/jpc_mqdec.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_mqdec.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_mqdec.c	2009-10-22 10:27:45.000000000 +0200
-@@ -118,7 +118,7 @@ jpc_mqdec_t *jpc_mqdec_create(int maxctx
- 	mqdec->in = in;
- 	mqdec->maxctxs = maxctxs;
- 	/* Allocate memory for the per-context state information. */
--	if (!(mqdec->ctxs = jas_malloc(mqdec->maxctxs * sizeof(jpc_mqstate_t *)))) {
-+	if (!(mqdec->ctxs = jas_alloc2(mqdec->maxctxs, sizeof(jpc_mqstate_t *)))) {
- 		goto error;
- 	}
- 	/* Set the current context to the first context. */
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_mqenc.c jasper-1.900.1/src/libjasper/jpc/jpc_mqenc.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_mqenc.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_mqenc.c	2009-10-22 10:27:45.000000000 +0200
-@@ -197,7 +197,7 @@ jpc_mqenc_t *jpc_mqenc_create(int maxctx
- 	mqenc->maxctxs = maxctxs;
- 
- 	/* Allocate memory for the per-context state information. */
--	if (!(mqenc->ctxs = jas_malloc(mqenc->maxctxs * sizeof(jpc_mqstate_t *)))) {
-+	if (!(mqenc->ctxs = jas_alloc2(mqenc->maxctxs, sizeof(jpc_mqstate_t *)))) {
- 		goto error;
- 	}
- 
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_qmfb.c jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_qmfb.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c	2009-10-22 10:27:45.000000000 +0200
-@@ -321,7 +321,7 @@ void jpc_qmfb_split_row(jpc_fix_t *a, in
- #if !defined(HAVE_VLA)
- 	/* Get a buffer. */
- 	if (bufsize > QMFB_SPLITBUFSIZE) {
--		if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) {
-+		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
- 			/* We have no choice but to commit suicide in this case. */
- 			abort();
- 		}
-@@ -389,7 +389,7 @@ void jpc_qmfb_split_col(jpc_fix_t *a, in
- #if !defined(HAVE_VLA)
- 	/* Get a buffer. */
- 	if (bufsize > QMFB_SPLITBUFSIZE) {
--		if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) {
-+		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
- 			/* We have no choice but to commit suicide in this case. */
- 			abort();
- 		}
-@@ -460,7 +460,7 @@ void jpc_qmfb_split_colgrp(jpc_fix_t *a,
- #if !defined(HAVE_VLA)
- 	/* Get a buffer. */
- 	if (bufsize > QMFB_SPLITBUFSIZE) {
--		if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) {
-+		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
- 			/* We have no choice but to commit suicide in this case. */
- 			abort();
- 		}
-@@ -549,7 +549,7 @@ void jpc_qmfb_split_colres(jpc_fix_t *a,
- #if !defined(HAVE_VLA)
- 	/* Get a buffer. */
- 	if (bufsize > QMFB_SPLITBUFSIZE) {
--		if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) {
-+		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
- 			/* We have no choice but to commit suicide in this case. */
- 			abort();
- 		}
-@@ -633,7 +633,7 @@ void jpc_qmfb_join_row(jpc_fix_t *a, int
- #if !defined(HAVE_VLA)
- 	/* Allocate memory for the join buffer from the heap. */
- 	if (bufsize > QMFB_JOINBUFSIZE) {
--		if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) {
-+		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
- 			/* We have no choice but to commit suicide. */
- 			abort();
- 		}
-@@ -698,7 +698,7 @@ void jpc_qmfb_join_col(jpc_fix_t *a, int
- #if !defined(HAVE_VLA)
- 	/* Allocate memory for the join buffer from the heap. */
- 	if (bufsize > QMFB_JOINBUFSIZE) {
--		if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) {
-+		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
- 			/* We have no choice but to commit suicide. */
- 			abort();
- 		}
-@@ -766,7 +766,7 @@ void jpc_qmfb_join_colgrp(jpc_fix_t *a, 
- #if !defined(HAVE_VLA)
- 	/* Allocate memory for the join buffer from the heap. */
- 	if (bufsize > QMFB_JOINBUFSIZE) {
--		if (!(buf = jas_malloc(bufsize * JPC_QMFB_COLGRPSIZE * sizeof(jpc_fix_t)))) {
-+		if (!(buf = jas_alloc2(bufsize, JPC_QMFB_COLGRPSIZE * sizeof(jpc_fix_t)))) {
- 			/* We have no choice but to commit suicide. */
- 			abort();
- 		}
-@@ -852,7 +852,7 @@ void jpc_qmfb_join_colres(jpc_fix_t *a, 
- #if !defined(HAVE_VLA)
- 	/* Allocate memory for the join buffer from the heap. */
- 	if (bufsize > QMFB_JOINBUFSIZE) {
--		if (!(buf = jas_malloc(bufsize * numcols * sizeof(jpc_fix_t)))) {
-+		if (!(buf = jas_alloc3(bufsize, numcols, sizeof(jpc_fix_t)))) {
- 			/* We have no choice but to commit suicide. */
- 			abort();
- 		}
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_t1enc.c jasper-1.900.1/src/libjasper/jpc/jpc_t1enc.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_t1enc.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_t1enc.c	2009-10-22 10:27:45.000000000 +0200
-@@ -219,7 +219,7 @@ int jpc_enc_enccblk(jpc_enc_t *enc, jas_
- 
- 	cblk->numpasses = (cblk->numbps > 0) ? (3 * cblk->numbps - 2) : 0;
- 	if (cblk->numpasses > 0) {
--		cblk->passes = jas_malloc(cblk->numpasses * sizeof(jpc_enc_pass_t));
-+		cblk->passes = jas_alloc2(cblk->numpasses, sizeof(jpc_enc_pass_t));
- 		assert(cblk->passes);
- 	} else {
- 		cblk->passes = 0;
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2cod.c jasper-1.900.1/src/libjasper/jpc/jpc_t2cod.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2cod.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_t2cod.c	2009-10-22 10:27:45.000000000 +0200
-@@ -573,7 +573,7 @@ int jpc_pchglist_insert(jpc_pchglist_t *
- 	}
- 	if (pchglist->numpchgs >= pchglist->maxpchgs) {
- 		newmaxpchgs = pchglist->maxpchgs + 128;
--		if (!(newpchgs = jas_realloc(pchglist->pchgs, newmaxpchgs * sizeof(jpc_pchg_t *)))) {
-+		if (!(newpchgs = jas_realloc2(pchglist->pchgs, newmaxpchgs, sizeof(jpc_pchg_t *)))) {
- 			return -1;
- 		}
- 		pchglist->maxpchgs = newmaxpchgs;
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2dec.c jasper-1.900.1/src/libjasper/jpc/jpc_t2dec.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2dec.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_t2dec.c	2009-10-22 10:27:45.000000000 +0200
-@@ -478,7 +478,7 @@ jpc_pi_t *jpc_dec_pi_create(jpc_dec_t *d
- 		return 0;
- 	}
- 	pi->numcomps = dec->numcomps;
--	if (!(pi->picomps = jas_malloc(pi->numcomps * sizeof(jpc_picomp_t)))) {
-+	if (!(pi->picomps = jas_alloc2(pi->numcomps, sizeof(jpc_picomp_t)))) {
- 		jpc_pi_destroy(pi);
- 		return 0;
- 	}
-@@ -490,7 +490,7 @@ jpc_pi_t *jpc_dec_pi_create(jpc_dec_t *d
- 	for (compno = 0, tcomp = tile->tcomps, picomp = pi->picomps;
- 	  compno < pi->numcomps; ++compno, ++tcomp, ++picomp) {
- 		picomp->numrlvls = tcomp->numrlvls;
--		if (!(picomp->pirlvls = jas_malloc(picomp->numrlvls *
-+		if (!(picomp->pirlvls = jas_alloc2(picomp->numrlvls,
- 		  sizeof(jpc_pirlvl_t)))) {
- 			jpc_pi_destroy(pi);
- 			return 0;
-@@ -503,7 +503,7 @@ jpc_pi_t *jpc_dec_pi_create(jpc_dec_t *d
- 		  rlvlno < picomp->numrlvls; ++rlvlno, ++pirlvl, ++rlvl) {
- /* XXX sizeof(long) should be sizeof different type */
- 			pirlvl->numprcs = rlvl->numprcs;
--			if (!(pirlvl->prclyrnos = jas_malloc(pirlvl->numprcs *
-+			if (!(pirlvl->prclyrnos = jas_alloc2(pirlvl->numprcs,
- 			  sizeof(long)))) {
- 				jpc_pi_destroy(pi);
- 				return 0;
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2enc.c jasper-1.900.1/src/libjasper/jpc/jpc_t2enc.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2enc.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_t2enc.c	2009-10-22 10:27:45.000000000 +0200
-@@ -565,7 +565,7 @@ jpc_pi_t *jpc_enc_pi_create(jpc_enc_cp_t
- 	}
- 	pi->pktno = -1;
- 	pi->numcomps = cp->numcmpts;
--	if (!(pi->picomps = jas_malloc(pi->numcomps * sizeof(jpc_picomp_t)))) {
-+	if (!(pi->picomps = jas_alloc2(pi->numcomps, sizeof(jpc_picomp_t)))) {
- 		jpc_pi_destroy(pi);
- 		return 0;
- 	}
-@@ -577,7 +577,7 @@ jpc_pi_t *jpc_enc_pi_create(jpc_enc_cp_t
- 	for (compno = 0, tcomp = tile->tcmpts, picomp = pi->picomps;
- 	  compno < pi->numcomps; ++compno, ++tcomp, ++picomp) {
- 		picomp->numrlvls = tcomp->numrlvls;
--		if (!(picomp->pirlvls = jas_malloc(picomp->numrlvls *
-+		if (!(picomp->pirlvls = jas_alloc2(picomp->numrlvls,
- 		  sizeof(jpc_pirlvl_t)))) {
- 			jpc_pi_destroy(pi);
- 			return 0;
-@@ -591,7 +591,7 @@ jpc_pi_t *jpc_enc_pi_create(jpc_enc_cp_t
- /* XXX sizeof(long) should be sizeof different type */
- 			pirlvl->numprcs = rlvl->numprcs;
- 			if (rlvl->numprcs) {
--				if (!(pirlvl->prclyrnos = jas_malloc(pirlvl->numprcs *
-+				if (!(pirlvl->prclyrnos = jas_alloc2(pirlvl->numprcs,
- 				  sizeof(long)))) {
- 					jpc_pi_destroy(pi);
- 					return 0;
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_tagtree.c jasper-1.900.1/src/libjasper/jpc/jpc_tagtree.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_tagtree.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_tagtree.c	2009-10-22 10:27:45.000000000 +0200
-@@ -125,7 +125,7 @@ jpc_tagtree_t *jpc_tagtree_create(int nu
- 		++numlvls;
- 	} while (n > 1);
- 
--	if (!(tree->nodes_ = jas_malloc(tree->numnodes_ * sizeof(jpc_tagtreenode_t)))) {
-+	if (!(tree->nodes_ = jas_alloc2(tree->numnodes_, sizeof(jpc_tagtreenode_t)))) {
- 		return 0;
- 	}
- 
-diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_util.c jasper-1.900.1/src/libjasper/jpc/jpc_util.c
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_util.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_util.c	2009-10-22 10:27:45.000000000 +0200
-@@ -109,7 +109,7 @@ int jpc_atoaf(char *s, int *numvalues, d
- 	}
- 
- 	if (n) {
--		if (!(vs = jas_malloc(n * sizeof(double)))) {
-+		if (!(vs = jas_alloc2(n, sizeof(double)))) {
- 			return -1;
- 		}
- 
-diff -pruN jasper-1.900.1.orig/src/libjasper/mif/mif_cod.c jasper-1.900.1/src/libjasper/mif/mif_cod.c
---- jasper-1.900.1.orig/src/libjasper/mif/mif_cod.c	2007-01-19 22:43:05.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/mif/mif_cod.c	2009-10-22 10:27:45.000000000 +0200
-@@ -438,8 +438,7 @@ static int mif_hdr_growcmpts(mif_hdr_t *
- 	int cmptno;
- 	mif_cmpt_t **newcmpts;
- 	assert(maxcmpts >= hdr->numcmpts);
--	newcmpts = (!hdr->cmpts) ? jas_malloc(maxcmpts * sizeof(mif_cmpt_t *)) :
--	  jas_realloc(hdr->cmpts, maxcmpts * sizeof(mif_cmpt_t *));
-+	newcmpts = jas_realloc2(hdr->cmpts, maxcmpts, sizeof(mif_cmpt_t *));
- 	if (!newcmpts) {
- 		return -1;
- 	}
diff --git a/gnu/packages/patches/jasper-CVE-2008-3522.patch b/gnu/packages/patches/jasper-CVE-2008-3522.patch
deleted file mode 100644
index 10cfec99a5..0000000000
--- a/gnu/packages/patches/jasper-CVE-2008-3522.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-Fix CVE-2008-3522 (buffer overflow in 'jas_stream_printf').
-Patch from <https://bugzilla.redhat.com/show_bug.cgi?id=CVE-2008-3522>.
-
---- jasper-1.900.1/src/libjasper/base/jas_stream.c	2008-09-08 14:56:01.000000000 +0200
-+++ jasper-1.900.1/src/libjasper/base/jas_stream.c	2008-09-08 14:58:16.000000000 +0200
-@@ -553,7 +553,7 @@ int jas_stream_printf(jas_stream_t *stre
- 	int ret;
- 
- 	va_start(ap, fmt);
--	ret = vsprintf(buf, fmt, ap);
-+	ret = vsnprintf(buf, sizeof buf, fmt, ap);
- 	jas_stream_puts(stream, buf);
- 	va_end(ap);
- 	return ret;
diff --git a/gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch b/gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch
deleted file mode 100644
index 4b5917fd28..0000000000
--- a/gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch
+++ /dev/null
@@ -1,31 +0,0 @@
-Fix CVE-2011-4516 and CVE-2011-4517 (heap buffer overflow flaws lead to
-arbitrary code execution).
-
-Copied from Fedora.
-
-http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-1.900.1-CVE-2011-4516-CVE-2011-4517-CERT-VU-887409.patch
-https://bugzilla.redhat.com/show_bug.cgi?id=747726
-
-diff -up jasper-1.900.1/src/libjasper/jpc/jpc_cs.c.CERT-VU-887409 jasper-1.900.1/src/libjasper/jpc/jpc_cs.c
---- jasper-1.900.1/src/libjasper/jpc/jpc_cs.c.CERT-VU-887409	2011-10-25 17:25:39.000000000 +0200
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_cs.c	2011-10-25 17:29:14.379371908 +0200
-@@ -744,6 +744,10 @@ static int jpc_cox_getcompparms(jpc_ms_t
- 		return -1;
- 	}
- 	compparms->numrlvls = compparms->numdlvls + 1;
-+	if (compparms->numrlvls > JPC_MAXRLVLS) {
-+		jpc_cox_destroycompparms(compparms);
-+		return -1;
-+	}
- 	if (prtflag) {
- 		for (i = 0; i < compparms->numrlvls; ++i) {
- 			if (jpc_getuint8(in, &tmp)) {
-@@ -1331,7 +1335,7 @@ static int jpc_crg_getparms(jpc_ms_t *ms
- 	jpc_crgcomp_t *comp;
- 	uint_fast16_t compno;
- 	crg->numcomps = cstate->numcomps;
--	if (!(crg->comps = jas_alloc2(cstate->numcomps, sizeof(uint_fast16_t)))) {
-+	if (!(crg->comps = jas_alloc2(cstate->numcomps, sizeof(jpc_crgcomp_t)))) {
- 		return -1;
- 	}
- 	for (compno = 0, comp = crg->comps; compno < cstate->numcomps;
diff --git a/gnu/packages/patches/jasper-CVE-2014-8137.patch b/gnu/packages/patches/jasper-CVE-2014-8137.patch
deleted file mode 100644
index c41158999f..0000000000
--- a/gnu/packages/patches/jasper-CVE-2014-8137.patch
+++ /dev/null
@@ -1,64 +0,0 @@
-Fix CVE-2014-8137 (double-free in jas_iccattrval_destroy()).
-
-Copied from Fedora.
-
-http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-CVE-2014-8137.patch
-https://bugzilla.redhat.com/show_bug.cgi?id=1173157
-
---- jasper-1.900.1.orig/src/libjasper/base/jas_icc.c	2014-12-11 14:06:44.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/base/jas_icc.c	2014-12-11 15:16:37.971272386 +0100
-@@ -1009,7 +1009,6 @@ static int jas_icccurv_input(jas_iccattr
- 	return 0;
- 
- error:
--	jas_icccurv_destroy(attrval);
- 	return -1;
- }
- 
-@@ -1127,7 +1126,6 @@ static int jas_icctxtdesc_input(jas_icca
- #endif
- 	return 0;
- error:
--	jas_icctxtdesc_destroy(attrval);
- 	return -1;
- }
- 
-@@ -1206,8 +1204,6 @@ static int jas_icctxt_input(jas_iccattrv
- 		goto error;
- 	return 0;
- error:
--	if (txt->string)
--		jas_free(txt->string);
- 	return -1;
- }
- 
-@@ -1328,7 +1324,6 @@ static int jas_icclut8_input(jas_iccattr
- 		goto error;
- 	return 0;
- error:
--	jas_icclut8_destroy(attrval);
- 	return -1;
- }
- 
-@@ -1497,7 +1492,6 @@ static int jas_icclut16_input(jas_iccatt
- 		goto error;
- 	return 0;
- error:
--	jas_icclut16_destroy(attrval);
- 	return -1;
- }
- 
---- jasper-1.900.1.orig/src/libjasper/jp2/jp2_dec.c	2014-12-11 14:30:54.193209780 +0100
-+++ jasper-1.900.1/src/libjasper/jp2/jp2_dec.c	2014-12-11 14:36:46.313217814 +0100
-@@ -291,7 +291,10 @@ jas_image_t *jp2_decode(jas_stream_t *in
- 	case JP2_COLR_ICC:
- 		iccprof = jas_iccprof_createfrombuf(dec->colr->data.colr.iccp,
- 		  dec->colr->data.colr.iccplen);
--		assert(iccprof);
-+		if (!iccprof) {
-+			jas_eprintf("error: failed to parse ICC profile\n");
-+			goto error;
-+		}
- 		jas_iccprof_gethdr(iccprof, &icchdr);
- 		jas_eprintf("ICC Profile CS %08x\n", icchdr.colorspc);
- 		jas_image_setclrspc(dec->image, fromiccpcs(icchdr.colorspc));
diff --git a/gnu/packages/patches/jasper-CVE-2014-8138.patch b/gnu/packages/patches/jasper-CVE-2014-8138.patch
deleted file mode 100644
index 0d9dc632ed..0000000000
--- a/gnu/packages/patches/jasper-CVE-2014-8138.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-Fix CVE-2014-8138 (heap overflow in jp2_decode()).
-
-Copied from Fedora.
-
-http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-CVE-2014-8138.patch
-https://bugzilla.redhat.com/show_bug.cgi?id=1173162
-
---- jasper-1.900.1.orig/src/libjasper/jp2/jp2_dec.c	2014-12-11 14:06:44.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jp2/jp2_dec.c	2014-12-11 14:06:26.000000000 +0100
-@@ -386,6 +386,11 @@ jas_image_t *jp2_decode(jas_stream_t *in
- 	/* Determine the type of each component. */
- 	if (dec->cdef) {
- 		for (i = 0; i < dec->numchans; ++i) {
-+			/* Is the channel number reasonable? */
-+			if (dec->cdef->data.cdef.ents[i].channo >= dec->numchans) {
-+				jas_eprintf("error: invalid channel number in CDEF box\n");
-+				goto error;
-+			}
- 			jas_image_setcmpttype(dec->image,
- 			  dec->chantocmptlut[dec->cdef->data.cdef.ents[i].channo],
- 			  jp2_getct(jas_image_clrspc(dec->image),
diff --git a/gnu/packages/patches/jasper-CVE-2014-8157.patch b/gnu/packages/patches/jasper-CVE-2014-8157.patch
deleted file mode 100644
index 62f4a6b32c..0000000000
--- a/gnu/packages/patches/jasper-CVE-2014-8157.patch
+++ /dev/null
@@ -1,19 +0,0 @@
-Fix CVE-2014-8157 (dec->numtiles off-by-one check in jpc_dec_process_sot()).
-
-Copied from Fedora.
-
-http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-CVE-2014-8157.patch
-https://bugzilla.redhat.com/show_bug.cgi?id=1179282
-
-diff -up jasper-1.900.1/src/libjasper/jpc/jpc_dec.c.CVE-2014-8157 jasper-1.900.1/src/libjasper/jpc/jpc_dec.c
---- jasper-1.900.1/src/libjasper/jpc/jpc_dec.c.CVE-2014-8157	2015-01-19 16:59:36.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_dec.c	2015-01-19 17:07:41.609863268 +0100
-@@ -489,7 +489,7 @@ static int jpc_dec_process_sot(jpc_dec_t
- 		dec->curtileendoff = 0;
- 	}
- 
--	if (JAS_CAST(int, sot->tileno) > dec->numtiles) {
-+	if (JAS_CAST(int, sot->tileno) >= dec->numtiles) {
- 		jas_eprintf("invalid tile number in SOT marker segment\n");
- 		return -1;
- 	}
diff --git a/gnu/packages/patches/jasper-CVE-2014-8158.patch b/gnu/packages/patches/jasper-CVE-2014-8158.patch
deleted file mode 100644
index cc54d8f53b..0000000000
--- a/gnu/packages/patches/jasper-CVE-2014-8158.patch
+++ /dev/null
@@ -1,336 +0,0 @@
-Fix CVE-2014-8158 (unrestricted stack memory use in jpc_qmfb.c).
-
-Copied from Fedora.
-
-http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-CVE-2014-8158.patch
-https://bugzilla.redhat.com/show_bug.cgi?id=1179298
-
-diff -up jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c.CVE-2014-8158 jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c
---- jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c.CVE-2014-8158	2015-01-19 17:25:28.730195502 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c	2015-01-19 17:27:20.214663127 +0100
-@@ -306,11 +306,7 @@ void jpc_qmfb_split_row(jpc_fix_t *a, in
- {
- 
- 	int bufsize = JPC_CEILDIVPOW2(numcols, 1);
--#if !defined(HAVE_VLA)
- 	jpc_fix_t splitbuf[QMFB_SPLITBUFSIZE];
--#else
--	jpc_fix_t splitbuf[bufsize];
--#endif
- 	jpc_fix_t *buf = splitbuf;
- 	register jpc_fix_t *srcptr;
- 	register jpc_fix_t *dstptr;
-@@ -318,7 +314,6 @@ void jpc_qmfb_split_row(jpc_fix_t *a, in
- 	register int m;
- 	int hstartcol;
- 
--#if !defined(HAVE_VLA)
- 	/* Get a buffer. */
- 	if (bufsize > QMFB_SPLITBUFSIZE) {
- 		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
-@@ -326,7 +321,6 @@ void jpc_qmfb_split_row(jpc_fix_t *a, in
- 			abort();
- 		}
- 	}
--#endif
- 
- 	if (numcols >= 2) {
- 		hstartcol = (numcols + 1 - parity) >> 1;
-@@ -360,12 +354,10 @@ void jpc_qmfb_split_row(jpc_fix_t *a, in
- 		}
- 	}
- 
--#if !defined(HAVE_VLA)
- 	/* If the split buffer was allocated on the heap, free this memory. */
- 	if (buf != splitbuf) {
- 		jas_free(buf);
- 	}
--#endif
- 
- }
- 
-@@ -374,11 +366,7 @@ void jpc_qmfb_split_col(jpc_fix_t *a, in
- {
- 
- 	int bufsize = JPC_CEILDIVPOW2(numrows, 1);
--#if !defined(HAVE_VLA)
- 	jpc_fix_t splitbuf[QMFB_SPLITBUFSIZE];
--#else
--	jpc_fix_t splitbuf[bufsize];
--#endif
- 	jpc_fix_t *buf = splitbuf;
- 	register jpc_fix_t *srcptr;
- 	register jpc_fix_t *dstptr;
-@@ -386,7 +374,6 @@ void jpc_qmfb_split_col(jpc_fix_t *a, in
- 	register int m;
- 	int hstartcol;
- 
--#if !defined(HAVE_VLA)
- 	/* Get a buffer. */
- 	if (bufsize > QMFB_SPLITBUFSIZE) {
- 		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
-@@ -394,7 +381,6 @@ void jpc_qmfb_split_col(jpc_fix_t *a, in
- 			abort();
- 		}
- 	}
--#endif
- 
- 	if (numrows >= 2) {
- 		hstartcol = (numrows + 1 - parity) >> 1;
-@@ -428,12 +414,10 @@ void jpc_qmfb_split_col(jpc_fix_t *a, in
- 		}
- 	}
- 
--#if !defined(HAVE_VLA)
- 	/* If the split buffer was allocated on the heap, free this memory. */
- 	if (buf != splitbuf) {
- 		jas_free(buf);
- 	}
--#endif
- 
- }
- 
-@@ -442,11 +426,7 @@ void jpc_qmfb_split_colgrp(jpc_fix_t *a,
- {
- 
- 	int bufsize = JPC_CEILDIVPOW2(numrows, 1);
--#if !defined(HAVE_VLA)
- 	jpc_fix_t splitbuf[QMFB_SPLITBUFSIZE * JPC_QMFB_COLGRPSIZE];
--#else
--	jpc_fix_t splitbuf[bufsize * JPC_QMFB_COLGRPSIZE];
--#endif
- 	jpc_fix_t *buf = splitbuf;
- 	jpc_fix_t *srcptr;
- 	jpc_fix_t *dstptr;
-@@ -457,7 +437,6 @@ void jpc_qmfb_split_colgrp(jpc_fix_t *a,
- 	int m;
- 	int hstartcol;
- 
--#if !defined(HAVE_VLA)
- 	/* Get a buffer. */
- 	if (bufsize > QMFB_SPLITBUFSIZE) {
- 		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
-@@ -465,7 +444,6 @@ void jpc_qmfb_split_colgrp(jpc_fix_t *a,
- 			abort();
- 		}
- 	}
--#endif
- 
- 	if (numrows >= 2) {
- 		hstartcol = (numrows + 1 - parity) >> 1;
-@@ -517,12 +495,10 @@ void jpc_qmfb_split_colgrp(jpc_fix_t *a,
- 		}
- 	}
- 
--#if !defined(HAVE_VLA)
- 	/* If the split buffer was allocated on the heap, free this memory. */
- 	if (buf != splitbuf) {
- 		jas_free(buf);
- 	}
--#endif
- 
- }
- 
-@@ -531,11 +507,7 @@ void jpc_qmfb_split_colres(jpc_fix_t *a,
- {
- 
- 	int bufsize = JPC_CEILDIVPOW2(numrows, 1);
--#if !defined(HAVE_VLA)
- 	jpc_fix_t splitbuf[QMFB_SPLITBUFSIZE * JPC_QMFB_COLGRPSIZE];
--#else
--	jpc_fix_t splitbuf[bufsize * numcols];
--#endif
- 	jpc_fix_t *buf = splitbuf;
- 	jpc_fix_t *srcptr;
- 	jpc_fix_t *dstptr;
-@@ -546,7 +518,6 @@ void jpc_qmfb_split_colres(jpc_fix_t *a,
- 	int m;
- 	int hstartcol;
- 
--#if !defined(HAVE_VLA)
- 	/* Get a buffer. */
- 	if (bufsize > QMFB_SPLITBUFSIZE) {
- 		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
-@@ -554,7 +525,6 @@ void jpc_qmfb_split_colres(jpc_fix_t *a,
- 			abort();
- 		}
- 	}
--#endif
- 
- 	if (numrows >= 2) {
- 		hstartcol = (numrows + 1 - parity) >> 1;
-@@ -606,12 +576,10 @@ void jpc_qmfb_split_colres(jpc_fix_t *a,
- 		}
- 	}
- 
--#if !defined(HAVE_VLA)
- 	/* If the split buffer was allocated on the heap, free this memory. */
- 	if (buf != splitbuf) {
- 		jas_free(buf);
- 	}
--#endif
- 
- }
- 
-@@ -619,18 +587,13 @@ void jpc_qmfb_join_row(jpc_fix_t *a, int
- {
- 
- 	int bufsize = JPC_CEILDIVPOW2(numcols, 1);
--#if !defined(HAVE_VLA)
- 	jpc_fix_t joinbuf[QMFB_JOINBUFSIZE];
--#else
--	jpc_fix_t joinbuf[bufsize];
--#endif
- 	jpc_fix_t *buf = joinbuf;
- 	register jpc_fix_t *srcptr;
- 	register jpc_fix_t *dstptr;
- 	register int n;
- 	int hstartcol;
- 
--#if !defined(HAVE_VLA)
- 	/* Allocate memory for the join buffer from the heap. */
- 	if (bufsize > QMFB_JOINBUFSIZE) {
- 		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
-@@ -638,7 +601,6 @@ void jpc_qmfb_join_row(jpc_fix_t *a, int
- 			abort();
- 		}
- 	}
--#endif
- 
- 	hstartcol = (numcols + 1 - parity) >> 1;
- 
-@@ -670,12 +632,10 @@ void jpc_qmfb_join_row(jpc_fix_t *a, int
- 		++srcptr;
- 	}
- 
--#if !defined(HAVE_VLA)
- 	/* If the join buffer was allocated on the heap, free this memory. */
- 	if (buf != joinbuf) {
- 		jas_free(buf);
- 	}
--#endif
- 
- }
- 
-@@ -684,18 +644,13 @@ void jpc_qmfb_join_col(jpc_fix_t *a, int
- {
- 
- 	int bufsize = JPC_CEILDIVPOW2(numrows, 1);
--#if !defined(HAVE_VLA)
- 	jpc_fix_t joinbuf[QMFB_JOINBUFSIZE];
--#else
--	jpc_fix_t joinbuf[bufsize];
--#endif
- 	jpc_fix_t *buf = joinbuf;
- 	register jpc_fix_t *srcptr;
- 	register jpc_fix_t *dstptr;
- 	register int n;
- 	int hstartcol;
- 
--#if !defined(HAVE_VLA)
- 	/* Allocate memory for the join buffer from the heap. */
- 	if (bufsize > QMFB_JOINBUFSIZE) {
- 		if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) {
-@@ -703,7 +658,6 @@ void jpc_qmfb_join_col(jpc_fix_t *a, int
- 			abort();
- 		}
- 	}
--#endif
- 
- 	hstartcol = (numrows + 1 - parity) >> 1;
- 
-@@ -735,12 +689,10 @@ void jpc_qmfb_join_col(jpc_fix_t *a, int
- 		++srcptr;
- 	}
- 
--#if !defined(HAVE_VLA)
- 	/* If the join buffer was allocated on the heap, free this memory. */
- 	if (buf != joinbuf) {
- 		jas_free(buf);
- 	}
--#endif
- 
- }
- 
-@@ -749,11 +701,7 @@ void jpc_qmfb_join_colgrp(jpc_fix_t *a,
- {
- 
- 	int bufsize = JPC_CEILDIVPOW2(numrows, 1);
--#if !defined(HAVE_VLA)
- 	jpc_fix_t joinbuf[QMFB_JOINBUFSIZE * JPC_QMFB_COLGRPSIZE];
--#else
--	jpc_fix_t joinbuf[bufsize * JPC_QMFB_COLGRPSIZE];
--#endif
- 	jpc_fix_t *buf = joinbuf;
- 	jpc_fix_t *srcptr;
- 	jpc_fix_t *dstptr;
-@@ -763,7 +711,6 @@ void jpc_qmfb_join_colgrp(jpc_fix_t *a,
- 	register int i;
- 	int hstartcol;
- 
--#if !defined(HAVE_VLA)
- 	/* Allocate memory for the join buffer from the heap. */
- 	if (bufsize > QMFB_JOINBUFSIZE) {
- 		if (!(buf = jas_alloc2(bufsize, JPC_QMFB_COLGRPSIZE * sizeof(jpc_fix_t)))) {
-@@ -771,7 +718,6 @@ void jpc_qmfb_join_colgrp(jpc_fix_t *a,
- 			abort();
- 		}
- 	}
--#endif
- 
- 	hstartcol = (numrows + 1 - parity) >> 1;
- 
-@@ -821,12 +767,10 @@ void jpc_qmfb_join_colgrp(jpc_fix_t *a,
- 		srcptr += JPC_QMFB_COLGRPSIZE;
- 	}
- 
--#if !defined(HAVE_VLA)
- 	/* If the join buffer was allocated on the heap, free this memory. */
- 	if (buf != joinbuf) {
- 		jas_free(buf);
- 	}
--#endif
- 
- }
- 
-@@ -835,11 +779,7 @@ void jpc_qmfb_join_colres(jpc_fix_t *a,
- {
- 
- 	int bufsize = JPC_CEILDIVPOW2(numrows, 1);
--#if !defined(HAVE_VLA)
- 	jpc_fix_t joinbuf[QMFB_JOINBUFSIZE * JPC_QMFB_COLGRPSIZE];
--#else
--	jpc_fix_t joinbuf[bufsize * numcols];
--#endif
- 	jpc_fix_t *buf = joinbuf;
- 	jpc_fix_t *srcptr;
- 	jpc_fix_t *dstptr;
-@@ -849,7 +789,6 @@ void jpc_qmfb_join_colres(jpc_fix_t *a,
- 	register int i;
- 	int hstartcol;
- 
--#if !defined(HAVE_VLA)
- 	/* Allocate memory for the join buffer from the heap. */
- 	if (bufsize > QMFB_JOINBUFSIZE) {
- 		if (!(buf = jas_alloc3(bufsize, numcols, sizeof(jpc_fix_t)))) {
-@@ -857,7 +796,6 @@ void jpc_qmfb_join_colres(jpc_fix_t *a,
- 			abort();
- 		}
- 	}
--#endif
- 
- 	hstartcol = (numrows + 1 - parity) >> 1;
- 
-@@ -907,12 +845,10 @@ void jpc_qmfb_join_colres(jpc_fix_t *a,
- 		srcptr += numcols;
- 	}
- 
--#if !defined(HAVE_VLA)
- 	/* If the join buffer was allocated on the heap, free this memory. */
- 	if (buf != joinbuf) {
- 		jas_free(buf);
- 	}
--#endif
- 
- }
- 
diff --git a/gnu/packages/patches/jasper-CVE-2014-9029.patch b/gnu/packages/patches/jasper-CVE-2014-9029.patch
deleted file mode 100644
index 72b4cc2dce..0000000000
--- a/gnu/packages/patches/jasper-CVE-2014-9029.patch
+++ /dev/null
@@ -1,36 +0,0 @@
-Fix CVE-2014-9029 (Heap overflows in libjasper).
-
-Copied from Fedora.
-
-http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-CVE-2014-9029.patch
-https://bugzilla.redhat.com/show_bug.cgi?id=1167537
-
---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_dec.c	2014-11-27 12:45:44.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_dec.c	2014-11-27 12:44:58.000000000 +0100
-@@ -1281,7 +1281,7 @@ static int jpc_dec_process_coc(jpc_dec_t
- 	jpc_coc_t *coc = &ms->parms.coc;
- 	jpc_dec_tile_t *tile;
- 
--	if (JAS_CAST(int, coc->compno) > dec->numcomps) {
-+	if (JAS_CAST(int, coc->compno) >= dec->numcomps) {
- 		jas_eprintf("invalid component number in COC marker segment\n");
- 		return -1;
- 	}
-@@ -1307,7 +1307,7 @@ static int jpc_dec_process_rgn(jpc_dec_t
- 	jpc_rgn_t *rgn = &ms->parms.rgn;
- 	jpc_dec_tile_t *tile;
- 
--	if (JAS_CAST(int, rgn->compno) > dec->numcomps) {
-+	if (JAS_CAST(int, rgn->compno) >= dec->numcomps) {
- 		jas_eprintf("invalid component number in RGN marker segment\n");
- 		return -1;
- 	}
-@@ -1356,7 +1356,7 @@ static int jpc_dec_process_qcc(jpc_dec_t
- 	jpc_qcc_t *qcc = &ms->parms.qcc;
- 	jpc_dec_tile_t *tile;
- 
--	if (JAS_CAST(int, qcc->compno) > dec->numcomps) {
-+	if (JAS_CAST(int, qcc->compno) >= dec->numcomps) {
- 		jas_eprintf("invalid component number in QCC marker segment\n");
- 		return -1;
- 	}
diff --git a/gnu/packages/patches/jasper-CVE-2016-1577.patch b/gnu/packages/patches/jasper-CVE-2016-1577.patch
deleted file mode 100644
index 75bbd526af..0000000000
--- a/gnu/packages/patches/jasper-CVE-2016-1577.patch
+++ /dev/null
@@ -1,19 +0,0 @@
-Description: CVE-2016-1577: Prevent double-free in jas_iccattrval_destroy()
-Origin: vendor, http://www.openwall.com/lists/oss-security/2016/03/03/12
-Bug-Ubuntu: https://launchpad.net/bugs/1547865
-Bug-Debian: https://bugs.debian.org/816625
-Forwarded: not-needed
-Author: Tyler Hicks <tyhicks@canonical.com>
-Reviewed-by: Salvatore Bonaccorso <carnil@debian.org>
-Last-Update: 2016-03-05
-
---- a/src/libjasper/base/jas_icc.c
-+++ b/src/libjasper/base/jas_icc.c
-@@ -300,6 +300,7 @@ jas_iccprof_t *jas_iccprof_load(jas_stre
- 				if (jas_iccprof_setattr(prof, tagtabent->tag, attrval))
- 					goto error;
- 				jas_iccattrval_destroy(attrval);
-+				attrval = 0;
- 			} else {
- #if 0
- 				jas_eprintf("warning: skipping unknown tag type\n");
diff --git a/gnu/packages/patches/jasper-CVE-2016-1867.patch b/gnu/packages/patches/jasper-CVE-2016-1867.patch
deleted file mode 100644
index 2d2ca6f014..0000000000
--- a/gnu/packages/patches/jasper-CVE-2016-1867.patch
+++ /dev/null
@@ -1,18 +0,0 @@
-Fix CVE-2016-1867 (Out-of-bounds read in jpc_pi_nextcprl()).
-
-Copied from SUSE.
-
-https://bugzilla.suse.com/show_bug.cgi?id=961886
-https://bugzilla.redhat.com/show_bug.cgi?id=1298135
-
---- jasper-1.900.1/src/libjasper/jpc/jpc_t2cod.c	2007-01-19 22:43:07.000000000 +0100
-+++ jasper-1.900.1/src/libjasper/jpc/jpc_t2cod.c	2016-01-14 14:22:24.569056412 +0100
-@@ -429,7 +429,7 @@
- 	}
- 
- 	for (pi->compno = pchg->compnostart, pi->picomp =
--	  &pi->picomps[pi->compno]; pi->compno < JAS_CAST(int, pchg->compnoend); ++pi->compno,
-+	  &pi->picomps[pi->compno]; pi->compno < JAS_CAST(int, pchg->compnoend) && pi->compno < pi->numcomps; ++pi->compno,
- 	  ++pi->picomp) {
- 		pirlvl = pi->picomp->pirlvls;
- 		pi->xstep = pi->picomp->hsamp * (1 << (pirlvl->prcwidthexpn +
diff --git a/gnu/packages/patches/jasper-CVE-2016-2089.patch b/gnu/packages/patches/jasper-CVE-2016-2089.patch
deleted file mode 100644
index 95d4b61111..0000000000
--- a/gnu/packages/patches/jasper-CVE-2016-2089.patch
+++ /dev/null
@@ -1,90 +0,0 @@
-Description: CVE-2016-2089: matrix rows_ NULL pointer dereference in jas_matrix_clip()
-Origin: vendor
-Bug-RedHat: https://bugzilla.redhat.com/show_bug.cgi?id=1302636
-Bug-Debian: https://bugs.debian.org/812978
-Forwarded: not-needed
-Author: Tomas Hoger <thoger@redhat.com>
-Reviewed-by: Salvatore Bonaccorso <carnil@debian.org>
-Last-Update: 2016-03-05
-
---- a/src/libjasper/base/jas_image.c
-+++ b/src/libjasper/base/jas_image.c
-@@ -426,6 +426,10 @@ int jas_image_readcmpt(jas_image_t *imag
- 		return -1;
- 	}
- 
-+	if (!data->rows_) {
-+		return -1;
-+	}
-+
- 	if (jas_matrix_numrows(data) != height || jas_matrix_numcols(data) != width) {
- 		if (jas_matrix_resize(data, height, width)) {
- 			return -1;
-@@ -479,6 +483,10 @@ int jas_image_writecmpt(jas_image_t *ima
- 		return -1;
- 	}
- 
-+	if (!data->rows_) {
-+		return -1;
-+	}
-+
- 	if (jas_matrix_numrows(data) != height || jas_matrix_numcols(data) != width) {
- 		return -1;
- 	}
---- a/src/libjasper/base/jas_seq.c
-+++ b/src/libjasper/base/jas_seq.c
-@@ -262,6 +262,10 @@ void jas_matrix_divpow2(jas_matrix_t *ma
- 	int rowstep;
- 	jas_seqent_t *data;
- 
-+	if (!matrix->rows_) {
-+		return;
-+	}
-+
- 	rowstep = jas_matrix_rowstep(matrix);
- 	for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i,
- 	  rowstart += rowstep) {
-@@ -282,6 +286,10 @@ void jas_matrix_clip(jas_matrix_t *matri
- 	jas_seqent_t *data;
- 	int rowstep;
- 
-+	if (!matrix->rows_) {
-+		return;
-+	}
-+
- 	rowstep = jas_matrix_rowstep(matrix);
- 	for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i,
- 	  rowstart += rowstep) {
-@@ -306,6 +314,10 @@ void jas_matrix_asr(jas_matrix_t *matrix
- 	int rowstep;
- 	jas_seqent_t *data;
- 
-+	if (!matrix->rows_) {
-+		return;
-+	}
-+
- 	assert(n >= 0);
- 	rowstep = jas_matrix_rowstep(matrix);
- 	for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i,
-@@ -325,6 +337,10 @@ void jas_matrix_asl(jas_matrix_t *matrix
- 	int rowstep;
- 	jas_seqent_t *data;
- 
-+	if (!matrix->rows_) {
-+		return;
-+	}
-+
- 	rowstep = jas_matrix_rowstep(matrix);
- 	for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i,
- 	  rowstart += rowstep) {
-@@ -367,6 +383,10 @@ void jas_matrix_setall(jas_matrix_t *mat
- 	int rowstep;
- 	jas_seqent_t *data;
- 
-+	if (!matrix->rows_) {
-+		return;
-+	}
-+
- 	rowstep = jas_matrix_rowstep(matrix);
- 	for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i,
- 	  rowstart += rowstep) {
diff --git a/gnu/packages/patches/jasper-CVE-2016-2116.patch b/gnu/packages/patches/jasper-CVE-2016-2116.patch
deleted file mode 100644
index cdb616fb6a..0000000000
--- a/gnu/packages/patches/jasper-CVE-2016-2116.patch
+++ /dev/null
@@ -1,19 +0,0 @@
-Description: CVE-2016-2116: Prevent jas_stream_t memory leak in jas_iccprof_createfrombuf()
-Origin: vendor, http://www.openwall.com/lists/oss-security/2016/03/03/12
-Bug-Debian: https://bugs.debian.org/816626
-Forwarded: not-needed
-Author: Tyler Hicks <tyhicks@canoonical.com>
-Reviewed-by: Salvatore Bonaccorso <carnil@debian.org>
-Last-Update: 2016-03-05
-
---- a/src/libjasper/base/jas_icc.c
-+++ b/src/libjasper/base/jas_icc.c
-@@ -1693,6 +1693,8 @@ jas_iccprof_t *jas_iccprof_createfrombuf
- 	jas_stream_close(in);
- 	return prof;
- error:
-+	if (in)
-+		jas_stream_close(in);
- 	return 0;
- }
- 
-- 
cgit v1.2.3


From 8ee04627d8f88cf446ae503c80aef6907d834636 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 18 Oct 2016 00:07:20 +0300
Subject: gnu: zimg: Update to 2.3.

* gnu/packages/image.scm (zimg): Update to 2.3.
---
 gnu/packages/image.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index ed14e83ead..4b064bb37f 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -800,7 +800,7 @@ ISO/IEC 15444-1).")
 (define-public zimg
   (package
     (name "zimg")
-    (version "2.2.1")
+    (version "2.3")
     (source
       (origin
         (method url-fetch)
@@ -809,7 +809,7 @@ ISO/IEC 15444-1).")
         (file-name (string-append name "-" version ".tar.gz"))
         (sha256
          (base32
-          "0m2gjpkb0dlg4j77nr41z284zvyfq9qg3ahsv8p1xy8jfr7h1hqa"))))
+          "1yh6kkq8596a9cxcmcxzqvwbwmxwqapwsq31xpccznw6z62j75h9"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("autoconf" ,autoconf)
@@ -827,7 +827,7 @@ of scaling, colorspace conversion, and depth conversion.  A simple API enables
 conversion between any supported formats to operate with minimal knowledge from
 the programmer.")
     (home-page "https://github.com/sekrit-twc/zimg")
-    ;; test/extra/ contains musl-libm, 
+    ;; test/extra/ contains musl-libm,
     ;; which is MIT/expat licensed, but only used for tests
     (license (license:fsf-free "file://COPYING")))) ;WTFPL version 2
 
-- 
cgit v1.2.3


From a31ac113856f392118123b233c07b95f1c65334b Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 18 Oct 2016 00:08:09 +0300
Subject: gnu: vapoursynth: Update to 34.

* gnu/packages/video.scm (vapoursynth): Update to 34.
---
 gnu/packages/video.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 3ddf8587f6..f56b1caaaf 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -1252,7 +1252,7 @@ capabilities.")
 (define-public vapoursynth
   (package
     (name "vapoursynth")
-    (version "33.1")
+    (version "34")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1261,7 +1261,7 @@ capabilities.")
               (file-name (string-append name "-" version))
               (sha256
                (base32
-                "1504jaw4yqdlyls0bz9f90rvqq7cy1jvmrnhdvwnmdfbpikqwi4c"))))
+                "0rfldphg4gy3sdfffi5yzklqz93vsj2j6nny8snjbavnf161blyi"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("autoconf" ,autoconf)
-- 
cgit v1.2.3


From 00bfd498f93570cf0ce7b6de17fb3155306b8950 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 18 Oct 2016 00:25:30 +0300
Subject: gnu: tor: Update to 0.2.8.9.

* gnu/packages/tor.scm (tor): Update to 0.2.8.9.
---
 gnu/packages/tor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/tor.scm b/gnu/packages/tor.scm
index 42d882e4bc..0812b575ce 100644
--- a/gnu/packages/tor.scm
+++ b/gnu/packages/tor.scm
@@ -40,14 +40,14 @@
 (define-public tor
   (package
     (name "tor")
-    (version "0.2.8.8")
+    (version "0.2.8.9")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://dist.torproject.org/tor-"
                                  version ".tar.gz"))
              (sha256
               (base32
-               "1pp3h0a1cl25fv04b3j6wp8aw1sfpbd2lmag397dpp2k2b305bxi"))))
+               "05jkvhbgyq81fcmk1xpl3yw97ljj5sg9pngl27zlmgl7p0xjfp1z"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("python" ,python-2)))  ; for tests
-- 
cgit v1.2.3


From 1dc30f92320c5e1b528a7eec2b0a4ce529f70c56 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 18 Oct 2016 08:57:23 +0300
Subject: gnu: enlightenment: Update to 0.21.3.

* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.3.
---
 gnu/packages/enlightenment.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/enlightenment.scm b/gnu/packages/enlightenment.scm
index e8bd387ef3..99c5b394fe 100644
--- a/gnu/packages/enlightenment.scm
+++ b/gnu/packages/enlightenment.scm
@@ -196,7 +196,7 @@ Libraries with some extra bells and whistles.")
 (define-public enlightenment
   (package
     (name "enlightenment")
-    (version "0.21.2")
+    (version "0.21.3")
     (source (origin
               (method url-fetch)
               (uri
@@ -204,7 +204,7 @@ Libraries with some extra bells and whistles.")
                               name "/" name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0fi5dxrprnvhnn2y51gnfpsjj44snriqi20k20a73vhaqxfn8xx8"))))
+                "1ljzcq775njhbcaj8vdnypf2rgc6yqqdwfkf7c22603qvv9if1dr"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--enable-mount-eeze")))
-- 
cgit v1.2.3


From 15ca49b220b531864b9ac4d3dcbb218279ca0db3 Mon Sep 17 00:00:00 2001
From: Andreas Enge <andreas@enge.fr>
Date: Tue, 18 Oct 2016 21:15:43 +0200
Subject: gnu: hdf4: Really fix non-x86 architectures.

This is a follow-up to commit 60da9fb1100787c49ed4910eacf50e83c6462dcc.

* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
---
 gnu/packages/maths.scm | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 07934e3114..d41a3f11bf 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -456,7 +456,8 @@ computations.")
                            version "/src/hdf-" version ".tar.bz2"))
        (sha256
         (base32 "16yr50j845zlfx20skmw3y75ww77akk9gg0affjqkg66ih5r03mv"))
-       (patches (search-patches "hdf4-reproducibility.patch"
+       (patches (search-patches "hdf4-architectures.patch"
+                                "hdf4-reproducibility.patch"
                                 "hdf4-shared-fortran.patch"))))
 
     (build-system gnu-build-system)
-- 
cgit v1.2.3


From 91988aee126376ea9e111882afb511e3a555936d Mon Sep 17 00:00:00 2001
From: ng0 <ng0@we.make.ritual.n0.is>
Date: Tue, 18 Oct 2016 18:15:55 +0000
Subject: gnu: torsocks: Update to 2.2.0.

* gnu/packages/patches/torsocks-dns-test.patch: Delete file.
* gnu/local.mk: Remove it.
* gnu/packages/tor.scm (torsocks): Update to 2.2.0.
[source]: Remove patch. Change method from 'git-fetch' to 'url-fetch'.
Remove 'file-name'.
[arguments]: Remove 'bootstrap' phase.
[native-inputs]: Remove autoconf, automake and libtool. Also remove
obsoleted perl-test-harness.
[home-page]: Use https URL.
(define-module): Don't import perl.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
---
 gnu/packages/patches/torsocks-dns-test.patch | 18 ------------------
 gnu/packages/tor.scm                         | 25 ++++++-------------------
 2 files changed, 6 insertions(+), 37 deletions(-)
 delete mode 100644 gnu/packages/patches/torsocks-dns-test.patch

(limited to 'gnu/packages')

diff --git a/gnu/packages/patches/torsocks-dns-test.patch b/gnu/packages/patches/torsocks-dns-test.patch
deleted file mode 100644
index ba70ba5933..0000000000
--- a/gnu/packages/patches/torsocks-dns-test.patch
+++ /dev/null
@@ -1,18 +0,0 @@
-Skip DNS tests that rely on the ability to look up arbitary
-host names.
-
---- torsocks/tests/test_dns.c	2015-11-10 18:30:53.955941984 +0100
-+++ torsocks/tests/test_dns.c	2015-11-10 18:31:02.199941892 +0100
-@@ -134,11 +134,8 @@ static void test_getaddrinfo(const struc
- int main(int argc, char **argv)
- {
- 	/* Libtap call for the number of tests planned. */
--	plan_tests(NUM_TESTS);
-+	plan_tests(1);
- 
--	test_getaddrinfo(&tor_check);
--    test_gethostbyname(&tor_dir_auth1);
--	test_gethostbyaddr(&tor_dir_auth2);
- 	test_getaddrinfo(&tor_localhost);
- 
-     return 0;
diff --git a/gnu/packages/tor.scm b/gnu/packages/tor.scm
index 0812b575ce..e6fbf6e005 100644
--- a/gnu/packages/tor.scm
+++ b/gnu/packages/tor.scm
@@ -30,7 +30,6 @@
   #:use-module (gnu packages libevent)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages pcre)
-  #:use-module (gnu packages perl)
   #:use-module (gnu packages python)
   #:use-module (gnu packages qt)
   #:use-module (gnu packages autotools)
@@ -73,28 +72,16 @@ applications based on the TCP protocol.")
 (define-public torsocks
   (package
     (name "torsocks")
-    (version "2.0.0")
+    (version "2.2.0")
     (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://git.torproject.org/torsocks.git")
-                    (commit (string-append "v" version))))
+              (method url-fetch)
+              (uri (string-append "https://people.torproject.org/~dgoulet/"
+                                  name "/" name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0an2q5ail9z414riyjbkjkm29504hy778j914baz2gn5hlv2cfak"))
-              (file-name (string-append name "-" version "-checkout"))
-              (patches (search-patches "torsocks-dns-test.patch"))))
+                "0byr9ga9w79qz4vp0m11sbmspad7fsal9wm67r4znzb7zb7cis19"))))
     (build-system gnu-build-system)
-    (arguments
-     '(#:phases (modify-phases %standard-phases
-                  (add-before 'configure 'bootstrap
-                    (lambda _
-                      (system* "autoreconf" "-vfi"))))))
-    (native-inputs `(("autoconf" ,(autoconf-wrapper))
-                     ("automake" ,automake)
-                     ("libtool" ,libtool)
-                     ("perl-test-harness" ,perl-test-harness)))
-    (home-page "http://www.torproject.org/")
+    (home-page "https://www.torproject.org/")
     (synopsis "Use socks-friendly applications with Tor")
     (description
      "Torsocks allows you to use most socks-friendly applications in a safe
-- 
cgit v1.2.3


From a56145e1fa8c8c9cb866518efdeaaf4ad4017ba1 Mon Sep 17 00:00:00 2001
From: Stephen Webber <webber.sl@gmail.com>
Date: Sun, 16 Oct 2016 15:04:35 -0500
Subject: gnu: Add kobodeluxe.

* gnu/packages/games.scm (kobodeluxe): New variable.
* gnu/packages/patches/kobodeluxe-paths.patch: New file.
* gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch: New file.
* gnu/packages/patches/kobodeluxe-const-charp-conversion.patch: New file.
* gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch: New file.
* gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch: New file.
* gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
---
 gnu/packages/games.scm                             | 33 +++++++++++
 .../kobodeluxe-const-charp-conversion.patch        | 17 ++++++
 .../patches/kobodeluxe-enemies-pipe-decl.patch     | 67 ++++++++++++++++++++++
 .../kobodeluxe-graphics-window-signed-char.patch   | 38 ++++++++++++
 .../kobodeluxe-manpage-minus-not-hyphen.patch      | 15 +++++
 .../kobodeluxe-midicon-segmentation-fault.patch    | 24 ++++++++
 gnu/packages/patches/kobodeluxe-paths.patch        | 40 +++++++++++++
 7 files changed, 234 insertions(+)
 create mode 100644 gnu/packages/patches/kobodeluxe-const-charp-conversion.patch
 create mode 100644 gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch
 create mode 100644 gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch
 create mode 100644 gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch
 create mode 100644 gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch
 create mode 100644 gnu/packages/patches/kobodeluxe-paths.patch

(limited to 'gnu/packages')

diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index 17ca12bce6..a2c8ac078a 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -23,6 +23,7 @@
 ;;; Copyright © 2016 Alex Griffin <a@ajgrf.com>
 ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2016 Steve Webber <webber.sl@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -2966,3 +2967,35 @@ symbols, the game needs graphics to render the non-euclidean world.")
                    license:public-domain ; src/direntx.*
                    license:zlib          ; src/savepng.*
                    license:gpl2+))))     ; remaining files
+
+(define-public kobodeluxe
+  (package
+    (name "kobodeluxe")
+    (version "0.5.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://olofson.net/kobodl/download/KoboDeluxe-"
+                                  version ".tar.bz2"))
+              (sha256
+               (base32
+                "0b2wvdpnmaibsy419c16dfwj5kvd3pccby2aaqvm964x74592yqg"))
+              (patches (search-patches
+                        "kobodeluxe-const-charp-conversion.patch"
+                        "kobodeluxe-enemies-pipe-decl.patch"
+                        "kobodeluxe-graphics-window-signed-char.patch"
+                        "kobodeluxe-manpage-minus-not-hyphen.patch"
+                        "kobodeluxe-midicon-segmentation-fault.patch"
+                        "kobodeluxe-paths.patch"))))
+    (build-system gnu-build-system)
+    (arguments
+     '(#:configure-flags
+       (list (string-append "CPPFLAGS=-I"
+                            (assoc-ref %build-inputs "sdl-union")
+                            "/include/SDL"))))
+    (inputs `(("sdl-union" ,(sdl-union (list sdl sdl-image)))))
+    (synopsis "Shooter with space station destruction")
+    (description
+     "Kobo Deluxe is an enhanced version of Akira Higuchi's XKobo graphical game
+for Un*x systems with X11.")
+    (home-page "http://olofson.net/kobodl/")
+    (license license:gpl2+)))
diff --git a/gnu/packages/patches/kobodeluxe-const-charp-conversion.patch b/gnu/packages/patches/kobodeluxe-const-charp-conversion.patch
new file mode 100644
index 0000000000..8386cf83fc
--- /dev/null
+++ b/gnu/packages/patches/kobodeluxe-const-charp-conversion.patch
@@ -0,0 +1,17 @@
+Description: Avoid compilation error with gcc-4.4.
+ "const char* -> char*" conversion is fatal in that version
+Origin: vendor, https://bugs.launchpad.net/ubuntu/+source/kobodeluxe/+bug/461373
+Bug-Ubuntu: https://bugs.launchpad.net/ubuntu/+source/kobodeluxe/+bug/461373
+Bug-Debian: http://bugs.debian.org/552548
+Forwarded: http://www.freelists.org/post/olofsonprojects/kobodlpatch-compile-error-in-windowcpp-with-g44
+--- a/graphics/window.cpp
++++ b/graphics/window.cpp
+@@ -398,7 +398,7 @@ void window_t::center_token_fxp(int _x,
+ 		 */
+ 		if(token)
+ 		{
+-			char *tok = strchr(txt, token);
++			const char *tok = strchr(txt, token);
+ 			if(tok)
+ 				tokpos = tok-txt;
+ 			else
diff --git a/gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch b/gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch
new file mode 100644
index 0000000000..05cd884b2b
--- /dev/null
+++ b/gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch
@@ -0,0 +1,67 @@
+# Authhor: Damyan Ivanov <dmn@debian.org>
+# Description: rename pipe2 symbol to pipe2_kbdl to avoid clashes with the one
+#              declared in system unistd.h
+# Debian-Bug: 527705
+# Upstream-Report: http://www.freelists.org/post/olofsonprojects/kobodeluxe-failing-to-build-in-Debian-enemiesh75-error-const-enemy-kind-pipe2-redeclared-as-different-kind-of-symbol
+--- a/enemies.h
++++ b/enemies.h
+@@ -72,7 +72,7 @@ extern const enemy_kind bombdeto;
+ extern const enemy_kind cannon;
+ extern const enemy_kind pipe1;
+ extern const enemy_kind core;
+-extern const enemy_kind pipe2;
++extern const enemy_kind pipe2_kbdl;
+ extern const enemy_kind rock;
+ extern const enemy_kind ring;
+ extern const enemy_kind enemy_m1;
+@@ -430,7 +430,7 @@ inline int _enemy::realize()
+
+ inline int _enemy::is_pipe()
+ {
+-	return ((_state != notuse) && ((ek == &pipe1) || (ek == &pipe2)));
++	return ((_state != notuse) && ((ek == &pipe1) || (ek == &pipe2_kbdl)));
+ }
+
+
+--- a/enemy.cpp
++++ b/enemy.cpp
+@@ -755,10 +755,10 @@ void _enemy::move_core()
+
+ void _enemy::kill_core()
+ {
+-	enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 3);
+-	enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 7);
+-	enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 1);
+-	enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 5);
++	enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 3);
++	enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 7);
++	enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 1);
++	enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 5);
+ 	enemies.make(&explosion4, CS2PIXEL(x), CS2PIXEL(y));
+ 	sound.g_base_core_explo(x, y);
+ 	release();
+@@ -978,19 +978,19 @@ void _enemy::move_pipe2()
+ 	}
+ 	p ^= a;
+ 	if(p & U_MASK)
+-		enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 1);
++		enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 1);
+ 	if(p & R_MASK)
+-		enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 3);
++		enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 3);
+ 	if(p & D_MASK)
+-		enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 5);
++		enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 5);
+ 	if(p & L_MASK)
+-		enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 7);
++		enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 7);
+ 	manage.add_score(10);
+ 	release();
+ }
+
+
+-const enemy_kind pipe2 = {
++const enemy_kind pipe2_kbdl = {
+ 	0,
+ 	&_enemy::make_pipe2,
+ 	&_enemy::move_pipe2,
diff --git a/gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch b/gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch
new file mode 100644
index 0000000000..d626618cd1
--- /dev/null
+++ b/gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch
@@ -0,0 +1,38 @@
+# This was created in responce to Debian bug #163979
+# Thing is, if you want to compant "-1" with a char value,
+# you better make that char signed
+--- kobodeluxe-0.5.1.orig/graphics/window.cpp
++++ kobodeluxe-0.5.1/graphics/window.cpp
+@@ -331,7 +331,7 @@
+ }
+
+
+-void window_t::center_token(int _x, int _y, const char *txt, char token)
++void window_t::center_token(int _x, int _y, const char *txt, signed char token)
+ {
+ 	center_token_fxp(PIXEL2CS(_x), PIXEL2CS(_y), txt, token);
+ }
+@@ -374,7 +374,7 @@
+ }
+
+
+-void window_t::center_token_fxp(int _x, int _y, const char *txt, char token)
++void window_t::center_token_fxp(int _x, int _y, const char *txt, signed char token)
+ {
+ 	_x = CS2PIXEL((_x * xs + 128) >> 8);
+ 	_y = CS2PIXEL((_y * ys + 128) >> 8);
+--- kobodeluxe-0.5.1.orig/graphics/window.h
++++ kobodeluxe-0.5.1/graphics/window.h
+@@ -265,10 +265,10 @@
+ 	void font(int fnt);
+ 	void string(int _x, int _y, const char *txt);
+ 	void center(int _y, const char *txt);
+-	void center_token(int _x, int _y, const char *txt, char token = 0);
++	void center_token(int _x, int _y, const char *txt, signed char token = 0);
+ 	void string_fxp(int _x, int _y, const char *txt);
+ 	void center_fxp(int _y, const char *txt);
+-	void center_token_fxp(int _x, int _y, const char *txt, char token = 0);
++	void center_token_fxp(int _x, int _y, const char *txt, signed char token = 0);
+ 	int textwidth(const char *txt, int min = 0, int max = 255);
+ 	int textwidth_fxp(const char *txt, int min = 0, int max = 255);
+ 	int fontheight();
diff --git a/gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch b/gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch
new file mode 100644
index 0000000000..34cab90ec3
--- /dev/null
+++ b/gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch
@@ -0,0 +1,15 @@
+# Author: Damyan Ivanov <dmn@debian.org>
+# Description: convert a hyphen in kobodl manpage to a minus, which is what is
+#              inttented here
+# Upstream-Report: http://www.freelists.org/post/olofsonprojects/patch-manpage-uses-hyphen-instead-of-a-minus-sign
+--- a/kobodl.6
++++ b/kobodl.6
+@@ -176,7 +176,7 @@ Video Mode. Default: 17200.
+ Enable Vertical Sync. Default: On.
+ .TP
+ .B \-videopages
+-Number of Video Pages. Default: -1.
++Number of Video Pages. Default: \-1.
+ .TP
+ .B \-scalemode
+ Scaling Filter Mode. Default: 1.
diff --git a/gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch b/gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch
new file mode 100644
index 0000000000..3348348ced
--- /dev/null
+++ b/gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch
@@ -0,0 +1,24 @@
+From: Emile CARRY <emile.carry@sequanux.org>
+Date: Wed, 6 Apr 2016 00:27:17 +0200
+Subject: midicon segmentation fault
+
+Debian-Bug: https://bugs.debian.org/819897
+Forwarded: no
+---
+ sound/a_midicon.c | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/sound/a_midicon.c b/sound/a_midicon.c
+index 57de3cf..ded2988 100644
+--- a/sound/a_midicon.c
++++ b/sound/a_midicon.c
+@@ -120,8 +120,8 @@ static inline void __press(unsigned ch, unsigned key)
+ {
+ 	m[ch].next[key] = -1;
+ 	m[ch].prev[key] = m[ch].last;
+-	m[ch].next[m[ch].last] = (char)key;
+ 	m[ch].last = (char)key;
++	m[ch].next[m[ch].last] = (char)key;
+ }
+
+
diff --git a/gnu/packages/patches/kobodeluxe-paths.patch b/gnu/packages/patches/kobodeluxe-paths.patch
new file mode 100644
index 0000000000..87c7b3a620
--- /dev/null
+++ b/gnu/packages/patches/kobodeluxe-paths.patch
@@ -0,0 +1,40 @@
+# Disable reading of configs, graphics, and data from the current directory.
+# So it's safe to run kobodeluxe from anywhere w/o worry about an attacker
+# feeding it bad data.
+--- kobodeluxe-0.5.1.orig/kobo.cpp
++++ kobodeluxe-0.5.1/kobo.cpp
+@@ -141,21 +141,21 @@
+ 	 * Graphics data
+ 	 */
+ 	/* Current dir; from within the build tree */
+-	fmap->addpath("GFX", "./data/gfx");
++	//fmap->addpath("GFX", "./data/gfx");
+ 	/* Real data dir */
+ 	fmap->addpath("GFX", "DATA>>gfx");
+ 	/* Current dir */
+-	fmap->addpath("GFX", "./gfx");
++	//fmap->addpath("GFX", "./gfx");
+
+ 	/*
+ 	 * Sound data
+ 	 */
+ 	/* Current dir; from within the build tree */
+-	fmap->addpath("SFX", "./data/sfx");
++	//fmap->addpath("SFX", "./data/sfx");
+ 	/* Real data dir */
+ 	fmap->addpath("SFX", "DATA>>sfx");
+ 	/* Current dir */
+-	fmap->addpath("SFX", "./sfx");
++	//fmap->addpath("SFX", "./sfx");
+
+ 	/*
+ 	 * Score files (user and global)
+@@ -173,7 +173,7 @@
+ 	/* System local */
+ 	fmap->addpath("CONFIG", SYSCONF_DIR);
+ 	/* In current dir (last resort) */
+-	fmap->addpath("CONFIG", "./");
++	//fmap->addpath("CONFIG", "./");
+ }
+
+
-- 
cgit v1.2.3


From 0cf3a7259b1857f892fc09f9d3654f92d13a0a76 Mon Sep 17 00:00:00 2001
From: Leo Famulari <leo@famulari.name>
Date: Tue, 18 Oct 2016 20:40:54 -0400
Subject: gnu: mysql: Update to 5.7.16.

* gnu/packages/databases.scm (mysql): Update to 5.7.16.
---
 gnu/packages/databases.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 902b3f32fa..673cad954b 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -210,7 +210,7 @@ SQL, Key/Value, XML/XQuery or Java Object storage for their data model.")
 (define-public mysql
   (package
     (name "mysql")
-    (version "5.7.15")
+    (version "5.7.16")
     (source (origin
              (method url-fetch)
              (uri (list (string-append
@@ -222,7 +222,7 @@ SQL, Key/Value, XML/XQuery or Java Object storage for their data model.")
                           name "-" version ".tar.gz")))
              (sha256
               (base32
-               "0mlrxcvkn6bf869hjw9fb6m24ak26ndffnd91b4mknmz8cqkb1ch"))))
+               "198qhd9bdm0fnpp307mgby2aar92yzya0937kxi7bcpdfjcvada9"))))
     (build-system cmake-build-system)
     (arguments
      `(#:configure-flags
-- 
cgit v1.2.3


From ca121ae8d7db7e6075a97c236c07be20f6d8811a Mon Sep 17 00:00:00 2001
From: Leo Famulari <leo@famulari.name>
Date: Tue, 18 Oct 2016 20:41:17 -0400
Subject: gnu: mariadb: Update to 10.1.18.

* gnu/packages/databases.scm (mariadb): Update to 10.1.18.
---
 gnu/packages/databases.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 673cad954b..9f9ea0169a 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -285,7 +285,7 @@ Language.")
 (define-public mariadb
   (package
     (name "mariadb")
-    (version "10.1.17")
+    (version "10.1.18")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://downloads.mariadb.org/f/"
@@ -293,7 +293,7 @@ Language.")
                                   name "-" version ".tar.gz"))
               (sha256
                (base32
-                "1ddalhxxcn95qp5b50z213niylcd0s6bqphid0c7c624wg2mm92c"))))
+                "0wrvhyck95czhz553834i9im7ljvn8k2byakcinlji7zx43njcyp"))))
     (build-system cmake-build-system)
     (arguments
      '(#:configure-flags
-- 
cgit v1.2.3


From 3d1fe340db4f9d0d64d502fe2d2dbabf4ec811dd Mon Sep 17 00:00:00 2001
From: Christopher Allan Webber <cwebber@dustycloud.org>
Date: Tue, 18 Oct 2016 20:33:47 -0500
Subject: gnu: kobodeluxe: Indicate origin of kobodeluxe-paths.patch.

* gnu/packages/patches/kobodeluxe-paths.patch: Update header, pointing
  to Debian tarball for provenance.
---
 gnu/packages/patches/kobodeluxe-paths.patch | 3 +++
 1 file changed, 3 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/patches/kobodeluxe-paths.patch b/gnu/packages/patches/kobodeluxe-paths.patch
index 87c7b3a620..ac8ee67906 100644
--- a/gnu/packages/patches/kobodeluxe-paths.patch
+++ b/gnu/packages/patches/kobodeluxe-paths.patch
@@ -1,3 +1,6 @@
+# Patch snarfed from
+# http://http.debian.net/debian/pool/main/k/kobodeluxe/kobodeluxe_0.5.1-8.debian.tar.xz
+#
 # Disable reading of configs, graphics, and data from the current directory.
 # So it's safe to run kobodeluxe from anywhere w/o worry about an attacker
 # feeding it bad data.
-- 
cgit v1.2.3


From 4b86dde0d6c7fd259d5a676114813bcbcaa9324b Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Mon, 17 Oct 2016 08:52:48 +0200
Subject: gnu: chez-scheme: Add search-path.

* gnu/packages/scheme.scm (chez-scheme)[native-search-paths]: New field.
---
 gnu/packages/scheme.scm | 4 ++++
 1 file changed, 4 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/scheme.scm b/gnu/packages/scheme.scm
index 9597473ad4..c461efb373 100644
--- a/gnu/packages/scheme.scm
+++ b/gnu/packages/scheme.scm
@@ -635,6 +635,10 @@ threads.")
      `(("texlive" ,texlive)
        ("ghostscript" ,ghostscript-gs)
        ("netpbm" ,netpbm)))
+    (native-search-paths
+     (list (search-path-specification
+            (variable "CHEZSCHEMELIBDIRS")
+            (files (list (string-append "lib/csv" version "-site"))))))
     (outputs '("out" "doc"))
     (arguments
      `(#:modules ((guix build gnu-build-system)
-- 
cgit v1.2.3


From f7616df4afc1b1c81d722d3beae2ca6830065f6f Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Mon, 17 Oct 2016 09:01:11 +0200
Subject: gnu: chez-scheme: Fix i686 build.

* gnu/packages/scheme.scm (chez-scheme): Add 'configure-flags', generalize
  'configure' phase and simplify 'install-doc' phase.
---
 gnu/packages/scheme.scm | 21 ++++++++++++---------
 1 file changed, 12 insertions(+), 9 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/scheme.scm b/gnu/packages/scheme.scm
index c461efb373..10368b2d15 100644
--- a/gnu/packages/scheme.scm
+++ b/gnu/packages/scheme.scm
@@ -645,6 +645,14 @@ threads.")
                   (guix build utils)
                   (ice-9 match))
        #:test-target "test"
+       #:configure-flags
+       (list ,(match (or (%current-target-system) (%current-system))
+                ("x86_64-linux" '(list "--machine=ta6le"))
+                ("i686-linux" '(list "--machine=ti3le"))
+                ;; FIXME: Some people succeeded in cross-compiling to
+                ;; ARM. https://github.com/cisco/ChezScheme/issues/13
+                (_
+                 '())))
        #:phases
        (modify-phases %standard-phases
          ;; Adapt the custom 'configure' script.
@@ -673,12 +681,9 @@ threads.")
                (substitute* (find-files "./c" "Mf-[a-zA-Z0-9.]+")
                  (("\\$\\{Kernel\\}: \\$\\{kernelobj\\} \\.\\./zlib/libz\\.a")
                   "${Kernel}: ${kernelobj}")
-                 (("ld -melf_x86_64 -r -X -o \\$\\{Kernel\\} \\$\\{kernelobj\\} \\.\\./zlib/libz\\.a")
-                  (string-append "ld -melf_x86_64 -r -X -o ${Kernel} ${kernelobj} "
-                                 zlib "/lib/libz.a"))
-                 (("\\(cd \\.\\./zlib; CFLAGS=-m64 \\./configure --64)")
-                  (which "true"))
-                 (("(cd \\.\\./zlib; make)")
+                 (("ld ([-a-zA-Z0-9_${} ]+) \\.\\./zlib/libz\\.a" all args)
+                  (string-append "ld " args " " zlib "/lib/libz.a"))
+                 (("\\(cd \\.\\./zlib; ([-a-zA-Z0-9=./ ]+))")
                   (which "true")))
                (substitute* (find-files "mats" "Mf-.*")
                  (("^[[:space:]]+(cc ) *") "\tgcc "))
@@ -715,9 +720,7 @@ threads.")
                (system* "make" "docs")
                (with-directory-excursion "csug"
                  (substitute* "Makefile"
-                   (("/tmp/csug9") doc)
-                   (("^m = a6le")
-                    "m := $(shell echo '(machine-type)' | scheme -q)"))
+                   (("/tmp/csug9") doc))
                  (system* "make" "install")
                  (install-file "csug.pdf" doc))
                (with-directory-excursion "release_notes"
-- 
cgit v1.2.3


From 13bbc0cc94902a9f442d8c594f3970afcf90bda5 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Mon, 17 Oct 2016 09:05:39 +0200
Subject: gnu: chez-scheme: Move to new module.

* gnu/packages/scheme.scm (chez-scheme, nanopass, stex): Move variables ...
* gnu/packages/chez.scm (chez-scheme, nanopass, stex): ... here. New module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
---
 gnu/packages/chez.scm   | 196 ++++++++++++++++++++++++++++++++++++++++++++++++
 gnu/packages/scheme.scm | 161 ---------------------------------------
 2 files changed, 196 insertions(+), 161 deletions(-)
 create mode 100644 gnu/packages/chez.scm

(limited to 'gnu/packages')

diff --git a/gnu/packages/chez.scm b/gnu/packages/chez.scm
new file mode 100644
index 0000000000..6b694b8ef1
--- /dev/null
+++ b/gnu/packages/chez.scm
@@ -0,0 +1,196 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2016 Federico Beffa <beffa@fbengineering.ch>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages chez)
+  #:use-module (gnu packages)
+  #:use-module ((guix licenses)
+                #:select (gpl2+ lgpl2.0+ lgpl2.1+ asl2.0 bsd-3 expat))
+  #:use-module (guix packages)
+  #:use-module (guix download)
+  #:use-module (guix utils)
+  #:use-module (guix build-system gnu)
+  #:use-module (gnu packages compression)
+  #:use-module (gnu packages ncurses)
+  #:use-module (gnu packages ghostscript)
+  #:use-module (gnu packages netpbm)
+  #:use-module (gnu packages tex)
+  #:use-module (gnu packages compression)
+  #:use-module (gnu packages image)
+  #:use-module (gnu packages xorg)
+  #:use-module (ice-9 match))
+
+(define nanopass
+  (let ((version "1.9"))
+    (origin
+      (method url-fetch)
+      (uri (string-append
+            "https://github.com/nanopass/nanopass-framework-scheme/archive"
+            "/v" version ".tar.gz"))
+      (sha256 (base32 "11pwyy4jiwhcl2am3a4ciczacjbjkyvdizqzdglb3l1hj2gj6nv2"))
+      (file-name (string-append "nanopass-" version ".tar.gz")))))
+
+(define stex
+  (let ((version "1.2.1"))
+    (origin
+      (method url-fetch)
+      (uri (string-append
+            "https://github.com/dybvig/stex/archive"
+            "/v" version ".tar.gz"))
+      (sha256 (base32 "03pl3f668h24dn51vccr1sj5lsba9zq3j37bnxjvdadcdaj4qy5z"))
+      (file-name (string-append "stex-" version ".tar.gz")))))
+
+(define-public chez-scheme
+  (package
+    (name "chez-scheme")
+    (version "9.4")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/cisco/ChezScheme/archive/"
+                           "v" version ".tar.gz"))
+       (sha256
+        (base32 "0lprmpsjg2plc6ykgkz482zyvhkzv6gd0vnar71ph21h6zknyklz"))
+       (file-name (string-append "chez-scheme-" version ".tar.gz"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("ncurses" ,ncurses)
+       ("libx11" ,libx11)
+       ("xorg-rgb" ,xorg-rgb)
+       ("nanopass" ,nanopass)
+       ("zlib" ,zlib)
+       ("stex" ,stex)))
+    (native-inputs
+     `(("texlive" ,texlive)
+       ("ghostscript" ,ghostscript-gs)
+       ("netpbm" ,netpbm)))
+    (native-search-paths
+     (list (search-path-specification
+            (variable "CHEZSCHEMELIBDIRS")
+            (files (list (string-append "lib/csv" version "-site"))))))
+    (outputs '("out" "doc"))
+    (arguments
+     `(#:modules ((guix build gnu-build-system)
+                  (guix build utils)
+                  (ice-9 match))
+       #:test-target "test"
+       #:configure-flags
+       (list ,(match (or (%current-target-system) (%current-system))
+                ("x86_64-linux" '(list "--machine=ta6le"))
+                ("i686-linux" '(list "--machine=ti3le"))
+                ;; FIXME: Some people succeeded in cross-compiling to
+                ;; ARM. https://github.com/cisco/ChezScheme/issues/13
+                (_
+                 '())))
+       #:phases
+       (modify-phases %standard-phases
+         ;; Adapt the custom 'configure' script.
+         (replace 'configure
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out"))
+                   (nanopass (assoc-ref inputs "nanopass"))
+                   (stex (assoc-ref inputs "stex"))
+                   (zlib (assoc-ref inputs "zlib"))
+                   (unpack (assoc-ref %standard-phases 'unpack))
+                   (patch-source-shebangs
+                    (assoc-ref %standard-phases 'patch-source-shebangs)))
+               (map (match-lambda
+                      ((src orig-name new-name)
+                       (with-directory-excursion "."
+                         (apply unpack (list #:source src))
+                         (apply patch-source-shebangs (list #:source src)))
+                       (delete-file-recursively new-name)
+                       (system* "mv" orig-name new-name)))
+                    `((,nanopass "nanopass-framework-scheme-1.9" "nanopass")
+                      (,stex "stex-1.2.1" "stex")))
+               ;; The Makefile wants to download and compile "zlib".  We patch
+               ;; it to use the one from our 'zlib' package.
+               (substitute* "configure"
+                 (("rmdir zlib .*$") "echo \"using system zlib\"\n"))
+               (substitute* (find-files "./c" "Mf-[a-zA-Z0-9.]+")
+                 (("\\$\\{Kernel\\}: \\$\\{kernelobj\\} \\.\\./zlib/libz\\.a")
+                  "${Kernel}: ${kernelobj}")
+                 (("ld ([-a-zA-Z0-9_${} ]+) \\.\\./zlib/libz\\.a" all args)
+                  (string-append "ld " args " " zlib "/lib/libz.a"))
+                 (("\\(cd \\.\\./zlib; ([-a-zA-Z0-9=./ ]+))")
+                  (which "true")))
+               (substitute* (find-files "mats" "Mf-.*")
+                 (("^[[:space:]]+(cc ) *") "\tgcc "))
+               (substitute*
+                   (find-files "." (string-append
+                                    "("
+                                    "Mf-[a-zA-Z0-9.]+"
+                                    "|Makefile[a-zA-Z0-9.]*"
+                                    "|checkin"
+                                    "|stex\\.stex"
+                                    "|newrelease"
+                                    "|workarea"
+                                    ;;"|[a-zA-Z0-9.]+\\.ms" ; guile can't read
+                                    ")"))
+                 (("/bin/rm") (which "rm"))
+                 (("/bin/ln") (which "ln"))
+                 (("/bin/cp") (which "cp")))
+               (substitute* "makefiles/installsh"
+                 (("/bin/true") (which "true")))
+               (substitute* "stex/Makefile"
+                 (("PREFIX=/usr") (string-append "PREFIX=" out)))
+               (zero? (system* "./configure" "--threads"
+                               (string-append "--installprefix=" out))))))
+         ;; Installation of the documentation requires a running "chez".
+         (add-after 'install 'install-doc
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((bin (string-append (assoc-ref outputs "out") "/bin"))
+                   (doc (string-append (assoc-ref outputs "doc")
+                                       "/share/doc/" ,name "-" ,version)))
+               (setenv "HOME" (getcwd))
+               (setenv "PATH" (string-append (getenv "PATH") ":" bin))
+               (with-directory-excursion "stex"
+                 (system* "make" (string-append "BIN=" bin)))
+               (system* "make" "docs")
+               (with-directory-excursion "csug"
+                 (substitute* "Makefile"
+                   (("/tmp/csug9") doc))
+                 (system* "make" "install")
+                 (install-file "csug.pdf" doc))
+               (with-directory-excursion "release_notes"
+                 (install-file "release_notes.pdf" doc))
+               #t)))
+         ;; The binary file name is called "scheme" as the one from MIT/GNU
+         ;; Scheme.  We add a symlink to use in case both are installed.
+         (add-after 'install 'install-symlink
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (bin (string-append out "/bin"))
+                    (lib (string-append out "/lib"))
+                    (name "chez-scheme"))
+               (symlink (string-append bin "/scheme")
+                        (string-append bin "/" name))
+               (map (lambda (file)
+                      (symlink file (string-append (dirname file)
+                                                   "/" name ".boot")))
+                    (find-files lib "scheme.boot"))
+               #t))))))
+    ;; According to the documentation MIPS is not supported.
+    (supported-systems (delete "mips64el-linux" %supported-systems))
+    (home-page "http://www.scheme.com")
+    (synopsis "R6RS Scheme compiler and run-time")
+    (description
+     "Chez Scheme is a compiler and run-time system for the language of the
+Revised^6 Report on Scheme (R6RS), with numerous extensions.  The compiler
+generates native code for each target processor, with support for x86, x86_64,
+and 32-bit PowerPC architectures.")
+    (license asl2.0)))
diff --git a/gnu/packages/scheme.scm b/gnu/packages/scheme.scm
index 10368b2d15..41a7bf5328 100644
--- a/gnu/packages/scheme.scm
+++ b/gnu/packages/scheme.scm
@@ -591,167 +591,6 @@ an isolated heap allowing multiple VMs to run simultaneously in different OS
 threads.")
     (license bsd-3)))
 
-(define nanopass
-  (let ((version "1.9"))
-    (origin
-      (method url-fetch)
-      (uri (string-append
-            "https://github.com/nanopass/nanopass-framework-scheme/archive"
-            "/v" version ".tar.gz"))
-      (sha256 (base32 "11pwyy4jiwhcl2am3a4ciczacjbjkyvdizqzdglb3l1hj2gj6nv2"))
-      (file-name (string-append "nanopass-" version ".tar.gz")))))
-
-(define stex
-  (let ((version "1.2.1"))
-    (origin
-      (method url-fetch)
-      (uri (string-append
-            "https://github.com/dybvig/stex/archive"
-            "/v" version ".tar.gz"))
-      (sha256 (base32 "03pl3f668h24dn51vccr1sj5lsba9zq3j37bnxjvdadcdaj4qy5z"))
-      (file-name (string-append "stex-" version ".tar.gz")))))
-
-(define-public chez-scheme
-  (package
-    (name "chez-scheme")
-    (version "9.4")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://github.com/cisco/ChezScheme/archive/"
-                           "v" version ".tar.gz"))
-       (sha256
-        (base32 "0lprmpsjg2plc6ykgkz482zyvhkzv6gd0vnar71ph21h6zknyklz"))
-       (file-name (string-append "chez-scheme-" version ".tar.gz"))))
-    (build-system gnu-build-system)
-    (inputs
-     `(("ncurses" ,ncurses)
-       ("libx11" ,libx11)
-       ("xorg-rgb" ,xorg-rgb)
-       ("nanopass" ,nanopass)
-       ("zlib" ,zlib)
-       ("stex" ,stex)))
-    (native-inputs
-     `(("texlive" ,texlive)
-       ("ghostscript" ,ghostscript-gs)
-       ("netpbm" ,netpbm)))
-    (native-search-paths
-     (list (search-path-specification
-            (variable "CHEZSCHEMELIBDIRS")
-            (files (list (string-append "lib/csv" version "-site"))))))
-    (outputs '("out" "doc"))
-    (arguments
-     `(#:modules ((guix build gnu-build-system)
-                  (guix build utils)
-                  (ice-9 match))
-       #:test-target "test"
-       #:configure-flags
-       (list ,(match (or (%current-target-system) (%current-system))
-                ("x86_64-linux" '(list "--machine=ta6le"))
-                ("i686-linux" '(list "--machine=ti3le"))
-                ;; FIXME: Some people succeeded in cross-compiling to
-                ;; ARM. https://github.com/cisco/ChezScheme/issues/13
-                (_
-                 '())))
-       #:phases
-       (modify-phases %standard-phases
-         ;; Adapt the custom 'configure' script.
-         (replace 'configure
-           (lambda* (#:key inputs outputs #:allow-other-keys)
-             (let ((out (assoc-ref outputs "out"))
-                   (nanopass (assoc-ref inputs "nanopass"))
-                   (stex (assoc-ref inputs "stex"))
-                   (zlib (assoc-ref inputs "zlib"))
-                   (unpack (assoc-ref %standard-phases 'unpack))
-                   (patch-source-shebangs
-                    (assoc-ref %standard-phases 'patch-source-shebangs)))
-               (map (match-lambda
-                      ((src orig-name new-name)
-                       (with-directory-excursion "."
-                         (apply unpack (list #:source src))
-                         (apply patch-source-shebangs (list #:source src)))
-                       (delete-file-recursively new-name)
-                       (system* "mv" orig-name new-name)))
-                    `((,nanopass "nanopass-framework-scheme-1.9" "nanopass")
-                      (,stex "stex-1.2.1" "stex")))
-               ;; The Makefile wants to download and compile "zlib".  We patch
-               ;; it to use the one from our 'zlib' package.
-               (substitute* "configure"
-                 (("rmdir zlib .*$") "echo \"using system zlib\"\n"))
-               (substitute* (find-files "./c" "Mf-[a-zA-Z0-9.]+")
-                 (("\\$\\{Kernel\\}: \\$\\{kernelobj\\} \\.\\./zlib/libz\\.a")
-                  "${Kernel}: ${kernelobj}")
-                 (("ld ([-a-zA-Z0-9_${} ]+) \\.\\./zlib/libz\\.a" all args)
-                  (string-append "ld " args " " zlib "/lib/libz.a"))
-                 (("\\(cd \\.\\./zlib; ([-a-zA-Z0-9=./ ]+))")
-                  (which "true")))
-               (substitute* (find-files "mats" "Mf-.*")
-                 (("^[[:space:]]+(cc ) *") "\tgcc "))
-               (substitute*
-                   (find-files "." (string-append
-                                    "("
-                                    "Mf-[a-zA-Z0-9.]+"
-                                    "|Makefile[a-zA-Z0-9.]*"
-                                    "|checkin"
-                                    "|stex\\.stex"
-                                    "|newrelease"
-                                    "|workarea"
-                                    ;;"|[a-zA-Z0-9.]+\\.ms" ; guile can't read
-                                    ")"))
-                 (("/bin/rm") (which "rm"))
-                 (("/bin/ln") (which "ln"))
-                 (("/bin/cp") (which "cp")))
-               (substitute* "makefiles/installsh"
-                 (("/bin/true") (which "true")))
-               (substitute* "stex/Makefile"
-                 (("PREFIX=/usr") (string-append "PREFIX=" out)))
-               (zero? (system* "./configure" "--threads"
-                               (string-append "--installprefix=" out))))))
-         ;; Installation of the documentation requires a running "chez".
-         (add-after 'install 'install-doc
-           (lambda* (#:key inputs outputs #:allow-other-keys)
-             (let ((bin (string-append (assoc-ref outputs "out") "/bin"))
-                   (doc (string-append (assoc-ref outputs "doc")
-                                       "/share/doc/" ,name "-" ,version)))
-               (setenv "HOME" (getcwd))
-               (setenv "PATH" (string-append (getenv "PATH") ":" bin))
-               (with-directory-excursion "stex"
-                 (system* "make" (string-append "BIN=" bin)))
-               (system* "make" "docs")
-               (with-directory-excursion "csug"
-                 (substitute* "Makefile"
-                   (("/tmp/csug9") doc))
-                 (system* "make" "install")
-                 (install-file "csug.pdf" doc))
-               (with-directory-excursion "release_notes"
-                 (install-file "release_notes.pdf" doc))
-               #t)))
-         ;; The binary file name is called "scheme" as the one from MIT/GNU
-         ;; Scheme.  We add a symlink to use in case both are installed.
-         (add-after 'install 'install-symlink
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (bin (string-append out "/bin"))
-                    (lib (string-append out "/lib"))
-                    (name "chez-scheme"))
-               (symlink (string-append bin "/scheme")
-                        (string-append bin "/" name))
-               (map (lambda (file)
-                      (symlink file (string-append (dirname file)
-                                                   "/" name ".boot")))
-                    (find-files lib "scheme.boot"))
-               #t))))))
-    ;; According to the documentation MIPS and ARM are not supported.
-    (supported-systems '("x86_64-linux" "i686-linux"))
-    (home-page "http://www.scheme.com")
-    (synopsis "R6RS Scheme compiler and run-time")
-    (description
-     "Chez Scheme is a compiler and run-time system for the language of the
-Revised^6 Report on Scheme (R6RS), with numerous extensions.  The compiler
-generates native code for each target processor, with support for x86, x86_64,
-and 32-bit PowerPC architectures.")
-    (license asl2.0)))
-
 (define-public scmutils
   (let ()
     (define (system-suffix)
-- 
cgit v1.2.3


From c344b85dd089db106bbd76fe756f1138662f9753 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 15:49:36 +0200
Subject: gnu: Add chez-srfi.

* gnu/packages/chez.scm (chez-srfi): New variable.
---
 gnu/packages/chez.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/chez.scm b/gnu/packages/chez.scm
index 6b694b8ef1..8d562d7d61 100644
--- a/gnu/packages/chez.scm
+++ b/gnu/packages/chez.scm
@@ -194,3 +194,31 @@ Revised^6 Report on Scheme (R6RS), with numerous extensions.  The compiler
 generates native code for each target processor, with support for x86, x86_64,
 and 32-bit PowerPC architectures.")
     (license asl2.0)))
+
+(define-public chez-srfi
+  (package
+    (name "chez-srfi")
+    (version "1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://github.com/fedeinthemix/chez-srfi/archive"
+             "/v" version ".tar.gz"))
+       (sha256
+        (base32 "17i4wly7bcr5kb5hf04ljpbvv4r5hsr9xsmw650fj43z9jr303gs"))
+       (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("chez-scheme" ,chez-scheme)))
+    (arguments
+     `(#:make-flags (let ((out (assoc-ref %outputs "out")))
+                      (list (string-append "PREFIX=" out)))
+       #:test-target "test"
+       #:phases (modify-phases %standard-phases
+                  (delete 'configure))))
+    (home-page "https://github.com/fedeinthemix/chez-srfi")
+    (synopsis "SRFI libraries for Chez Scheme")
+    (description
+     "This package provides a collection of SRFI libraries for Chez Scheme.")
+    (license expat)))
-- 
cgit v1.2.3


From 4dfe4eee55b70d4ec1bf79dcd1aa441250086498 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 15:59:49 +0200
Subject: gnu: Add chez-web

* gnu/packages/chez.scm (chez-web): New variable.
---
 gnu/packages/chez.scm | 53 ++++++++++++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 52 insertions(+), 1 deletion(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/chez.scm b/gnu/packages/chez.scm
index 8d562d7d61..bfcf1b0467 100644
--- a/gnu/packages/chez.scm
+++ b/gnu/packages/chez.scm
@@ -19,9 +19,11 @@
 (define-module (gnu packages chez)
   #:use-module (gnu packages)
   #:use-module ((guix licenses)
-                #:select (gpl2+ lgpl2.0+ lgpl2.1+ asl2.0 bsd-3 expat))
+                #:select (gpl2+ lgpl2.0+ lgpl2.1+ asl2.0 bsd-3 expat
+                          public-domain))
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module (guix utils)
   #:use-module (guix build-system gnu)
   #:use-module (gnu packages compression)
@@ -222,3 +224,52 @@ and 32-bit PowerPC architectures.")
     (description
      "This package provides a collection of SRFI libraries for Chez Scheme.")
     (license expat)))
+
+(define-public chez-web
+  (let ((commit "5fd177fe53f31f466bf88720d03c95a3711a8bea")
+        (revision "1"))
+    (package
+      (name "chez-web")
+      ;; release 2.0 is different and doesn't work.
+      (version (string-append "2.0-" revision "."
+                              (string-take commit 7)))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/arcfide/ChezWEB.git")
+               (commit commit)))
+         (file-name (string-append name "-" version "-checkout"))
+         (sha256
+          (base32 "1dq25qygyncbfq4kwwqqgyyakfqjwhp5q23vrf3bff1p66nyfl3b"))))
+      (build-system gnu-build-system)
+      (native-inputs
+       `(("chez-scheme" ,chez-scheme)
+         ("texlive" ,texlive)))
+      (arguments
+       `(#:make-flags (list (string-append "PREFIX=" %output)
+                            (string-append "DOCDIR=" %output "/share/doc/"
+                                           ,name "-" ,version)
+                            (string-append "LIBDIR=" %output "/lib/chezweb")
+                            (string-append "TEXDIR=" %output "/share/texmf-local"))
+                      #:tests? #f        ; no tests
+                      #:phases
+                      (modify-phases %standard-phases
+                        (replace 'configure
+                          (lambda* _
+                            (copy-file "config.mk.template" "config.mk")
+                            (substitute* "tangleit"
+                              (("\\./cheztangle\\.ss" all)
+                               (string-append "chez-scheme --program " all)))
+                            (substitute* "weaveit"
+                              (("mpost chezweb\\.mp")
+                               "mpost --tex=tex chezweb.mp")
+                              (("\\./chezweave" all)
+                               (string-append "chez-scheme --program " all)))
+                            (substitute* "installit"
+                              (("-g \\$GROUP -o \\$OWNER") "")))))))
+      (home-page "https://github.com/arcfide/ChezWEB")
+      (synopsis "Hygienic Literate Programming for Chez Scheme")
+      (description "ChezWEB is a system for doing Knuthian style WEB
+programming in Scheme.")
+      (license expat))))
-- 
cgit v1.2.3


From 74f9c19092e6efeef5068dbf6d024c2554d45f07 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Tue, 18 Oct 2016 09:14:34 +0200
Subject: gnu: Add chez-sockets

* gnu/packages/chez.scm (chez-sockets): New variable.
---
 gnu/packages/chez.scm | 79 +++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 79 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/chez.scm b/gnu/packages/chez.scm
index bfcf1b0467..3971535434 100644
--- a/gnu/packages/chez.scm
+++ b/gnu/packages/chez.scm
@@ -273,3 +273,82 @@ and 32-bit PowerPC architectures.")
       (description "ChezWEB is a system for doing Knuthian style WEB
 programming in Scheme.")
       (license expat))))
+
+(define-public chez-sockets
+  (let ((commit "bce96881c06bd69a6757a6bff139744153924140")
+        (revision "1"))
+    (package
+      (name "chez-sockets")
+      (version (string-append "0.0-" revision "."
+                              (string-take commit 7)))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/arcfide/chez-sockets.git")
+               (commit commit)))
+         (file-name (string-append name "-" version "-checkout"))
+         (sha256
+          (base32 "1n5fbwwz51fdzvjackgmnsgh363g9inyxv7kmzi0469cwavwcx5m"))))
+      (build-system gnu-build-system)
+      (native-inputs
+       `(("chez-scheme" ,chez-scheme)
+         ("chez-web" ,chez-web)
+         ("texlive" ,texlive)))
+      (arguments
+       `(#:tests? #f              ; no tests
+         #:phases
+         (modify-phases %standard-phases
+           (replace 'configure
+             (lambda* (#:key outputs inputs #:allow-other-keys)
+               (let* ((out (assoc-ref outputs "out"))
+                      (chez-web (assoc-ref inputs "chez-web"))
+                      (chez (assoc-ref inputs "chez-scheme"))
+                      (chez-h (dirname (car (find-files chez "scheme\\.h")))))
+                 (substitute* "Makefile"
+                   (("(SCHEMEH=).*$" all var)
+                    (string-append var chez-h)))
+                 #t)))
+           (add-before 'build 'tangle
+             (lambda _
+               ;; just using "make" tries to build the .c files before
+               ;; they are created.
+               (and (zero? (system* "make" "sockets"))
+                    (zero? (system* "make")))))
+           (replace 'build
+             (lambda* (#:key outputs inputs #:allow-other-keys)
+               (let* ((out (assoc-ref outputs "out"))
+                      (chez-site (string-append out "/lib/csv"
+                                                ,(package-version chez-scheme)
+                                                "-site/arcfide")))
+                 ;; make sure Chez Scheme can find the shared libraries.
+                 (substitute* "sockets.ss"
+                   (("(load-shared-object) \"(socket-ffi-values\\.[sd][oy].*)\""
+                     all cmd so)
+                    (string-append cmd " \"" chez-site "/" so "\""))
+                   (("sockets-stub\\.[sd][oy].*" all)
+                    (string-append chez-site "/" all)))
+                 ;; to compile chez-sockets, the .so files must be
+                 ;; installed (because of the absolute path we
+                 ;; inserted above).
+                 (for-each (lambda (f d) (install-file f d))
+                           '("socket-ffi-values.so" "sockets-stub.so")
+                           (list chez-site chez-site))
+                 (zero? (system "echo '(compile-file \"sockets.sls\")' | scheme -q")))))
+           (replace 'install
+             (lambda* (#:key outputs inputs #:allow-other-keys)
+               (let* ((out (assoc-ref outputs "out"))
+                      (lib (string-append out "/lib/chez-sockets"))
+                      (doc (string-append out "/share/doc/" ,name "-" ,version))
+                      (chez-site (string-append out "/lib/csv"
+                                                ,(package-version chez-scheme)
+                                                "-site/arcfide")))
+                 (for-each (lambda (f d) (install-file f d))
+                           '("sockets.pdf" "sockets.so")
+                           (list doc chez-site))
+                 #t))))))
+      (home-page "https://github.com/arcfide/chez-sockets")
+      (synopsis "Extensible sockets library for Chez Scheme")
+      (description "Chez-sockets is an extensible sockets library for
+Chez Scheme.")
+      (license expat))))
-- 
cgit v1.2.3


From 387541907fbd948cafad300b48dc8cc15cb1a6c3 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Tue, 18 Oct 2016 09:16:06 +0200
Subject: gnu: Add chez-matchable

* gnu/packages/chez.scm (chez-matchable): New variable.
---
 gnu/packages/chez.scm | 47 +++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 47 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/chez.scm b/gnu/packages/chez.scm
index 3971535434..366923b6a0 100644
--- a/gnu/packages/chez.scm
+++ b/gnu/packages/chez.scm
@@ -352,3 +352,50 @@ programming in Scheme.")
       (description "Chez-sockets is an extensible sockets library for
 Chez Scheme.")
       (license expat))))
+
+;; Help function for Chez Scheme to add the current path to
+;; CHEZSCHEMELIBDIRS.
+(define chez-configure
+  '(lambda _
+     (let ((chez-env (getenv "CHEZSCHEMELIBDIRS")))
+       (setenv "CHEZSCHEMELIBDIRS"
+               (if chez-env
+                   (string-append ".:" chez-env)
+                   "."))
+       #t)))
+
+;; Help function to define make flags for some Chez Scheme custom make
+;; files.
+(define (chez-make-flags name version)
+  `(let ((out (assoc-ref %outputs "out")))
+     (list (string-append "PREFIX=" out)
+           (string-append "DOCDIR=" out "/share/doc/"
+                          ,name "-" ,version))))
+
+(define-public chez-matchable
+  (package
+    (name "chez-matchable")
+    (version "20160306")
+    (home-page "https://github.com/fedeinthemix/chez-matchable")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append home-page "/archive" "/v" version ".tar.gz"))
+       (sha256
+        (base32 "0cl4vc6487pikjq159pj4n5ghyaax31nywb5n4yn1682h3ir1hs0"))
+       (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("chez-srfi" ,chez-srfi))) ; for tests
+    (native-inputs
+     `(("chez-scheme" ,chez-scheme)))
+    (arguments
+     `(#:make-flags ,(chez-make-flags name version)
+       #:test-target "test"
+       #:phases (modify-phases %standard-phases
+                  (replace 'configure ,chez-configure))))
+    (synopsis "Portable hygienic pattern matcher for Scheme")
+    (description "This package provides a superset of the popular Scheme
+@code{match} package by Andrew Wright, written in fully portable
+@code{syntax-rules} and thus preserving hygiene.")
+    (license public-domain)))
-- 
cgit v1.2.3


From 87d6c9ef8a09556a4af678fa158decf28732b631 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 16:10:31 +0200
Subject: gnu: Add chez-irregex.

* gnu/packages/chez.scm (chez-irregex): New variable.
---
 gnu/packages/chez.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/chez.scm b/gnu/packages/chez.scm
index 366923b6a0..1574431084 100644
--- a/gnu/packages/chez.scm
+++ b/gnu/packages/chez.scm
@@ -399,3 +399,36 @@ Chez Scheme.")
 @code{match} package by Andrew Wright, written in fully portable
 @code{syntax-rules} and thus preserving hygiene.")
     (license public-domain)))
+
+(define-public chez-irregex
+  (package
+    (name "chez-irregex")
+    (version "0.9.4")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://github.com/fedeinthemix/chez-irregex/archive"
+             "/v" version ".tar.gz"))
+       (sha256
+        (base32 "0ywy5syaw549a58viz68dmgnv756ic705rcnlqxgjq27lnaim53b"))
+       (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("chez-matchable" ,chez-matchable))) ; for tests
+    (propagated-inputs
+     `(("chez-srfi" ,chez-srfi))) ; for irregex-utils
+    (native-inputs
+     `(("chez-scheme" ,chez-scheme)))
+    (arguments
+     `(#:make-flags ,(chez-make-flags name version)
+       #:test-target "test"
+       #:phases (modify-phases %standard-phases
+                  (replace 'configure ,chez-configure))))
+    (home-page "https://github.com/fedeinthemix/chez-irregex")
+    (synopsis "Portable regular expression library for Scheme")
+    (description "This package provides a portable and efficient
+R[4567]RS implementation of regular expressions, supporting both POSIX
+syntax with various (irregular) PCRE extensions, as well as SCSH's SRE
+syntax, with various aliases for commonly used patterns.")
+    (license bsd-3)))
-- 
cgit v1.2.3


From fb6d2d75f3166af28959aab63fd001bda8aa77bb Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 16:12:25 +0200
Subject: gnu: Add chez-fmt.

* gnu/packages/chez.scm (chez-fmt): New variable.
---
 gnu/packages/chez.scm | 38 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/chez.scm b/gnu/packages/chez.scm
index 1574431084..0a74c3f87e 100644
--- a/gnu/packages/chez.scm
+++ b/gnu/packages/chez.scm
@@ -432,3 +432,41 @@ R[4567]RS implementation of regular expressions, supporting both POSIX
 syntax with various (irregular) PCRE extensions, as well as SCSH's SRE
 syntax, with various aliases for commonly used patterns.")
     (license bsd-3)))
+
+(define-public chez-fmt
+  (package
+    (name "chez-fmt")
+    (version "0.8.11")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "http://synthcode.com/scheme/fmt/fmt-" version ".tar.gz"))
+       (sha256
+        (base32 "1zxqlw1jyg85yzclylh8bp2b3fwcy3l3xal68jw837n5illvsjcl"))
+       (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system gnu-build-system)
+    (propagated-inputs
+     `(("chez-srfi" ,chez-srfi))) ; for irregex-utils
+    (native-inputs
+     `(("chez-scheme" ,chez-scheme)))
+    (arguments
+     `(#:make-flags ,(chez-make-flags name version)
+       #:test-target "chez-check"
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'configure ,chez-configure)
+         (replace 'build
+           (lambda* (#:key (make-flags '()) #:allow-other-keys)
+             (zero? (apply system* "make" "chez-build" make-flags))))
+         (replace 'install
+           (lambda* (#:key (make-flags '()) #:allow-other-keys)
+             (zero? (apply system* "make" "chez-install" make-flags)))))))
+    (home-page "http://synthcode.com/scheme/fmt")
+    (synopsis "Combinator formatting library for Chez Scheme")
+    (description "This package provides a library of procedures for
+formatting Scheme objects to text in various ways, and for easily
+concatenating, composing and extending these formatters efficiently
+without resorting to capturing and manipulating intermediate
+strings.")
+    (license bsd-3)))
-- 
cgit v1.2.3


From 725dddd7fba133b073a8434726734e16531d31f4 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 16:19:32 +0200
Subject: gnu: Add ghc-storable-complex.

* gnu/packages/haskell.scm (ghc-storable-complex): New variable.
---
 gnu/packages/haskell.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 52e4bc3484..50b09efd02 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -7598,4 +7598,25 @@ versions of these packages distributed with different versions of GHC.
 In particular, this library supports working with POSIX files that have paths
 which can't be decoded in the current locale encoding.")
     (license license:expat)))
+
+(define-public ghc-storable-complex
+  (package
+    (name "ghc-storable-complex")
+    (version "0.2.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "http://hackage.haskell.org/package/storable-complex/storable-complex-"
+             version ".tar.gz"))
+       (sha256
+        (base32 "01kwwkpbfjrv26vj83cd92px5qbq1bpgxj0r45534aksqhany1xb"))))
+    (build-system haskell-build-system)
+    (home-page "https://github.com/cartazio/storable-complex")
+    (synopsis "Haskell Storable instance for Complex")
+    (description "This package provides a Haskell library including a
+Storable instance for Complex which is binary compatible with C99, C++
+and Fortran complex data types.")
+    (license license:bsd-3)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From 95595618b116774ac5e4ba86c0e02ea0b46dbed3 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 16:25:26 +0200
Subject: gnu: Add ghc-hmatrix.

* gnu/packages/haskell.scm (ghc-hmatrix): New variable.
---
 gnu/packages/haskell.scm | 33 ++++++++++++++++++++++++++++++++-
 1 file changed, 32 insertions(+), 1 deletion(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 50b09efd02..cca35d9b70 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
+;;; Copyright © 2015, 2016 Federico Beffa <beffa@fbengineering.ch>
 ;;; Copyright © 2015 Siniša Biđin <sinisa@bidin.eu>
 ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
 ;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org>
@@ -44,6 +44,7 @@
   #:use-module (gnu packages libffi)
   #:use-module (gnu packages libedit)
   #:use-module (gnu packages lua)
+  #:use-module (gnu packages maths)
   #:use-module (gnu packages multiprecision)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages python)
@@ -7619,4 +7620,34 @@ Storable instance for Complex which is binary compatible with C99, C++
 and Fortran complex data types.")
     (license license:bsd-3)))
 
+(define-public ghc-hmatrix
+  (package
+    (name "ghc-hmatrix")
+    (version "0.17.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "http://hackage.haskell.org/package/hmatrix/hmatrix-"
+             version ".tar.gz"))
+       (sha256
+        (base32 "1fgsrh2y9y971pzrd3767rg97bjr1ghpdvwmn1nn65s90rc9bv98"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-random" ,ghc-random)
+       ("ghc-split" ,ghc-split)
+       ("ghc-storable-complex" ,ghc-storable-complex)
+       ("ghc-vector" ,ghc-vector)
+       ;;("openblas" ,openblas)
+       ("lapack" ,lapack)))
+    ;; Guix's OpenBLAS is built with the flag "NO_LAPACK=1" which
+    ;; disables inclusion of the LAPACK functions.
+    ;; (arguments `(#:configure-flags '("--flags=openblas")))
+    (home-page "https://github.com/albertoruiz/hmatrix")
+    (synopsis "Haskell numeric linear algebra library")
+    (description "The HMatrix package provices a Haskell library for
+dealing with linear systems, matrix decompositions, and other
+numerical computations based on BLAS and LAPACK.")
+    (license license:bsd-3)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From 932104abcec762a219f36f234c8b6138810735c2 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 16:27:41 +0200
Subject: gnu: Add ghc-hmatrix-gsl.

* gnu/packages/haskell.scm (ghc-hmatrix-gsl): New variable.
---
 gnu/packages/haskell.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index cca35d9b70..9c343cfb92 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -7650,4 +7650,30 @@ dealing with linear systems, matrix decompositions, and other
 numerical computations based on BLAS and LAPACK.")
     (license license:bsd-3)))
 
+(define-public ghc-hmatrix-gsl
+  (package
+    (name "ghc-hmatrix-gsl")
+    (version "0.17.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "http://hackage.haskell.org/package/hmatrix-gsl/hmatrix-gsl-"
+             version ".tar.gz"))
+       (sha256
+        (base32 "1jbqwn9d2nldc4klhy0n8gcxr889h0daw2mjfhwgksfy1bwfjl7w"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-hmatrix" ,ghc-hmatrix)
+       ("ghc-vector" ,ghc-vector)
+       ("ghc-random" ,ghc-random)
+       ("gsl" ,gsl)))
+    (native-inputs `(("pkg-config" ,pkg-config)))
+    (home-page "https://github.com/albertoruiz/hmatrix")
+    (synopsis "Haskell GSL binding")
+    (description "This Haskell library provides a purely functional
+interface to selected numerical computations, internally implemented
+using GSL.")
+    (license license:gpl3+)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From 271a5365aa9d31edd4c4b69cc36b73b37d4a930a Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 16:29:51 +0200
Subject: gnu: Add ghc-hmatrix-special.

* gnu/packages/haskell.scm (ghc-hmatrix-special): New variable.
---
 gnu/packages/haskell.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 9c343cfb92..8a458c6e03 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -7676,4 +7676,27 @@ interface to selected numerical computations, internally implemented
 using GSL.")
     (license license:gpl3+)))
 
+(define-public ghc-hmatrix-special
+  (package
+    (name "ghc-hmatrix-special")
+    (version "0.4.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri
+        (string-append
+         "http://hackage.haskell.org/package/hmatrix-special/hmatrix-special-"
+         version ".tar.gz"))
+       (sha256
+        (base32 "0cr9y3swzj7slrd84g1nhdkp1kpq4q5ihwapmiaidpr2bv3hrfhz"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-hmatrix" ,ghc-hmatrix)
+       ("ghc-hmatrix-gsl" ,ghc-hmatrix-gsl)))
+    (home-page "https://github.com/albertoruiz/hmatrix")
+    (synopsis "Haskell interface to GSL special functions")
+    (description "This library provides an interface to GSL special
+functions for Haskell.")
+    (license license:gpl3+)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From 4225c7116d934167dee3cfab2ff04d57c6a1e46a Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 16:32:03 +0200
Subject: gnu: Add ghc-hmatrix-gsl-stats.

* gnu/packages/haskell.scm (ghc-hmatrix-gsl-stats): New variable.
---
 gnu/packages/haskell.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 8a458c6e03..1c16e18ad8 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -7699,4 +7699,30 @@ using GSL.")
 functions for Haskell.")
     (license license:gpl3+)))
 
+(define-public ghc-hmatrix-gsl-stats
+  (package
+    (name "ghc-hmatrix-gsl-stats")
+    (version "0.4.1.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri
+        (string-append
+         "http://hackage.haskell.org/package/hmatrix-gsl-stats/hmatrix-gsl-stats-"
+         version ".tar.gz"))
+       (sha256
+        (base32 "0f3pzi494n4js0xiq5b38n07cnby0h9da6gmwywf8plvxm9271fl"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-vector" ,ghc-vector)
+       ("ghc-storable-complex" ,ghc-storable-complex)
+       ("ghc-hmatrix" ,ghc-hmatrix)
+       ("gsl" ,gsl)))
+    (native-inputs `(("pkg-config" ,pkg-config)))
+    (home-page "http://code.haskell.org/hmatrix-gsl-stats")
+    (synopsis "GSL Statistics interface for Haskell")
+    (description "This Haskell library provides a purely functional
+interface for statistics based on hmatrix and GSL.")
+    (license license:bsd-3)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From db61a00971fbc4f197dd147419fa66212169e4b4 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 16:53:06 +0200
Subject: gnu: Add ghc-easyplot.

* gnu/packages/haskell.scm (ghc-easyplot): New variable.
---
 gnu/packages/haskell.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 1c16e18ad8..8d8330805e 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -7725,4 +7725,28 @@ functions for Haskell.")
 interface for statistics based on hmatrix and GSL.")
     (license license:bsd-3)))
 
+(define-public ghc-easyplot
+  (package
+    (name "ghc-easyplot")
+    (version "1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "http://hackage.haskell.org/package/easyplot/easyplot-"
+             version ".tar.gz"))
+       (sha256
+        (base32 "18kndgvdj2apjpfga6fp7m16y1gx8zrwp3c5vfj03sx4v6jvciqk"))))
+    (build-system haskell-build-system)
+    (propagated-inputs `(("gnuplot" ,gnuplot)))
+    (arguments
+     `(#:phases (modify-phases %standard-phases
+                  (add-after 'unpack 'fix-setup-suffix
+                    (lambda _ (rename-file "Setup.lhs" "Setup.hs") #t)))))
+    (home-page "http://hub.darcs.net/scravy/easyplot")
+    (synopsis "Haskell plotting library based on gnuplot")
+    (description "This package provides a plotting library for
+Haskell, using gnuplot for rendering.")
+    (license license:expat)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From 1bd00f1737021370a031db43f890b4ae57aa2d13 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 16:55:18 +0200
Subject: gnu: Add ghc-hashtables.

* gnu/packages/haskell.scm (ghc-hashtables): New variable.
---
 gnu/packages/haskell.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 8d8330805e..ae8d6e677a 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -7749,4 +7749,29 @@ interface for statistics based on hmatrix and GSL.")
 Haskell, using gnuplot for rendering.")
     (license license:expat)))
 
+(define-public ghc-hashtables
+  (package
+    (name "ghc-hashtables")
+    (version "1.2.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "http://hackage.haskell.org/package/hashtables/hashtables-"
+             version ".tar.gz"))
+       (sha256
+        (base32 "1b6w9xznk42732vpd8ili60k12yq190xnajgga0iwbdpyg424lgg"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-hashable" ,ghc-hashable)
+       ("ghc-primitive" ,ghc-primitive)
+       ("ghc-vector" ,ghc-vector)))
+    (home-page "http://github.com/gregorycollins/hashtables")
+    (synopsis "Haskell Mutable hash tables in the ST monad")
+    (description "This package provides a Haskell library including a
+couple of different implementations of mutable hash tables in the ST
+monad, as well as a typeclass abstracting their common operations, and
+a set of wrappers to use the hash tables in the IO monad.")
+    (license license:bsd-3)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From 7d95c0006a4ea505a78bf42707e5abcce4870170 Mon Sep 17 00:00:00 2001
From: Federico Beffa <beffa@fbengineering.ch>
Date: Sun, 16 Oct 2016 17:01:46 +0200
Subject: gnu: Add GHC 8.0.1.

* gnu/packages/haskell.scm (ghc-8): New variable.
---
 gnu/packages/haskell.scm | 128 +++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 128 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index ae8d6e677a..a933162b8b 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -261,6 +261,134 @@
 interactive environment for the functional language Haskell.")
     (license license:bsd-3)))
 
+(define-public ghc-8
+  (package
+    (name "ghc")
+    (version "8.0.1")
+    (source
+     (origin
+      (method url-fetch)
+      (uri (string-append "https://www.haskell.org/ghc/dist/"
+                          version "/" name "-" version "-src.tar.xz"))
+      (sha256
+       (base32 "1lniqy29djhjkddnailpaqhlqh4ld2mqvb1fxgxw1qqjhz6j1ywh"))))
+    (build-system gnu-build-system)
+    (supported-systems '("i686-linux" "x86_64-linux"))
+    (outputs '("out" "doc"))
+    (inputs
+     `(("gmp" ,gmp)
+       ("ncurses" ,ncurses)
+       ("libffi" ,libffi)
+       ("libedit" ,libedit)
+       ("ghc-testsuite"
+        ,(origin
+           (method url-fetch)
+           (uri (string-append
+                 "https://www.haskell.org/ghc/dist/"
+                 version "/" name "-" version "-testsuite.tar.xz"))
+           (sha256
+            (base32 "0lc1vjivkxn01aw3jg2gd7fmqb5pj7a5j987c7pn5r7caqv1cmxw"))))))
+    (native-inputs
+     `(("perl" ,perl)
+       ("python" ,python-2)                ; for tests
+       ("ghostscript" ,ghostscript)        ; for tests
+       ;; GHC is built with GHC.
+       ("ghc-bootstrap" ,ghc)))
+    (arguments
+     `(#:test-target "test"
+       ;; We get a smaller number of test failures by disabling parallel test
+       ;; execution.
+       #:parallel-tests? #f
+
+       ;; The DSOs use $ORIGIN to refer to each other, but (guix build
+       ;; gremlin) doesn't support it yet, so skip this phase.
+       #:validate-runpath? #f
+
+       ;; Don't pass --build=<triplet>, because the configure script
+       ;; auto-detects slightly different triplets for --host and --target and
+       ;; then complains that they don't match.
+       #:build #f
+
+       #:modules ((guix build gnu-build-system)
+                  (guix build utils)
+                  (guix build rpath)
+                  (srfi srfi-26)
+                  (srfi srfi-1))
+       #:imported-modules (,@%gnu-build-system-modules
+                           (guix build rpath))
+       #:configure-flags
+       (list
+        (string-append "--with-gmp-libraries="
+                       (assoc-ref %build-inputs "gmp") "/lib")
+        (string-append "--with-gmp-includes="
+                       (assoc-ref %build-inputs "gmp") "/include")
+        "--with-system-libffi"
+        (string-append "--with-ffi-libraries="
+                       (assoc-ref %build-inputs "libffi") "/lib")
+        (string-append "--with-ffi-includes="
+                       (assoc-ref %build-inputs "libffi") "/include")
+        (string-append "--with-curses-libraries="
+                       (assoc-ref %build-inputs "ncurses") "/lib")
+        (string-append "--with-curses-includes="
+                       (assoc-ref %build-inputs "ncurses") "/include"))
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'unpack-testsuite
+           (lambda* (#:key inputs #:allow-other-keys)
+             (with-directory-excursion ".."
+               (copy-file (assoc-ref inputs "ghc-testsuite")
+                          "ghc-testsuite.tar.xz")
+               (zero? (system* "tar" "xvf" "ghc-testsuite.tar.xz")))))
+         (add-before 'build 'fix-lib-paths
+           (lambda _
+             (substitute*
+                 (list "libraries/process/System/Process/Posix.hs"
+                       "libraries/process/tests/process001.hs"
+                       "libraries/process/tests/process002.hs"
+                       "libraries/unix/cbits/execvpe.c")
+               (("/bin/sh") (which "sh"))
+               (("/bin/ls") (which "ls")))
+             #t))
+         (add-before 'build 'fix-environment
+           (lambda _
+             (unsetenv "GHC_PACKAGE_PATH")
+             (setenv "CONFIG_SHELL" (which "bash"))
+             #t))
+         (add-before 'check 'fix-testsuite
+           (lambda _
+             (substitute*
+                 (list "testsuite/timeout/Makefile"
+                       "testsuite/timeout/timeout.py"
+                       "testsuite/timeout/timeout.hs"
+                       "testsuite/tests/programs/life_space_leak/life.test")
+               (("/bin/sh") (which "sh"))
+               (("/bin/rm") "rm"))
+             #t))
+         ;; the testsuite can't find shared libraries.
+         (add-before 'check 'configure-testsuite
+           (lambda* (#:key inputs #:allow-other-keys)
+             (let* ((gmp (assoc-ref inputs "gmp"))
+                    (gmp-lib (string-append gmp "/lib"))
+                    (ffi (assoc-ref inputs "libffi"))
+                    (ffi-lib (string-append ffi "/lib"))
+                    (ncurses (assoc-ref inputs "ncurses"))
+                    (ncurses-lib (string-append ncurses "/lib")))
+               (setenv "LD_LIBRARY_PATH"
+                       (string-append gmp-lib ":" ffi-lib ":" ncurses-lib))
+               #t))))))
+    (native-search-paths (list (search-path-specification
+                                (variable "GHC_PACKAGE_PATH")
+                                (files (list
+                                        (string-append "lib/ghc-" version)))
+                                (file-pattern ".*\\.conf\\.d$")
+                                (file-type 'directory))))
+    (home-page "https://www.haskell.org/ghc")
+    (synopsis "The Glasgow Haskell Compiler")
+    (description
+     "The Glasgow Haskell Compiler (GHC) is a state-of-the-art compiler and
+interactive environment for the functional language Haskell.")
+    (license license:bsd-3)))
+
 (define-public ghc-hostname
   (package
     (name "ghc-hostname")
-- 
cgit v1.2.3


From 2acaaee55007ddae404661e9f260ca720cbcda2d Mon Sep 17 00:00:00 2001
From: Roel Janssen <roel@gnu.org>
Date: Wed, 19 Oct 2016 09:55:45 +0200
Subject: gnu: Add r-getopt.

* gnu/packages/bioinformatics.scm (r-getopt): New variable.
---
 gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 43faaa078f..a7e4d0990d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5888,6 +5888,28 @@ packages.")
 Bioconductor, CRAN, and Github.")
     (license license:artistic2.0)))
 
+(define-public r-getopt
+  (package
+    (name "r-getopt")
+    (version "1.20.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "getopt" version))
+       (sha256
+        (base32
+         "00f57vgnzmg7cz80rjmjz1556xqcmx8nhrlbbhaq4w7gl2ibl87r"))))
+    (build-system r-build-system)
+    (home-page "https://github.com/trevorld/getopt")
+    (synopsis "Command-line option processor for R")
+    (description
+     "This package is designed to be used with Rscript to write shebang
+scripts that accept short and long options.  Many users will prefer to
+use the packages @code{optparse} or @code{argparse} which add extra
+features like automatically generated help options and usage texts,
+support for default values, positional argument support, etc.")
+    (license license:gpl2+)))
+
 (define-public r-dnacopy
   (package
     (name "r-dnacopy")
-- 
cgit v1.2.3


From c79ad57a8def00a3fbefc7cac1f2306aaa1056bd Mon Sep 17 00:00:00 2001
From: Roel Janssen <roel@gnu.org>
Date: Wed, 19 Oct 2016 10:48:56 +0200
Subject: gnu: Add r-optparse.

* gnu/packages/bioinformatics.scm (r-optparse): New variable.
---
 gnu/packages/bioinformatics.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a7e4d0990d..00770e8fbb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5910,6 +5910,29 @@ features like automatically generated help options and usage texts,
 support for default values, positional argument support, etc.")
     (license license:gpl2+)))
 
+(define-public r-optparse
+  (package
+    (name "r-optparse")
+    (version "1.3.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "optparse" version))
+       (sha256
+        (base32
+         "1g8as89r91xxi5j5azsd6vrfrhg84mnfx2683j7pacdp8s33radw"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-getopt" ,r-getopt)))
+    (home-page
+     "https://github.com/trevorld/optparse")
+    (synopsis "Command line option parser")
+    (description
+     "This package provides a command line parser inspired by Python's
+@code{optparse} library to be used with Rscript to write shebang scripts
+that accept short and long options.")
+    (license license:gpl2+)))
+
 (define-public r-dnacopy
   (package
     (name "r-dnacopy")
-- 
cgit v1.2.3


From b5a5fb192788a1930c168f635d52a1e4532b7cf6 Mon Sep 17 00:00:00 2001
From: Hartmut Goebel <h.goebel@crazy-compilers.com>
Date: Wed, 19 Oct 2016 11:52:54 +0200
Subject: gnu: python-dateutil, python-dateutil-2: Update to new home-page.

* gnu/packages/python.scm (python-dateutil, python2-dateutil,
  python-dateutil-2, python2-dateutil-2)[home-page]: Update URL.
---
 gnu/packages/python.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index c5a39f49ee..57dcd832f3 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -958,7 +958,7 @@ Python file, so it can be easily copied into your project.")
     (build-system python-build-system)
     (inputs
      `(("python-six" ,python-six)))
-    (home-page "http://labix.org/python-dateutil")
+    (home-page "https://dateutil.readthedocs.io/en/stable/")
     (synopsis "Extensions to the standard datetime module")
     (description
      "The dateutil module provides powerful extensions to the standard
@@ -988,7 +988,7 @@ datetime module, available in Python 2.3+.")
     (build-system python-build-system)
     (inputs
      `(("python-setuptools" ,python-setuptools)))
-    (home-page "http://labix.org/python-dateutil")
+    (home-page "https://dateutil.readthedocs.io/en/stable/")
     (synopsis "Extensions to the standard datetime module")
     (description
      "The dateutil module provides powerful extensions to the standard
-- 
cgit v1.2.3


From b747718e230eba267ae158d03d506527bfe1a67a Mon Sep 17 00:00:00 2001
From: Benz Schenk <benz.schenk@uzh.ch>
Date: Tue, 18 Oct 2016 17:28:23 +0200
Subject: gnu: Add iperf.

* gnu/packages/networking.scm (iperf): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
---
 gnu/packages/networking.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm
index 4b77aad792..da92379a85 100644
--- a/gnu/packages/networking.scm
+++ b/gnu/packages/networking.scm
@@ -10,6 +10,7 @@
 ;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
 ;;; Copyright © 2016 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2016 Benz Schenk <benz.schenk@uzh.ch>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -927,3 +928,27 @@ HTTPS on port 443, allowing SSH connections from inside corporate firewalls
 that block port 22.")
     (license (list license:bsd-2        ; tls.[ch]
                    license:gpl2+))))    ; everything else
+
+(define-public iperf
+  (package
+    (name "iperf")
+    (version "3.1.3")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://downloads.es.net/pub/iperf"
+                                  "/iperf-" version ".tar.gz"))
+              (sha256
+                (base32
+                 "1gwmhm29zlp5grrpglmqj7vgx19s6xy33hk6hpbn8jnpn5lxpn30"))))
+    (build-system gnu-build-system)
+    (synopsis "TCP, UDP and SCTP bandwidth measurement tool")
+    (description
+     "iPerf is a tool to measure achievable bandwidth on IP networks.  It
+supports tuning of various parameters related to timing, buffers and
+protocols (TCP, UDP, SCTP with IPv4 and IPv6).  For each test it reports
+the bandwidth, loss, and other parameters.")
+    (home-page "http://software.es.net/iperf/")
+    (license (list license:bsd-3             ; Main distribution.
+                   license:ncsa              ; src/{units,iperf_locale,tcp_window_size}.c
+                   license:expat             ; src/{cjson,net}.[ch]
+                   license:public-domain)))) ; src/portable_endian.h
-- 
cgit v1.2.3


From 207ce8fbe5a906789aafa4d337675c627ce592d8 Mon Sep 17 00:00:00 2001
From: Roel Janssen <roel@gnu.org>
Date: Wed, 19 Oct 2016 15:09:55 +0200
Subject: gnu: Add r-biocviews.

* gnu/packages/bioinformatics.scm (r-biocviews): New variable.
---
 gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 00770e8fbb..d58227408c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5888,6 +5888,34 @@ packages.")
 Bioconductor, CRAN, and Github.")
     (license license:artistic2.0)))
 
+(define-public r-biocviews
+  (package
+    (name "r-biocviews")
+    (version "1.42.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "biocViews" version))
+              (sha256
+               (base32
+                "07rjk10b91pkriyq297w86199r2d3sfji3ggs9mq2gyalsa8y4b6"))))
+    (properties
+     `((upstream-name . "biocViews")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biobase" ,r-biobase)
+       ("r-graph" ,r-graph)
+       ("r-rbgl" ,r-rbgl)
+       ("r-rcurl" ,r-rcurl)
+       ("r-xml" ,r-xml)
+       ("r-knitr" ,r-knitr)
+       ("r-runit" ,r-runit)))
+    (home-page "http://bioconductor.org/packages/biocViews")
+    (synopsis "Bioconductor package categorization helper")
+    (description "The purpose of biocViews is to create HTML pages that
+categorize packages in a Bioconductor package repository according to keywords,
+also known as views, in a controlled vocabulary.")
+    (license license:artistic2.0)))
+
 (define-public r-getopt
   (package
     (name "r-getopt")
-- 
cgit v1.2.3


From 99df12cd1921dd497bb4fcdd96ee40e358d71e6d Mon Sep 17 00:00:00 2001
From: Roel Janssen <roel@gnu.org>
Date: Wed, 19 Oct 2016 15:21:17 +0200
Subject: gnu: Add r-biocstyle.

* gnu/packages/bioinformatics.scm (r-biocstyle): New variable.
---
 gnu/packages/bioinformatics.scm | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d58227408c..3fe7b5f3ae 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5916,6 +5916,26 @@ categorize packages in a Bioconductor package repository according to keywords,
 also known as views, in a controlled vocabulary.")
     (license license:artistic2.0)))
 
+(define-public r-biocstyle
+  (package
+   (name "r-biocstyle")
+   (version "2.2.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "BiocStyle" version))
+              (sha256
+               (base32
+                "0qbk23fz8cn260isd9xlh9lxfj4adar6iqzai01c4kz0p31f45za"))))
+    (properties
+     `((upstream-name . "BiocStyle")))
+    (build-system r-build-system)
+    (home-page "http://bioconductor.org/packages/BiocStyle")
+    (synopsis "Bioconductor formatting styles")
+    (description "This package provides standard formatting styles for
+Bioconductor PDF and HTML documents.  Package vignettes illustrate use and
+functionality.")
+    (license license:artistic2.0)))
+
 (define-public r-getopt
   (package
     (name "r-getopt")
-- 
cgit v1.2.3


From a966281f2da1a8b6bc45cbd208c28e39b05a0373 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= <ludo@gnu.org>
Date: Tue, 18 Oct 2016 23:40:54 +0200
Subject: gnu: glfw: Propagate the relevant inputs.

* gnu/packages/gl.scm (glfw)[inputs]: Rename to...
[propagated-inputs]: ... this.  Add LIBXXF86VM.
---
 gnu/packages/gl.scm | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/gl.scm b/gnu/packages/gl.scm
index a4ec3a3536..c40d100a93 100644
--- a/gnu/packages/gl.scm
+++ b/gnu/packages/gl.scm
@@ -561,12 +561,15 @@ OpenGL.")
     (native-inputs
      `(("doxygen" ,doxygen)
        ("unzip" ,unzip)))
-    (inputs
-     `(("mesa" ,mesa)
+    (propagated-inputs
+     `(("mesa" ,mesa)                             ;included in public headers
+
+       ;; These are in 'Requires.private' of 'glfw3.pc'.
        ("libx11" ,libx11)
        ("libxrandr" ,libxrandr)
        ("libxinerama" ,libxinerama)
-       ("libxcursor" ,libxcursor)))
+       ("libxcursor" ,libxcursor)
+       ("libxxf86vm" ,libxxf86vm)))
     (home-page "http://www.glfw.org")
     (synopsis "OpenGL application development library")
     (description
-- 
cgit v1.2.3


From 4534d85e706b58530bf6bd01dc1497fa55a085a6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= <ludo@gnu.org>
Date: Wed, 19 Oct 2016 10:39:59 +0200
Subject: gnu: Add Ao.

* gnu/packages/engineering.scm (ao): New variable.
---
 gnu/packages/engineering.scm | 102 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 102 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index dad38e0310..829ceb0c55 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -3,6 +3,7 @@
 ;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
 ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 David Thompson <davet@gnu.org>
+;;; Copyright © 2016 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -29,11 +30,14 @@
   #:use-module (guix utils)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system cmake)
   #:use-module (gnu packages)
+  #:use-module (gnu packages algebra)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages bison)
   #:use-module (gnu packages boost)
+  #:use-module (gnu packages check)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages fontutils)
@@ -45,6 +49,7 @@
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages guile)
+  #:use-module (gnu packages image)
   #:use-module (gnu packages linux)               ;FIXME: for pcb
   #:use-module (gnu packages m4)
   #:use-module (gnu packages maths)
@@ -460,3 +465,100 @@ you load several files on top of each other, do measurements on the displayed
 image, etc.  Besides viewing Gerbers, you may also view Excellon drill files
 as well as pick-place files.")
     (license license:gpl2+)))
+
+(define-public ao
+  (let ((commit "0bc2354b8dcd1a82a0fd6647706b126045e52734"))
+    (package
+      (name "ao-cad")            ;XXX: really "ao", but it collides with libao
+      (version (string-append "0." (string-take commit 7)))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/mkeeter/ao")
+                      (commit commit)))
+                (sha256
+                 (base32
+                  "0lm7iljklafs8dhlvaab2yhwx4xymrdjrqk9c5xvn59hlvbgl1j5"))
+                (file-name (string-append name "-" version "-checkout"))
+                (modules '((guix build utils)))
+                (snippet
+                 ;; Remove bundled libraries: Eigen, glm, and catch.  TODO:
+                 ;; Unbundle efsw <https://github.com/diegostamigni/efsw>.
+                 '(begin
+                    (delete-file-recursively "vendor")
+
+                    ;; Use #include <catch.hpp>.
+                    (substitute* (find-files "." "\\.[ch]pp$")
+                      (("catch/catch\\.hpp")
+                       "catch.hpp"))))))
+      (build-system cmake-build-system)
+      (arguments
+       `(;; Have the RUNPATH of libao.so point to $libdir, where libefsw.so
+         ;; lives.
+         #:configure-flags (list (string-append "-DCMAKE_SHARED_LINKER_FLAGS="
+                                                "-Wl,-rpath="
+                                                (assoc-ref %outputs "out")
+                                                "/lib"))
+
+         #:phases
+         (modify-phases %standard-phases
+           (add-before 'build 'add-eigen-to-search-path
+             (lambda* (#:key inputs #:allow-other-keys)
+               ;; Allow things to find our own Eigen and Catch.
+               (let ((eigen (assoc-ref inputs "eigen")))
+                 (setenv "CPLUS_INCLUDE_PATH"
+                         (string-append eigen "/include/eigen3:"
+                                        (getenv "CPLUS_INCLUDE_PATH")))
+                 #t)))
+           (add-after 'install 'install-guile-bindings
+             (lambda* (#:key outputs #:allow-other-keys)
+               ;; Install the Guile bindings (the build system only installs
+               ;; libao.so.)
+               (let* ((out    (assoc-ref outputs "out"))
+                      (moddir (string-append out "/share/guile/site/2.0")))
+                 (install-file "bind/libao.so"
+                               (string-append out "/lib"))
+
+                 ;; Go to the source directory.
+                 (with-directory-excursion ,(string-append "../"
+                                                           name "-" version
+                                                           "-checkout")
+                   (substitute* "bind/guile/ao/bind.scm"
+                     (("\\(define libao \\(dynamic-link .*$")
+                      (string-append "(define libao (dynamic-link \""
+                                     out "/lib/libao\")) ;")))
+
+                   (for-each (lambda (file)
+                               (install-file file
+                                             (string-append moddir
+                                                            "/ao")))
+                             (find-files "bind/guile" "\\.scm$"))
+
+                   (substitute* "bin/ao-guile"
+                     (("\\(add-to-load-path .*")
+                      (string-append "(add-to-load-path \"" moddir "\")")))
+
+                   (install-file "bin/ao-guile"
+                                 (string-append out "/bin"))
+                   #t)))))))
+      (native-inputs
+       `(("pkg-config" ,pkg-config)))
+      (inputs
+       `(("boost" ,boost)
+         ("catch" ,catch-framework)
+         ("libpng" ,libpng)
+         ("glfw" ,glfw)
+         ("libepoxy" ,libepoxy)
+         ("eigen" ,eigen)
+         ("glm" ,glm)
+         ("guile" ,guile-2.0)))
+      (home-page "http://www.mattkeeter.com/projects/ao/")
+      (synopsis "Tool for programmatic computer-aided design")
+      (description
+       "Ao is a tool for programmatic computer-aided design (CAD).  In Ao,
+solid models are defined as Scheme scripts, and there are no opaque function
+calls into the geometry kernel: everything is visible to the user.  Even
+fundamental, primitive shapes are represented as code in the user-level
+language.")
+      (license (list license:lgpl2.1+             ;library
+                     license:gpl2+)))))           ;Guile bindings
-- 
cgit v1.2.3


From fa216a4d017828819ae4c3e25b3f69e07729f046 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 19 Oct 2016 17:05:37 +0300
Subject: gnu: zile: Update to 2.4.13.

* gnu/packages/zile.scm (zile): Update to 2.4.13.
[home-page]: Use https.
---
 gnu/packages/zile.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/zile.scm b/gnu/packages/zile.scm
index f1c03fb64c..88aaf75c50 100644
--- a/gnu/packages/zile.scm
+++ b/gnu/packages/zile.scm
@@ -32,14 +32,14 @@
 (define-public zile
   (package
     (name "zile")
-    (version "2.4.11")
+    (version "2.4.13")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnu/zile/zile-"
                                  version ".tar.gz"))
              (sha256
               (base32
-               "1k593y1xzvlj52q0gyhcx2lllws4sg84b8r9pcginjb1vjypplhz"))))
+               "03mcg0bxkzprlsx8y6h22w924pzx4a9zr7zm3g11j8j3x9lz75f7"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases (alist-cons-before
@@ -59,7 +59,7 @@
      `(("perl" ,perl)
        ("help2man" ,help2man)
        ("pkg-config" ,pkg-config)))
-    (home-page "http://www.gnu.org/software/zile/")
+    (home-page "https://www.gnu.org/software/zile/")
     (synopsis "Lightweight Emacs clone")
     (description
      "GNU Zile is a lightweight Emacs clone.  It usage is similar to the
-- 
cgit v1.2.3


From c11933c920dd7b7cdf68e13e6b3718602129210a Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 19 Oct 2016 17:08:35 +0300
Subject: gnu: zile: Use 'modify-phases' syntax.

* gnu/packages/zile.scm (zile)[arguments]: Use 'modify-phases' syntax.
---
 gnu/packages/zile.scm | 20 +++++++++++---------
 1 file changed, 11 insertions(+), 9 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/zile.scm b/gnu/packages/zile.scm
index 88aaf75c50..13a5440eea 100644
--- a/gnu/packages/zile.scm
+++ b/gnu/packages/zile.scm
@@ -1,6 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2012, 2013 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -42,15 +43,16 @@
                "03mcg0bxkzprlsx8y6h22w924pzx4a9zr7zm3g11j8j3x9lz75f7"))))
     (build-system gnu-build-system)
     (arguments
-     '(#:phases (alist-cons-before
-                 'configure 'patch-/bin/sh
-                 (lambda* (#:key inputs #:allow-other-keys)
-                   (let ((bash (assoc-ref inputs "bash")))
-                     ;; Refer to the actual shell.
-                     (substitute* '("lib/spawni.c" "src/funcs.c")
-                       (("/bin/sh")
-                        (string-append bash "/bin/sh")))))
-                 %standard-phases)))
+     '(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'patch-/bin/sh
+           (lambda* (#:key inputs #:allow-other-keys)
+             (let ((bash (assoc-ref inputs "bash")))
+               ;; Refer to the actual shell.
+               (substitute* '("lib/spawni.c" "src/funcs.c")
+                 (("/bin/sh")
+                  (string-append bash "/bin/sh")))
+               #t))))))
     (inputs
      `(("boehm-gc" ,libgc)
        ("ncurses" ,ncurses)
-- 
cgit v1.2.3


From 71f048c624d4ff48210572e43d6b15b9acec5e9f Mon Sep 17 00:00:00 2001
From: ng0 <ng0@we.make.ritual.n0.is>
Date: Tue, 6 Sep 2016 17:10:18 +0000
Subject: gnu: Add libasr.

* gnu/packages/dns.scm (libasr): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
---
 gnu/packages/dns.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/dns.scm b/gnu/packages/dns.scm
index 3e79e57adb..e15ebed887 100644
--- a/gnu/packages/dns.scm
+++ b/gnu/packages/dns.scm
@@ -4,6 +4,7 @@
 ;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 John Darrington <jmd@gnu.org>
+;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -21,9 +22,12 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages dns)
+  #:use-module (gnu packages autotools)
   #:use-module (gnu packages databases)
+  #:use-module (gnu packages groff)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages perl)
+  #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages xml)
   #:use-module ((guix licenses) #:prefix license:)
@@ -128,3 +132,32 @@ high-volume and high-reliability applications. The name BIND stands for
     (home-page "https://www.isc.org/downloads/bind")
     (license (list license:isc))))
 
+(define-public libasr
+  (package
+    (name "libasr")
+    (version "201602131606")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://www.opensmtpd.org/archives/"
+                           name "-" version ".tar.gz"))
+       (sha256
+        (base32
+         "18kdmbjsxrfai16d66qslp48b1zf7gr8him2jj5dcqgbsl44ls75"))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("autoconf" ,autoconf)
+       ("automake" ,automake)
+       ("pkg-config" ,pkg-config)
+       ("groff" ,groff)))
+    (home-page "https://www.opensmtpd.org")
+    (synopsis "Asynchronous resolver library by the OpenBSD project")
+    (description
+     "libasr is a free, simple and portable asynchronous resolver library.
+It allows to run DNS queries and perform hostname resolutions in a fully
+asynchronous fashion.")
+    (license (list license:isc
+                   license:bsd-2 ; last part of getrrsetbyname_async.c
+                   license:bsd-3
+                   (license:non-copyleft "file://LICENSE") ; includes.h
+                   license:openssl))))
-- 
cgit v1.2.3


From 8b53366c63de004c6185015edb7bcf1e6744713a Mon Sep 17 00:00:00 2001
From: ng0 <ng0@we.make.ritual.n0.is>
Date: Tue, 6 Sep 2016 18:23:15 +0000
Subject: gnu: Add opensmtpd.

* gnu/packages/mail.scm (opensmtpd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
---
 gnu/packages/mail.scm | 54 ++++++++++++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 53 insertions(+), 1 deletion(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 47c15497d4..33ee2cdc37 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -46,6 +46,7 @@
   #:use-module (gnu packages cyrus-sasl)
   #:use-module (gnu packages databases)
   #:use-module (gnu packages dejagnu)
+  #:use-module (gnu packages dns)
   #:use-module (gnu packages emacs)
   #:use-module (gnu packages enchant)
   #:use-module (gnu packages ghostscript)
@@ -57,6 +58,7 @@
   #:use-module (gnu packages guile)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages libcanberra)
+  #:use-module (gnu packages libevent)
   #:use-module (gnu packages libidn)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages m4)
@@ -81,7 +83,8 @@
   #:use-module ((guix licenses)
                 #:select (gpl2 gpl2+ gpl3 gpl3+ lgpl2.1 lgpl2.1+ lgpl3+
                            non-copyleft (expat . license:expat) bsd-3
-                           public-domain))
+                           public-domain bsd-4 isc (openssl . license:openssl)
+                           bsd-2))
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix git-download)
@@ -1541,3 +1544,52 @@ transfer protocols.")
     (license (non-copyleft "file://LICENSE"
                            "See LICENSE in the distribution."))))
 
+(define-public opensmtpd
+  (package
+    (name "opensmtpd")
+    (version "5.9.2p1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://www.opensmtpd.org/archives/"
+                                  name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "07d7f1m5sxyz6mkk228rcm7fsf7350994ayvmhgph333q5rz48im"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("bdb" ,bdb)
+       ("libressl" ,libressl)
+       ("libevent" ,libevent)
+       ("libasr" ,libasr)
+       ("linux-pam" ,linux-pam)
+       ("zlib" ,zlib)))
+    (native-inputs
+     `(("bison" ,bison)))
+    (arguments
+     `(#:configure-flags (list "--with-table-db" "--localstatedir=/var"
+                               "--with-user-smtpd=smtpd" "--with-user-queue=smtpq"
+                               "--with-group-queue=smtpq")
+       #:phases
+       (modify-phases %standard-phases
+         ;; OpenSMTPD provides a single utility smtpctl to control the daemon and
+         ;; the local submission subsystem.  To accomodate systems that require
+         ;; historical interfaces such as sendmail, newaliases or makemap, the
+         ;; smtpctl utility can operate in compatibility mode if called with the
+         ;; historical name.
+         (add-after 'install 'install-compabilitymode
+           (lambda _
+             (let* ((out (assoc-ref %outputs "out"))
+                    (sbin (string-append out "/sbin/")))
+               (for-each (lambda (cmd)
+                           (symlink "smtpctl" (string-append sbin cmd)))
+                         '("makemap" "sendmail" "send-mail"
+                           "newaliases" "mailq")))
+             #t)))))
+    (synopsis "Lightweight SMTP daemon")
+    (description
+     "OpenSMTPD is an implementation of the server-side SMTP protocol, with
+some additional standard extensions.  It allows ordinary machines to exchange
+e-mails with other systems speaking the SMTP protocol.")
+    (home-page "https://www.opensmtpd.org")
+    (license (list bsd-2 bsd-3 bsd-4 (non-copyleft "file://COPYING")
+                   public-domain isc openssl))))
-- 
cgit v1.2.3


From 152ffe7cb6ba02915d8645102e0f6dfeb639090d Mon Sep 17 00:00:00 2001
From: ng0 <ng0@we.make.ritual.n0.is>
Date: Tue, 6 Sep 2016 20:12:00 +0000
Subject: gnu: Add opensmtpd-extras.

* gnu/packages/mail.scm (opensmtpd-extras): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
---
 gnu/packages/mail.scm | 71 +++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 71 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 33ee2cdc37..0be0929e92 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -53,6 +53,7 @@
   #:use-module (gnu packages glib)
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages gnupg)
+  #:use-module (gnu packages groff)
   #:use-module (gnu packages gsasl)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages guile)
@@ -61,6 +62,7 @@
   #:use-module (gnu packages libevent)
   #:use-module (gnu packages libidn)
   #:use-module (gnu packages linux)
+  #:use-module (gnu packages lua)
   #:use-module (gnu packages m4)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages pcre)
@@ -1593,3 +1595,72 @@ e-mails with other systems speaking the SMTP protocol.")
     (home-page "https://www.opensmtpd.org")
     (license (list bsd-2 bsd-3 bsd-4 (non-copyleft "file://COPYING")
                    public-domain isc openssl))))
+
+(define-public opensmtpd-extras
+  (package
+    (name "opensmtpd-extras")
+    (version "5.7.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://www.opensmtpd.org/archives/"
+                                  name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1kld4hxgz792s0cb2gl7m2n618ikzqkj88w5dhaxdrxg4x2c4vdm"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("libressl" ,libressl)
+       ("libevent" ,libevent)
+       ("libasr" ,libasr)
+       ("python-2" ,python-2)
+       ("opensmtpd" ,opensmtpd)
+       ("perl" ,perl)
+       ("lua" ,lua)
+       ("postgresql" ,postgresql)
+       ("sqlite" ,sqlite)
+       ("linux-pam" ,linux-pam)))
+    (native-inputs
+     `(("bison" ,bison)
+       ("pkg-config" ,pkg-config)
+       ("groff" ,groff)
+       ("automake" ,automake)
+       ("autoconf" ,autoconf)))
+    (arguments
+     `(;; We have to configure it like this because the default checks for for example
+       ;; python in /usr/local/bin, /usr/bin and fails otherwise.
+       #:configure-flags (list
+                          "--with-filter-clamav"    "--with-filter-dkim-signer"
+                          "--with-filter-dnsbl"     "--with-filter-lua"
+                          "--with-filter-monkey"    "--with-filter-pause"
+                          "--with-filter-perl"      "--with-filter-python"
+                          "--with-filter-regex"     "--with-filter-spamassassin"
+                          "--with-filter-stub"      "--with-filter-trace"
+                          "--with-filter-void"
+
+                          "--with-queue-null"       "--with-queue-python"
+                          "--with-queue-ram"        "--with-queue-stub"
+
+                          "--with-scheduler-python" "--with-scheduler-ram"
+                          "--with-scheduler-stub"
+
+                          "--with-table-ldap"       ; "--with-table-mysql"
+                          "--with-table-passwd"     "--with-table-postgres"
+                          "--with-table-python"     "--with-table-socketmap"
+                          "--with-table-sqlite"     "--with-table-stub"
+                          ;;"--with-table-redis"    ; TODO: package hiredis
+
+                          "--with-user=smtpd"       "--with-privsep-user=smtpd"
+                          "--localstatedir=/var"    "--sysconfdir=/etc"
+                          "--with-lua-type=lua"     ; can use lua or luajit
+
+                          (string-append "--with-python="
+                                         (assoc-ref %build-inputs "python-2"))
+                          (string-append "--with-lua="
+                                         (assoc-ref %build-inputs "lua")))))
+    (license (list bsd-2 bsd-3 bsd-4 non-copyleft
+                   public-domain isc openssl))
+    (synopsis "Extra tables, filters, and various other addons for OpenSMTPD")
+    (description
+     "This package provides extra tables, filters, and various other addons
+for OpenSMTPD to extend its functionality.")
+    (home-page "https://www.opensmtpd.org")))
-- 
cgit v1.2.3