From 87aa4d6245da084abc23f4836e8736815c6ff5bf Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 6 Mar 2020 12:14:26 +0100 Subject: gnu: r-ggplot2: Update to 3.3.0. * gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.0. [propagated-inputs]: Remove r-lazyeval, r-reshape2, and r-viridislite; add r-glue and r-isoband. --- gnu/packages/statistics.scm | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 81956c85e2..cc335d9126 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1088,26 +1088,25 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.2.1") + (version "3.3.0") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "0mjswqiqcwm0aqxll16bx2kwa6c9km3aql87bdj4347n1ali94g3")))) + (base32 "0j21am605kqqzlwhm45kaj0m2irnmy2vz0j7kzi9f0qdzrv3q3ij")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) + ("r-glue" ,r-glue) ("r-gtable" ,r-gtable) - ("r-lazyeval" ,r-lazyeval) + ("r-isoband" ,r-isoband) ("r-mass" ,r-mass) ("r-mgcv" ,r-mgcv) ("r-tibble" ,r-tibble) - ("r-reshape2" ,r-reshape2) ("r-rlang" ,r-rlang) ("r-scales" ,r-scales) ("r-svglite" ,r-svglite) ; Needed for 'ggsave' - ("r-viridislite" ,r-viridislite) ("r-withr" ,r-withr))) (home-page "https://ggplot2.tidyverse.org") (synopsis "An implementation of the grammar of graphics") -- cgit v1.2.3 From dd386dd74fab86e7177876f0f24e2891b83736d0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 6 Mar 2020 12:14:59 +0100 Subject: gnu: r-modeltools: Update to 0.2-23. * gnu/packages/statistics.scm (r-modeltools): Update to 0.2-23. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index cc335d9126..cdf080fe4f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4637,14 +4637,14 @@ original public code has been corrected.") (define-public r-modeltools (package (name "r-modeltools") - (version "0.2-22") + (version "0.2-23") (source (origin (method url-fetch) (uri (cran-uri "modeltools" version)) (sha256 (base32 - "1s9lmkac3rl0nknf4wizfhg7ryq7c8yvvyc4z619238br27hhsi5")))) + "1vqh69256h344sbj5affm0kmc77dakrxp6442xfdnfd0y5d8sgkb")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/modeltools") (synopsis "Tools and classes for statistical models") -- cgit v1.2.3 From 56bf00b94e98b506aaaf5c985573e1ff4326d5db Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 7 Mar 2020 19:29:29 +0100 Subject: gnu: r-viridis: Add r-knitr. * gnu/packages/statistics.scm (r-viridis)[native-inputs]: Add r-knitr. --- gnu/packages/statistics.scm | 2 ++ 1 file changed, 2 insertions(+) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index cdf080fe4f..1b9ce60efe 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3607,6 +3607,8 @@ memory usage.") `(("r-ggplot2" ,r-ggplot2) ("r-gridextra" ,r-gridextra) ("r-viridislite" ,r-viridislite))) + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes (home-page "https://github.com/sjmgarnier/viridis") (synopsis "Matplotlib default color map") (description -- cgit v1.2.3 From 667f799641a8cfcfb9efed0171a7095ecf49e5b9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 7 Mar 2020 20:03:43 +0100 Subject: gnu: r-survival: Update to 3.1-11. * gnu/packages/statistics.scm (r-survival): Update to 3.1-11. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 1b9ce60efe..0a5a7f1f67 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -693,14 +693,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "3.1-8") + (version "3.1-11") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "15fj4y8c107bwq22amx88r5hw7qndlcbr9sapzrpkpr7iqz3kkyf")))) + "1fbhbm3bnpg1nmj37h1d76x813ggvwk0cp51ixmmgb3pz47i5xj4")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) -- cgit v1.2.3 From 1c9e3e9f36621bb91d153bc155c6cbce704e9220 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 7 Mar 2020 20:03:55 +0100 Subject: gnu: r-dplyr: Update to 0.8.5. * gnu/packages/statistics.scm (r-dplyr): Update to 0.8.5. [native-inputs]: Add r-knitr. --- gnu/packages/statistics.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 0a5a7f1f67..5178100ecc 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1650,13 +1650,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "0.8.4") + (version "0.8.5") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "1nd0mmvqjbzbknawa520f64p9zlj9lwdlq0hh7c1mciyy7ah6641")))) + "0602b4a9nffxx67q57csqp87nkrv33nn9wlaw1458yys9fzx6l2p")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -1671,6 +1671,8 @@ and printing capabilities than traditional data frames.") ("r-rlang" ,r-rlang) ("r-tibble" ,r-tibble) ("r-tidyselect" ,r-tidyselect))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/hadley/dplyr") (synopsis "Tools for working with data frames in R") (description -- cgit v1.2.3 From c32897b6e409c94fca4102f68d80db95e60c5f37 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 8 Mar 2020 15:57:54 +0100 Subject: gnu: r-robust: Update to 0.5-0.0. * gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 5178100ecc..12d8a20766 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4856,14 +4856,14 @@ generally.") (define-public r-robust (package (name "r-robust") - (version "0.4-18.2") + (version "0.5-0.0") (source (origin (method url-fetch) (uri (cran-uri "robust" version)) (sha256 (base32 - "02x7d6dgx3skiadvx5m3c44b4bhz37ycpfhc25dhhv50y1db6l3k")))) + "1ks5scp8bnicl9j1r8yrmz668fjs6ifdmi540zw6d2ck500bbw42")))) (build-system r-build-system) (propagated-inputs `(("r-fit-models" ,r-fit-models) -- cgit v1.2.3 From b6574660e3cbbeb88bd38c10ca9e0d069f51706f Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Sun, 8 Mar 2020 23:16:34 +0100 Subject: gnu: Update python-statsmodels to 0.11.1. * gnu/packages/statistics.scm (python-statsmodels): Update to 0.11.1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 12d8a20766..13d64be498 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1880,14 +1880,14 @@ building design matrices.") (define-public python-statsmodels (package (name "python-statsmodels") - (version "0.9.0") + (version "0.11.1") (source (origin (method url-fetch) (uri (pypi-uri "statsmodels" version)) (sha256 (base32 - "0fxs8a7sp4d7jvqlm36yi45i2d28kjfvraf9q8i9jr1chhxgjqb4")))) + "1w6mf8b86vizi2895j11szqryr2v1ckjig3wp9fv94aslfh3zpjv")))) (build-system python-build-system) (arguments `(;; The test suite is very large and rather brittle. Tests often fail -- cgit v1.2.3 From 88c6a1812c76947fae7ddc27c224264d71dc4639 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sat, 18 Jan 2020 21:34:53 +0100 Subject: gnu: Use HTTPS for rstudio.github.io home pages. * gnu/packages/cran.scm (r-shinydashboard, r-shinythemes, r-dt) [home-page]: Use HTTPS. --- gnu/packages/cran.scm | 4 ++-- gnu/packages/statistics.scm | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 05aa746f29..6437fd46b8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -977,7 +977,7 @@ supports interactive trees, to enable rich, editable trees in Shiny.") ("r-shiny" ,r-shiny))) (native-inputs `(("uglify-js" ,uglify-js))) - (home-page "http://rstudio.github.io/shinydashboard/") + (home-page "https://rstudio.github.io/shinydashboard/") (synopsis "Create dashboards with shiny") (description "This package provides an extension to the Shiny web application framework for R, making it easy to create attractive dashboards.") @@ -1028,7 +1028,7 @@ well as file saving is available.") (properties `((upstream-name . "shinythemes"))) (build-system r-build-system) (propagated-inputs `(("r-shiny" ,r-shiny))) - (home-page "http://rstudio.github.io/shinythemes/") + (home-page "https://rstudio.github.io/shinythemes/") (synopsis "Themes for Shiny") (description "This package provides themes for use with Shiny. It includes several diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 13d64be498..5e614d74e1 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3151,7 +3151,7 @@ using the multicore functionality of the parallel package.") ("r-jsonlite" ,r-jsonlite) ("r-magrittr" ,r-magrittr) ("r-promises" ,r-promises))) - (home-page "http://rstudio.github.io/DT") + (home-page "https://rstudio.github.io/DT") (synopsis "R wrapper of the DataTables JavaScript library") (description "This package allows for data objects in R to be rendered as HTML tables -- cgit v1.2.3 From 3a18b1cc2ecc03b661a86214ba99440fd3296b19 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sat, 18 Jan 2020 19:53:05 +0100 Subject: gnu: r-knitr: Update home page. * gnu/packages/statistics.scm (r-knitr)[home-page]: Follow (HTTPS) redirection. --- gnu/packages/statistics.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 5e614d74e1..cd6b754425 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1414,7 +1414,7 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.") ("r-stringr" ,r-stringr) ("r-xfun" ,r-xfun) ("r-yaml" ,r-yaml))) - (home-page "http://yihui.name/knitr/") + (home-page "https://yihui.org/knitr/") (synopsis "General-purpose package for dynamic report generation in R") (description "This package provides a general-purpose tool for dynamic report -- cgit v1.2.3 From 369e4e966092395d0e03e56710fa78eaf71a5ef5 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sat, 18 Jan 2020 21:03:20 +0100 Subject: gnu: r-spams: Use HTTPS home page. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Well, it currently redirects back to HTTP… * gnu/packages/statistics.scm (r-spams)[home-page]: Use ‘HTTPS’. --- gnu/packages/statistics.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index cd6b754425..547450c78b 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3922,7 +3922,7 @@ from within R.") (propagated-inputs `(("r-lattice" ,r-lattice) ("r-matrix" ,r-matrix))) - (home-page "http://spams-devel.gforge.inria.fr") + (home-page "https://spams-devel.gforge.inria.fr") (synopsis "Toolbox for solving sparse estimation problems") (description "SPAMS (SPArse Modeling Software) is an optimization toolbox for solving various sparse estimation problems. It includes tools for the -- cgit v1.2.3