From 81a37891ec8ac11e4fac5e153498a802ea1fd526 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 1 Apr 2020 11:13:24 +0200 Subject: gnu: r-genomicinteractions: Update to 1.20.2. * gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.2. [native-inputs]: Add r-knitr. --- gnu/packages/bioconductor.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioconductor.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 28522e7c13..8a7b21f5f4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1958,14 +1958,14 @@ experiments.") (define-public r-genomicinteractions (package (name "r-genomicinteractions") - (version "1.20.1") + (version "1.20.2") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomicInteractions" version)) (sha256 (base32 - "140bp7c8p079xh5wwxmrq3a73pm6mdc9czq5w2gzjml7dgrca38a")))) + "0mqb899wah5n7bp2lajhwy2zpqqhi18plza3i3m51rfl9n62smph")))) (properties `((upstream-name . "GenomicInteractions"))) (build-system r-build-system) @@ -1986,6 +1986,8 @@ experiments.") ("r-rtracklayer" ,r-rtracklayer) ("r-s4vectors" ,r-s4vectors) ("r-stringr" ,r-stringr))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/ComputationalRegulatoryGenomicsICL/GenomicInteractions/") (synopsis "R package for handling genomic interaction data") (description -- cgit v1.2.3 From 028fd6f7863e3a32568f1e449def312122d763f1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 1 Apr 2020 11:13:42 +0200 Subject: gnu: r-gofuncr: Update to 1.6.1. * gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.1. [native-inputs]: Add r-knitr. --- gnu/packages/bioconductor.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioconductor.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 8a7b21f5f4..75aa36d0f5 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4079,14 +4079,14 @@ footprints.") (define-public r-gofuncr (package (name "r-gofuncr") - (version "1.6.0") + (version "1.6.1") (source (origin (method url-fetch) (uri (bioconductor-uri "GOfuncR" version)) (sha256 (base32 - "0hmi13pz923fm95asys615rih63b1i2nvynfczr1zcsc9fzn4h35")))) + "1wk7ja6f5il8jx8v05ijzcs9pijp3b953h566ya66xp7dz5jg9rb")))) (properties `((upstream-name . "GOfuncR"))) (build-system r-build-system) (propagated-inputs @@ -4097,6 +4097,8 @@ footprints.") ("r-mapplots" ,r-mapplots) ("r-rcpp" ,r-rcpp) ("r-vioplot" ,r-vioplot))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://bioconductor.org/packages/GOfuncR/") (synopsis "Gene ontology enrichment using FUNC") (description -- cgit v1.2.3 From d49e3f019028c9dba3f490dbc7bee4dcd961725d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 1 Apr 2020 11:13:58 +0200 Subject: gnu: r-cytoml: Update to 1.12.1. * gnu/packages/bioconductor.scm (r-cytoml): Update to 1.12.1. [native-inputs]: Add r-knitr. --- gnu/packages/bioconductor.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioconductor.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 75aa36d0f5..54384f9bc4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5833,14 +5833,14 @@ sequential way to mimic the manual gating strategy.") (define-public r-cytoml (package (name "r-cytoml") - (version "1.12.0") + (version "1.12.1") (source (origin (method url-fetch) (uri (bioconductor-uri "CytoML" version)) (sha256 (base32 - "0m8x18wkvis85cawv7j07pk59w76wnzy93ia99gd24j82z4h97p1")))) + "0wgi8rwb4spxzd5xvs5amfr5g82ny2nad57j3nmhnhnj1cpirjxz")))) (properties `((upstream-name . "CytoML"))) (build-system r-build-system) (inputs @@ -5870,6 +5870,8 @@ sequential way to mimic the manual gating strategy.") ("r-runit" ,r-runit) ("r-xml" ,r-xml) ("r-yaml" ,r-yaml))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/RGLab/CytoML") (synopsis "GatingML interface for cross platform cytometry data sharing") (description -- cgit v1.2.3 From 9669bc170ae1488683f41879250090987d1d9e3c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 1 Apr 2020 11:14:18 +0200 Subject: gnu: r-mixomics: Update to 6.10.9. * gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.9. [native-inputs]: Add r-knitr. --- gnu/packages/bioconductor.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioconductor.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 54384f9bc4..91e44464ae 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5912,14 +5912,14 @@ self-organizing map clustering and minimal spanning trees.") (define-public r-mixomics (package (name "r-mixomics") - (version "6.10.8") + (version "6.10.9") (source (origin (method url-fetch) (uri (bioconductor-uri "mixOmics" version)) (sha256 (base32 - "0307vhx9ck24rxqbvq15815ssxcc226sl2la060n204b51wi9jaa")))) + "0b457yg8mwqlrn5l344w8qcj8v2ghlj1wdx1ysxbncqvqx7nvgig")))) (properties `((upstream-name . "mixOmics"))) (build-system r-build-system) (propagated-inputs @@ -5936,6 +5936,8 @@ self-organizing map clustering and minimal spanning trees.") ("r-rcolorbrewer" ,r-rcolorbrewer) ("r-reshape2" ,r-reshape2) ("r-tidyr" ,r-tidyr))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "http://www.mixOmics.org") (synopsis "Multivariate methods for exploration of biological datasets") (description -- cgit v1.2.3 From 4ecba23091b29a7cdb06d4b5be9436609b7da4ca Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 1 Apr 2020 11:14:34 +0200 Subject: gnu: r-biocworkflowtools: Update to 1.12.1. * gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.12.1. [native-inputs]: Add r-knitr. --- gnu/packages/bioconductor.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioconductor.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 91e44464ae..2fbfdba2d8 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7498,14 +7498,14 @@ accessing web references for elements/sets are also available in BiocSet.") (define-public r-biocworkflowtools (package (name "r-biocworkflowtools") - (version "1.12.0") + (version "1.12.1") (source (origin (method url-fetch) (uri (bioconductor-uri "BiocWorkflowTools" version)) (sha256 (base32 - "1v4bhnpdkmllm7aghms9b7369hkrgz7mn69wbrqg1x42pgkf30ad")))) + "0z28s572wg9qxv52dmixxz1xf1z3fyp2j7kzk0k32fp628918wr6")))) (properties `((upstream-name . "BiocWorkflowTools"))) (build-system r-build-system) @@ -7519,6 +7519,8 @@ accessing web references for elements/sets are also available in BiocSet.") ("r-rstudioapi" ,r-rstudioapi) ("r-stringr" ,r-stringr) ("r-usethis" ,r-usethis))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://bioconductor.org/packages/BiocWorkflowTools/") (synopsis "Tools to aid the development of Bioconductor Workflow packages") (description -- cgit v1.2.3