From 5713bbf157a8e82fbb194519ce3d611de8db075d Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 20 Oct 2017 02:39:56 +0200 Subject: Use HTTPS for bioconductor.org. * doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for bioconductor.org URLs. * gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter) (r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category) (r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews) (r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata) (r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi) (r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray) (r-summarizedexperiment, r-genomicalignments, r-rtracklayer) (r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern) (r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport) (r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid) (r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene) (r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db) (r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db) (r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9) (r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene) (r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10) (r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]: Likewise. * gnu/packages/statistics.scm (r-rcurl)[source]: Likewise. * guix/build-system/r.scm (bioconductor-uri): Likewise. * guix/import/cran.scm (%cran-url, bioconductor-package?) (bioconductor-data-package?, bioconductor-experiment-package?): Likewise. --- doc/guix.texi | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'doc') diff --git a/doc/guix.texi b/doc/guix.texi index b7f4f88f92..753d3c4827 100644 --- a/doc/guix.texi +++ b/doc/guix.texi @@ -5881,7 +5881,7 @@ dependency graph of the given upstream package recursively and generate package expressions for all those packages that are not yet in Guix. When @code{--archive=bioconductor} is added, metadata is imported from -@uref{http://www.bioconductor.org/, Bioconductor}, a repository of R +@uref{https://www.bioconductor.org/, Bioconductor}, a repository of R packages for for the analysis and comprehension of high-throughput genomic data in bioinformatics. @@ -6236,7 +6236,7 @@ the updater for @uref{http://elpa.gnu.org/, ELPA} packages; @item cran the updater for @uref{http://cran.r-project.org/, CRAN} packages; @item bioconductor -the updater for @uref{http://www.bioconductor.org/, Bioconductor} R packages; +the updater for @uref{https://www.bioconductor.org/, Bioconductor} R packages; @item cpan the updater for @uref{http://www.cpan.org/, CPAN} packages; @item pypi -- cgit v1.2.3