From 9602e3cce95264d563804d372f44a0d88bad3e9f Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Sat, 8 Oct 2016 21:33:43 +1000 Subject: gnu: python2-dendropy: Fix tests. * gnu/packages/bioinformatics.scm (python2-dendropy)[source]: Use unpatched source. [arguments]: Use nose to run tests. [native-inputs]: Add python2-nose. --- gnu/packages/bioinformatics.scm | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 76e6c310ef..02ed8daac7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1972,7 +1972,25 @@ trees (phylogenies) and characters.") (let ((base (package-with-python2 (strip-python2-variant python-dendropy)))) (package (inherit base) + ;; Do not use same source as 'python-dendropy' because the patched + ;; failing tests do not occur on Python 2. + (source + (origin + (method url-fetch) + (uri (pypi-uri "DendroPy" (package-version base))) + (sha256 + (base32 + "1jfz7gp18wph311w1yygbvjanb3n5mdqal439bb6myw41dwb5m63")))) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (replace 'check + ;; There is currently a test failure that only happens on some + ;; systems, and only using "setup.py test" + (lambda _ (zero? (system* "nosetests"))))))) (native-inputs `(("python2-setuptools" ,python2-setuptools) + ("python2-nose" ,python2-nose) ,@(package-native-inputs base)))))) -- cgit v1.2.3