From 17dc32a40033241500123ac2c1a19709820000a7 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 12 Jul 2016 12:19:39 +0200
Subject: gnu: Add Ribotaper.

* gnu/packages/bioinformatics.scm (ribotaper): New variable.
---
 gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 355b578623..f0a409d22f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -273,6 +273,36 @@ BED, GFF/GTF, VCF.")
                (base32
                 "05vrnr8yp7swfagshzpgqmzk1blnwnq8pq5pckzi1m26w98d63vf"))))))
 
+(define-public ribotaper
+  (package
+    (name "ribotaper")
+    (version "1.3.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://ohlerlab.mdc-berlin.de/"
+                                  "files/RiboTaper/RiboTaper_Version_"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "0ykjbps1y3z3085q94npw8i9x5gldc6shy8vlc08v76zljsm07hv"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("bedtools" ,bedtools-2.18)
+       ("samtools" ,samtools-0.1)
+       ("r" ,r)
+       ("r-foreach" ,r-foreach)
+       ("r-xnomial" ,r-xnomial)
+       ("r-domc" ,r-domc)
+       ("r-multitaper" ,r-multitaper)
+       ("r-seqinr" ,r-seqinr)))
+    (home-page "https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/")
+    (synopsis "Define translated ORFs using ribosome profiling data")
+    (description
+     "Ribotaper is a method for defining translated @dfn{open reading
+frames} (ORFs) using ribosome profiling (ribo-seq) data.  This package
+provides the Ribotaper pipeline.")
+    (license license:gpl3+)))
+
 (define-public bioawk
   (package
     (name "bioawk")
-- 
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