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| * services: cuirass: Allow passing extra command line options.•••This is so that the options supported by the service configuration don't have to always be changed. Generally though all options should be explicitly supported and documented, so this is mostly to facilitate experimentation. * gnu/services/cuirass.scm (<cuirass-configuration>): Add an extra-options field. (cuirass-shepherd-service): Pass the extra options to the shepherd servvices. * doc/guix.texi (Continuous Integration): Document it. Christopher Baines2020-03-08
| * services: guix-data-service: Allow passing extra options.•••This is so that the options supported by the service configuration don't have to always be changed. Generally though all options should be explicitly supported and documented, so this is mostly to facilitate experimentation. * gnu/services/guix.scm (<guix-data-service-configuration>): Add extra-options and extra-process-jobs-options to the record type. (guix-data-service-shepherd-services): Handle these new configuration record fields. * doc/guix.texi (Guix Data Service): Document these new options. Christopher Baines2020-03-08
| * gnu: guix-data-service: Update to 0.0.1-18.18eb9df.•••* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-18.18eb9df. (inputs, native-inputs): Switch to using the Guile 3 package variants where applicable. Christopher Baines2020-03-08
| * gnu: python-virtualenv: Update to 20.0.8.•••* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.8. [arguments]: Remove the now-redundant 'disable-failing-test phase. [native-inputs]: Add python-setuptools and python-setuptools-scm. [inputs]: Add python-{appdirs, distlib, filelock, six, importlib-metadata}. Jakub Kądziołka2020-03-09
| * gnu: python-xyz: Add python-filelock.•••* gnu/packages/python-xyz.scm (python-filelock): New variable. Jakub Kądziołka2020-03-09
| * gnu: python-xyz: Add python-distlib.•••* gnu/packages/python-xyz.scm (python-distlib): New variable. Jakub Kądziołka2020-03-09
| * gnu: ngless: Update to 1.1.0.•••* gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0. Ricardo Wurmus2020-03-08
| * gnu: Add jack-select.•••* gnu/packages/music.scm (jack-select): New variable. Ricardo Wurmus2020-03-08
| * gnu: taxtastic: Update to 0.8.11.•••* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11. [source]: Fetch from Github. [arguments]: Build with default Python; add phases 'prepare-directory, 'python37-compatibility, and update 'check phase. [propagated-inputs]: Replace Python 2 variants with Python 3 variants. Ricardo Wurmus2020-03-08
| * gnu: guile-next: Revert to 3.0.0.•••Guile 3.0.1 segfaults while building guix-system-tests.drv on and "guile3.0-guix" on x86_64-linux. * gnu/packages/guile.scm (guile-next): Revert to 3.0.0. (guile-3.0): Ludovic Courtès2020-03-08
| * gnu: Add perl-config-inifiles.•••* gnu/packages/perl.scm (perl-config-inifiles): New variable. Roel Janssen2020-03-08
| * gnu: Add perl-attribute-util.•••* gnu/packages/perl.scm (perl-attribute-util): New variable. Roel Janssen2020-03-08
| * gnu: Add font-opendyslexic.•••* gnu/packages/fonts.scm (font-opendyslexic): New variable. (font-open-dyslexic): Mark as deprecated package. Efraim Flashner2020-03-08
| * gnu: beep: Remove dependency on GCC 8.•••* gnu/packages/terminals.scm (beep)[native-inputs]: Remove. Ludovic Courtès2020-03-08
| * gnu: beep: Update to 1.4.9.•••* gnu/packages/terminals.scm (beep): Update to 1.4.9. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vincent Legoll2020-03-08
| * services: certbot: Add server option.•••* gnu/services/certbot.scm (certbot-configuration): Add server option. (certbot-command): Use server option. (certbot-actication): Use server option. (certbot-nginx-server-configurations): Use server option. * doc/guix.texi (Certificate Services): Document server option. Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jack Hill2020-03-08
| * system: Export 'operating-system' missing fields.•••* gnu/system.scm: Export 'operating-system-firmware', 'operating-system-keyboard-layout', 'operating-system-name-service-switch', 'operating-system-pam-services', 'operating-system-setuid-programs', 'operating-system-skeletons', 'operating-system-sudoers-file', 'operating-system-swap-devices'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brice Waegeneire2020-03-08
| * gnu: guile-next: Update to 3.0.1.•••* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1. Use "mirror://" URL. Ludovic Courtès2020-03-08
| * gnu: r-robust: Update to 0.5-0.0.•••* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0. base-for-series-3110Ricardo Wurmus2020-03-08
| * gnu: r-rapidjsonr: Update to 1.2.0.•••* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0. Ricardo Wurmus2020-03-08
| * gnu: r-atacseqqc: Update to 1.10.3.•••* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-08
| * gnu: Reword and extend descriptions for some KDE packages.•••* gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend. * gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter, kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime, kontactinterface, kpimtextedit)[description]: Reword and extend. (ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend. (kmailtransport)[synopsis]: Fix space. * gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend. Hartmut Goebel2020-03-08
| * gnu: Add emacs-org-journal.•••* gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable. Martin Becze2020-03-08
| * gnu: python-umap-learn: Fix build.•••* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to run the test suite. Roel Janssen2020-03-08
| * services: nfs: Run rpc.mountd in foreground.•••Fixes <https://bugs.gnu.org/39708>. Shepherd doesn't keep track of processes that fork themselves and would disable the process after restarting it a couple times. * gnu/services/nfs.scm (nfs-shepherd-services): Invoke rpc.mountd with the '--foreground' option. Maxim Cournoyer2020-03-08
| * gnu: QEMU: Fix CVE-2020-8608.•••* gnu/packages/patches/qemu-CVE-2020-8608.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/virtualization.scm (qemu)[source]: Use it. Leo Famulari2020-03-07
| * gnu: brotli: Remove package•••Same package is provided by google-brotli. * gnu/packages/compression.scm (brotli): Redefine as a deprecated alias for "google-brotli". Co-authored-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun2020-03-07
| * gnu: woff2: Update to 1.0.2•••* gnu/packages/fontutils.scm (woff2): Update to 1.0.2 and switch to cmake * gnu/packages/patches/woff2-libbrotli.patch: Remove * gnu/local.mk (dist_patch_DATA): Remove patch Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun2020-03-07
| * gnu: ccache: Fix indentation•••* gnu/packages/ccache.scm (ccache): Fix indentation Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vincent Legoll2020-03-07
| * gnu: ccache: Update to 3.7.7.•••gnu/packages/ccache.scm (ccache): Update to 3.7.7, update homepage to ccache.dev, get source code from github, remove fortran 77 from description. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vincent Legoll2020-03-07
| * gnu: eudev: Add variant with corrected Btrfs rules.•••Discussed at <https://bugs.gnu.org/39926>. * gnu/packages/linux.scm (eudev/btrfs-fix): New variable. * gnu/services/base.scm (<udev-configuration>)[udev]: Default to it. (udev-service): Likewise for #:udev. Ludovic Courtès2020-03-07
| * gnu: guile: Add 2.2.7.•••* gnu/packages/guile.scm (guile-2.2.7): New variable. (guile-2.2/bug-fix): Redefine as a deprecated alias for GUILE-2.2.7. * gnu/packages/admin.scm (shepherd)[native-inputs, inputs]: Use GUILE-2.2.7. * gnu/packages/patches/guile-finalization-crash.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès2020-03-07
| * gnu: emacs-xr: Update to 1.17.•••* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.17. Nicolas Goaziou2020-03-07
| * gnu: emacs-relint: Update to 1.15.•••* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.15. Nicolas Goaziou2020-03-07
| * gnu: r-dplyr: Update to 0.8.5.•••* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.5. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-07
| * gnu: r-survival: Update to 3.1-11.•••* gnu/packages/statistics.scm (r-survival): Update to 3.1-11. Ricardo Wurmus2020-03-07
| * gnu: r-lifecycle: Update to 0.2.0.•••* gnu/packages/cran.scm (r-lifecycle): Update to 0.2.0. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-07
| * gnu: r-covr: Update to 3.5.0.•••* gnu/packages/cran.scm (r-covr): Update to 3.5.0. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-07
| * gnu: r-pscl: Update to 1.5.5.•••* gnu/packages/cran.scm (r-pscl): Update to 1.5.5. Ricardo Wurmus2020-03-07
| * gnu: r-mosaic: Add r-knitr.•••* gnu/packages/cran.scm (r-mosaic)[native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-07
| * gnu: r-insight: Update to 0.8.2.•••* gnu/packages/cran.scm (r-insight): Update to 0.8.2. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-07
| * gnu: r-heatmaply: Add r-knitr.•••* gnu/packages/cran.scm (r-heatmaply)[native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-07
| * gnu: r-methylkit: Add r-knitr.•••* gnu/packages/bioinformatics.scm (r-methylkit)[native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-07
| * gnu: r-ggrepel: Add r-knitr.•••* gnu/packages/cran.scm (r-ggrepel)[native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-07
| * gnu: r-multiassayexperiment: Update to 1.12.4.•••* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4. Ricardo Wurmus2020-03-07
| * gnu: r-depecher: Update to 1.2.2.•••* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-07
| * gnu: r-xcms: Update to 3.8.2.•••* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2. Ricardo Wurmus2020-03-07
| * gnu: r-yamss: Update to 1.12.1.•••* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1. Ricardo Wurmus2020-03-07
| * gnu: r-viridis: Add r-knitr.•••* gnu/packages/statistics.scm (r-viridis)[native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-07
| * gnu: r-vsn: Add r-knitr.•••* gnu/packages/bioinformatics.scm (r-vsn)[native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-07
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