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* gnu: Add dependency on Perl's 'Module::Build' as needed.•••'Module::Build' was deprecated in Perl 5.20 and removed in 5.22. Some packages need to explicitly depend on it now. * gnu/packages/perl.scm (perl-class-factory-util): (perl-date-manip, perl-devel-checkbin): Add 'native-inputs' field. (perl-module-build)[description]: Mention that it used to be in Perl. * gnu/packages/web.scm (perl-cgi-simple)[native-inputs]: Add PERL-MODULE-BUILD. Ludovic Courtès2016-01-17
* gnu: ffmpeg: Update to 2.8.5.•••* gnu/packages/video.scm (ffmpeg): Update to 2.8.5. Mark H Weaver2016-01-15
* gnu: librsvg: Update to 2.40.13 [fixes CVE-2015-7558].•••* gnu/packages/patches/librsvg-tests.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/gnome.scm (librsvg): Update to 2.40.13. [source]: Remove patch. Mark H Weaver2016-01-15
* gnu: automake: Adjust to deal with Perl 5.22.•••Fixes <http://bugs.gnu.org/22375>. * gnu/packages/patches/automake-regexp-syntax.patch: New file. * gnu/packages/autotools.scm (automake)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it. Ludovic Courtès2016-01-15
* gnu: gawk: Protect against random failures of the 'fts' test.•••* gnu/packages/patches/gawk-fts-test.patch: New file. * gnu/packages/gawk.scm (gawk)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it. Ludovic Courtès2016-01-14
* gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3.•••* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable building libstdc++-v3 and enable building C++ compiler. Ricardo Wurmus2016-01-13
* Merge branch 'master' into core-updatesLudovic Courtès2016-01-13
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| * gnu: julia: Update to 0.4.3.•••* gnu/packages/julia.scm (julia): Update to 0.4.3. (libuv-julia): Update to 07730c4bd595. Ricardo Wurmus2016-01-13
| * gnu: isc-dhcp: Update to 4.3.3-P1 [fixes CVE-2015-8605].•••* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3-P1. Mark H Weaver2016-01-13
| * gnu: samtools: Update to 1.3.•••* gnu/packages/bioinformatics.scm (samtools): Update to 1.3. [arguments]: Enable tests for all architectures; set ncurses in configure-flags instead of make-flags; simplify "patch-tests" phase; restore "configure" phase. Ricardo Wurmus2016-01-13
| * gnu: skribilo: Update to 0.9.3.•••* gnu/packages/skribilo.scm (skribilo): Update to 0.9.3. [native-inputs]: New field. Ludovic Courtès2016-01-13
| * gnu: boost: Update to 1.60.0.•••* gnu/packages/boost.scm (boost): Update to 1.60.0. [source]: Remove patch. * gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch * gnu-system.am (dist_patch_DATA): Remove patch. Also fix dependent packages: * gnu/packages/patches/csound-header-ordering.patch: New patch. * gnu/packages/audio.scm (csound)[source]: Use it. [arguments]: Add 'set-flags phase. * gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch. * gnu/packages/libreoffice.scm (libcmis)[source]: Use it. (libreoffice)[arguments]: Add LDFLAGS to #:configure-flags. (librevenge)[inputs]: Move boost from here... [propogated-inputs]: to here. [arguments]: Add LDFLAGS to #:configure-flags. * gnu/packages/patches/openimageio-boost-1.60.patch: New patch. * gnu/packages/graphics.scm (openimageio): Use it. * gnu-system.am (dist_patch_DATA): Add patches. Eric Bavier2016-01-12
| * gnu: boost: Use modify-phases.•••* gnu/packages/boost.scm (boost)[arguments]: Use modify-phases. Eric Bavier2016-01-12
| * gnu: sudo: Add fix for CVE-2015-5602.•••* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/admin.scm (sudo)[source]: Add patch. Mark H Weaver2016-01-12
| * gnu: global: Use modify-phases syntax.•••* gnu/packages/code.scm (global)[arguments]: Use modify-phases syntax. Efraim Flashner2016-01-12
| * gnu: global: Update to 6.5.2.•••* gnu/packages/code.scm (global): Update to 6.5.2. Efraim Flashner2016-01-12
| * gnu: icedtea-6: Fix directory name in "unpack" phase.•••* gnu/packages/java.scm (icedtea-6)[arguments]: Change the directory prefix in the "unpack" phase to "icedtea6-". Ricardo Wurmus2016-01-12
| * gnu: linux-libre: Update to 4.4.•••* gnu/packages/linux.scm (linux-libre): Update to 4.4. * gnu/packages/linux-libre-i686.conf, gnu/packages/linux-libre-x86_64.conf: Update from <https://jxself.org/git/kernel-configs.git>. Mark H Weaver2016-01-11
| * gnu: Add fxtract.•••* gnu/packages/bioinformatics.scm (fxtract): New variable. Ben Woodcroft2016-01-12
| * gnu: youtube-dl: Update to 2016.01.09.•••* gnu/packages/video.scm (youtube-dl): Update to 2016.01.09. Efraim Flashner2016-01-11
| * gnu: gp2c: Update to 0.0.9pl5.•••* gnu/packages/algebra.scm (gp2c): Update to 0.0.9pl5. Andreas Enge2016-01-11
| * gnu: texlive: Use modify-phases syntax.•••* gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Use modify-phases syntax. Andreas Enge2016-01-11
| * gnu: man-pages: Update to 4.04.•••* gnu/packages/man.scm (man-pages): Update to 4.04. [source]: Add alternate location. Efraim Flashner2016-01-11
| * gnu: bedtools: Update to 2.25.0.•••* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0. [source]: Remove patch merged upstream. [arguments]: Use 'modify-phases'. Remove 'patch-makefile-SHELL-definition' phase. * gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. Ben Woodcroft2016-01-11
| * gnu: bedtools: Use modify-phases.•••* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases. Ben Woodcroft2016-01-11
| * gnu: r: Update to 3.2.3.•••* gnu/packages/statistics.scm (r): Update to 3.2.3. Andreas Enge2016-01-09
| * gnu: icecat: Update to 38.5.2-gnu1.•••* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1. Andreas Enge2016-01-09
| * gnu: ruby-2.1: Update to 2.1.8.•••* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8. Ben Woodcroft2016-01-09
| * gnu: i2c-tools: Update source and home-page URLs.•••* gnu/packages/linux.scm (i2c-tools)[source]: Update URL. [home-page]: Update URL. Leo Famulari2016-01-08
| * gnu: lm-sensors: Update source and home-page URLs.•••* gnu/packages/linux.scm (lm-sensors)[source]: Update URL. [home-page]: Update URL. Leo Famulari2016-01-08
| * gnu: nss: Update to 3.21 [fixes CVE-2015-7575].•••* gnu/packages/gnuzilla.scm (nss): Update to 3.21. [arguments]: In configure phase, setenv CC=gcc. * gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21. Mark H Weaver2016-01-08
| * gnu: Add missing (gnu packages gcc) import.•••* gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is required by 'r-impute' for 'gfortran'. Mathieu Lirzin2016-01-08
| * gnu: xterm: Update to 322.•••* gnu/packages/xorg.scm (xterm): Update to 322. Mathieu Lirzin2016-01-08
| * gnu: epiphany: Update to 3.18.2.•••* gnu/packages/gnome.scm (epiphany): Update to 3.18.2. 宋文武2016-01-08
| * gnu: webkitgtk: Update to 2.10.4.•••* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4. 宋文武2016-01-08
| * gnu: Add Pfff.•••* gnu/packages/textutils.scm (pfff): New variable. Pjotr Prins2016-01-07
| * gnu: mpv: Remove 'samba' input.•••This is a heavy-weight and uncommon feature. See <http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html>. * gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'. Alex Kost2016-01-07
| * gnu: Add genomation.•••* gnu/packages/bioinformatics.scm (r-genomation): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add seqPattern.•••* gnu/packages/bioinformatics.scm (r-seqpattern): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add impute.•••* gnu/packages/bioinformatics.scm (r-impute): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add BSgenome.•••* gnu/packages/bioinformatics.scm (r-bsgenome): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add plotly.•••* gnu/packages/statistics.scm (r-plotly): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add viridis.•••* gnu/packages/statistics.scm (r-viridis): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add topGO.•••* gnu/packages/bioinformatics.scm (r-topgo): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add matrixStats.•••* gnu/packages/statistics.scm (r-matrixstats): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add R.rsp.•••* gnu/packages/statistics.scm (r-r-rsp): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add R.cache.•••* gnu/packages/statistics.scm (r-r-cache): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add R.utils.•••* gnu/packages/statistics.scm (r-r-utils): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add R.oo.•••* gnu/packages/statistics.scm (r-r-oo): New variable. Ricardo Wurmus2016-01-07
| * gnu: Add R.methodsS3.•••* gnu/packages/statistics.scm (r-r-methodss3): New variable. Ricardo Wurmus2016-01-07
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