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* gnu: ii: Update to 1.8.Tobias Geerinckx-Rice2018-03-04
| | | | * gnu/packages/irc.scm (ii): Update to 1.8.
* gnu: cloc: Update phase style.Tobias Geerinckx-Rice2018-03-04
| | | | | * gnu/packages/code.scm (cloc)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
* gnu: cloc: Update to 1.76.Tobias Geerinckx-Rice2018-03-04
| | | | | | * gnu/packages/code.scm (cloc): Update to 1.76. [source]: Update origin URI scheme. [inputs]: Add perl-parallel-forkmanager.
* gnu: liblo: Mark up description.Tobias Geerinckx-Rice2018-03-04
| | | | * gnu/packages/audio.scm (liblo)[description]: Use @dfn.
* gnu: multipath-tools: Update to 0.7.4.Marius Bakke2018-03-04
| | | | | * gnu/packages/linux.scm (multipath-tools): Update to 0.7.4. [source]: Download using HTTPS.
* gnu: freexl: Update to 1.0.5 [security fixes].Marius Bakke2018-03-04
| | | | | | | Fixes CVE-2018-7435, CVE-2018-7436, CVE-2018-7437, CVE-2018-7438 and CVE-2018-7439. * gnu/packages/xml.scm (freexl): Update to 1.0.5.
* gnu: ceph: Update to 12.2.4.Marius Bakke2018-03-04
| | | | | | | | | | | | | | * gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to upstream changes. * gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file. * gnu/packages/patches/ceph-rocksdb-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/storage.scm (ceph): Update to 12.2.4. [source](patches): Adjust. [arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags. Build with CMAKE-3.11. Adjust file substitutions. Wrap 'ceph' executable. [native-inputs]: Add GPERF. [inputs]: Replace BOOST with BOOST-1.66. Add PYTHON2-PRETTYTABLE.
* gnu: Add cmake@3.11.Marius Bakke2018-03-04
| | | | * gnu/packages/cmake.scm (cmake-3.11): New public variable.
* gnu: Add boost@1.66.0.Marius Bakke2018-03-04
| | | | * gnu/packages/boost.scm (boost-1.66): New public variable.
* gnu: java-snappy: Update to 1.1.7.Marius Bakke2018-03-04
| | | | | | | * gnu/packages/compression.scm (java-snappy): Update to 1.1.7. [arguments]: Use INVOKE instead of SYSTEM*. Avoid CMAKE dependency. Delete Hadoop test. Enable fixed test. [native-inputs]: Add JAVA-COMMONS-LANG and JAVA-COMMONS-IO.
* gnu: snappy: Update to 1.1.7.Marius Bakke2018-03-04
| | | | | | | | * gnu/packages/compression.scm (snappy): Update to 1.1.7. [source]: Change to git archive. Set file-name. [build-system]: Change to CMAKE-BUILD-SYSTEM. [arguments]: Add #:configure-flags. [description]: Fix infractions.
* gnu: rocksdb: Update to 5.10.4.Marius Bakke2018-03-04
| | | | | | | | | | * gnu/packages/databases.scm (rocksdb): Update to 5.10.4. [source]: Substitute the unbundled copy of GNU Parallel. [arguments]: Add "V=1" "USE_RTTI=1" and "ROCKSDBTESTS_END=db_tailing_iter_test" to #:make-flags. Set #:test-target to "check_some". Respect parallel jobs in 'build-release-libraries' phase and rename to 'build'. [license]: Update for changes in 5.5.4.
* gnu: inkscape: Disable duplicate icon cache generation.Danny Milosavljevic2018-03-04
| | | | | * gnu/packages/inkscape.scm (inkscape): Disable duplicate icon cache generation.
* gnu: abiword: Disable duplicate icon cache generation.Danny Milosavljevic2018-03-04
| | | | * gnu/packages/abiword.scm (abiword): Disable duplicate icon cache generation.
* gnu: python-funcy: Fix tests.Danny Milosavljevic2018-03-04
| | | | * gnu/packages/python.scm (python-funcy)[native-inputs]: Delete python-pytest-warnings.
* gnu: antlr3-3.3: Fix java8 issue.Gábor Boskovits2018-03-04
| | | | | | | | * gnu/packages/java.scm (antlr3-3.3)[source]: Add patch. * gnu/packages/patches/antlr3-3_3-fix-java8-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: antlr3-3.1: Fix java8 issue.Gábor Boskovits2018-03-04
| | | | | | | | * gnu/packages/java.scm (antlr3-3.1)[source]: Add patch. * gnu/packages/patches/antlr3-3_1-fix-java8-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: go-github-com-aki237-nscjar: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/golang.scm (go-github-com-aki237-nscjar)[source]: Declare a source file-name.
* gnu: go-github-com-davidjpeacock-cli: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/golang.scm (go-github-com-davidjpeacock-cli)[source]: Declare a source file-name.
* gnu: go-github-com-alsm-ioprogress: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/golang.scm (go-github-com-alsm-ioprogress)[source]: Declare a source file-name.
* gnu: freegish: Declare a source file-name.Efraim Flashner2018-03-04
| | | | * gnu/packages/games.scm (freegish)[source]: Declare a source file-name.
* gnu: disorderfs: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/file-systems.scm (disorderfs)[source]: Declare a source file-name.
* gnu: emacs-sly: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/emacs.scm (emacs-sly)[source]: Declare a source file-name.
* gnu: emacs-epl: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/emacs.scm (emacs-epl)[source]: Declare a source file-name.
* gnu: python-apsw: Use invoke.Efraim Flashner2018-03-04
| | | | * gnu/packages/databases.scm (python-apsw)[arguments]: Use invoke.
* gnu: python-apsw: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/databases.scm (python-apsw)[source]: Declare a source file-name.
* gnu: kurly: Declare a source file-name.Efraim Flashner2018-03-04
| | | | * gnu/packages/curl.scm (kurly)[source]: Declare a source file-name.
* gnu: unshield: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/compression.scm (unshield)[source]: Declare a source file-name.
* gnu: sfarkxtc: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/compression.scm (sfarkxtc)[source]: Declare a source file-name.
* gnu: piranha: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source file-name.
* gnu: libdivsufsort: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a source file-name.
* gnu: seek: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/bioinformatics.scm (seek)[source]: Declare a source file-name.
* gnu: r-dropbead: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source file-name.
* gnu: faust@2: Declare a source file-name.Efraim Flashner2018-03-04
| | | | * gnu/packages/audio.scm (faust@2)[source]: Declare a source file-name.
* gnu: rubberband: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/audio.scm (rubberband)[source]: Declare a source file-name.
* gnu: qjackrcd: Declare a source file-name.Efraim Flashner2018-03-04
| | | | * gnu/packages/audio.scm (qjackrcd)[source]: Declare a source file-name.
* gnu: lv2-devel: Declare a source file-name.Efraim Flashner2018-03-04
| | | | * gnu/packages/audio.scm (lv2-devel)[source]: Declare a source file-name.
* gnu: lv2-mda-piano: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/audio.scm (lv2-mda-piano)[source]: Declare a source file-name.
* gnu: papagayo: Declare a source file-name.Efraim Flashner2018-03-04
| | | | | * gnu/packages/animation.scm (papagayo)[source]: Declare a source file-name.
* gnu: masscan: Declare a source file-name.Efraim Flashner2018-03-04
| | | | * gnu/packages/admin.scm (masscan)[source]: Declare a source file-name.
* services: redis: Add a default-value to the redis-service-type.Christopher Baines2018-03-03
| | | | | * gnu/packages/databases.scm (redis-service-type)[default-value]: Set to (redis-configuration).
* services: mysql: Add a default-value to the mysql-service-type.Christopher Baines2018-03-03
| | | | | * gnu/services/databases.scm (mysql-service-type)[default-value]: Set to (mysql-configuration).
* services: postgresql: Add a default-value to the postgresql-service-type.Christopher Baines2018-03-03
| | | | | | | * gnu/packages/databases.scm (<postgresql-configuration>) [config-file,data-directory]: Add default. (postgresql-service-type)[default-value]: Set to (postgresql-configuration).
* linux-modules: Add module-aliases.Danny Milosavljevic2018-03-03
| | | | * gnu/build/linux-modules.scm (module-aliases): New variable.
* gnu: tor: Update to 0.3.2.10 [security fixes].Tobias Geerinckx-Rice2018-03-03
| | | | | | | This release fixes TROVE-2018-001 (also tracked as CVE-2018-0490), TROVE-2018-002 (CVE-2018-049), and TROVEs-2018-00{3,4} as well. * gnu/packages/tor.scm (tor): Update to 0.3.2.10.
* gnu: Add dropseq-tools.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
* gnu: Add java-picard-2.10.3.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
* gnu: Add java-htsjdk-2.10.1.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
* gnu: Add java-htsjdk-latest.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
* gnu: Add java-biojava-alignment-4.0.Ricardo Wurmus2018-03-03
| | | | * gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
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