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* Revert "gnu: %default-extra-linux-options: Remove redundant options."David Craven2016-09-29
| | | | | | Options aren't redundant and are required for building the initrd. This reverts commit 50dbc03647170fded9e0bca0cc4b7e1614aa38db.
* gnu: dbus-c++: License has "or later" clause.Ludovic Courtès2016-09-29
| | | | * gnu/packages/glib.scm (dbus-c++)[license]: Change to LGPL2.1+.
* gnu: sra-tools: Fix build on i686.Ricardo Wurmus2016-09-28
| | | | | * gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass "VDB_LIBDIR" in make-flags; dynamically link libmagic.
* gnu: tilda: Update to 1.3.3.Efraim Flashner2016-09-28
| | | | * gnu/packages/terminals.scm (tilda): Update to 1.3.3.
* gnu: Add xonsh.Stefan Reichoer2016-09-28
| | | | | | * gnu/packages/shells.scm (xonsh): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: attic: Superseded by borg.Leo Famulari2016-09-28
| | | | * gnu/packages/backup.scm (attic)[properties]: New field.
* gnu: nestopia-ue: Update to version 1.47.Taylan Ulrich Bayırlı/Kammer2016-09-28
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* gnu: higan: Update to version 101.Taylan Ulrich Bayırlı/Kammer2016-09-28
| | | | * gnu/packages/games.scm (higan): Update to version 101.
* gnu: git: Add input perl-term-readkey for 'git-svn'.Thomas Danckaert2016-09-28
| | | | | | | * gnu/packages/version-control.scm (git)[inputs]: Add perl-term-readkeys. [arguments]: Add perl-term-readkeys to the PERL5LIB of `git-svn'. Signed-off-by: 宋文武 <iyzsong@gmail.com>
* gnu: linux-libre-beagle-bone-black: Remove kernel variant.David Craven2016-09-28
| | | | | | | linux-libre-beagle-bone-black is misslabeled. This kernel variant is for the original beagle board. * gnu/packages/linux.scm (linux-libre-beagle-bone-black): Remove.
* gnu: make-linux-libre: Install device tree files.David Craven2016-09-28
| | | | * gnu/packages/linux.scm (make-linux-libre): Install device tree files.
* gnu: %default-extra-linux-options: Remove redundant options.David Craven2016-09-28
| | | | | * gnu/packages/linux.scm (%default-extra-linux-options): Remove redundant options.
* gnu: Add sdcc.David Craven2016-09-28
| | | | | * gnu/packages/sdcc.scm (sdcc): New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu: Add picocom.David Craven2016-09-28
| | | | * gnu/packages/terminals.scm (picocom): New variable.
* gnu: opendht: Propagate msgpack.Lukas Gradl2016-09-28
| | | | | | | * gnu/packages/crypto.scm (opendht)[inputs]: Remove msgpack. [propagated-inputs]: Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: telephony: Add 'license:' prefix.Lukas Gradl2016-09-28
| | | | | | | | | | | | | | | * gnu/packages/telephony.scm (commoncpp) [license]: Add prefix. (ucommon) [license]: Add prefix. (ccrtp) [license]: Add prefix. (osip) [license]: Add prefix. (exosip) [license]: Add prefix. (sipwitch) [license]: Add prefix. (libsrtp) [license]: Add prefix. (libiax2) [license]: Add prefix. (seren) [license]: Add prefix. (pjproject-sfl) [license]: Add prefix. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add gsm.Lukas Gradl2016-09-28
| | | | | | * gnu/packages/audio.scm (gsm): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add dbus-c++.Lukas Gradl2016-09-28
| | | | | | * gnu/packages/glib.scm (dbus-c++): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: libressl: Update to 2.5.0.Leo Famulari2016-09-27
| | | | * gnu/packages/tls.scm (libressl): Update to 2.5.0.
* gnu: encfs: Update to 1.9.1.Tobias Geerinckx-Rice2016-09-28
| | | | * gnu/packages/crypto.scm (encfs): Update to 1.9.1.
* gnu: btrfs-progs: Update to 4.7.3.Tobias Geerinckx-Rice2016-09-28
| | | | * gnu/packages/linux.scm (btrfs-progs): Update to 4.7.3.
* gnu: zip: Use 'modify-phases'.Tobias Geerinckx-Rice2016-09-28
| | | | * gnu/packages/zip.scm (zip)[arguments]: Use 'modify-phases'.
* gnu: isc-dhcp: Update bundled bind to 9.9.9-P3 [fixes CVE-2016-2776].Leo Famulari2016-09-27
| | | | * gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled bind to 9.9.9-P3.
* gnu: bind: Update to 9.10.4-P3 [fixes CVE-2016-2776].Leo Famulari2016-09-27
| | | | * gnu/packages/dns.scm (bind): Update to 9.10.4-P3.
* gnu: Add python-q.Stefan Reichoer2016-09-27
| | | | | | * gnu/packages/python.scm (python-q, python2-q): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: expat: Fix regression caused by fix for CVE-2016-0718.Leo Famulari2016-09-27
| | | | | | | | | * gnu/packages/xml.scm (expat)[replacement]: New field. (expat/fixed): New variable. * gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add gctp.Thomas Danckaert2016-09-27
| | | | | | * gnu/packages/maths.scm (gctp): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add gloox.ng02016-09-27
| | | | | | * gnu/packages/messaging.scm (gloox): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: femtolisp: Don't build on mips64el or armhf.ng02016-09-27
| | | | | | | * gnu/packages/lisp.scm (femtolisp)[supported-systems]: New field, remove support for mips64el and armhf. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add gobby.Andy Wingo2016-09-27
| | | | * gnu/packages/gobby.scm (gobby): New variable.
* gnu: Add obby.Andy Wingo2016-09-27
| | | | * gnu/packages/gobby.scm (obby): New variable.
* gnu: Add libnet6.Andy Wingo2016-09-27
| | | | | * gnu/packages/gobby.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
* gnu: Add libxml++-2.Andy Wingo2016-09-27
| | | | * gnu/packages/gnome.scm (libxml++-2): New variable.
* gnu: New default Dovecot service postmaster_addressAndy Wingo2016-09-27
| | | | | | | * gnu/services/mail.scm (dovecot-configuration): Change default for postmaster-address, as dovecot is now requiring a non-empty value and will fail to start up otherwise. * doc/guix.texi (Mail Services): Update.
* gnu: aria2: Update to 1.27.1.Efraim Flashner2016-09-27
| | | | * gnu/packages/bittorrent.scm (aria2): Update to 1.27.1.
* gnu: python-plastid: Update to 1.4.6.Ben J Woodcroft2016-09-27
| | | | | | * gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to 1.4.6. [propagated-inputs]: Add python-termcolor.
* gnu: Add python-termcolor.Ben J Woodcroft2016-09-27
| | | | | * gnu/packages/python.scm (python-termcolor, python2-termcolor): New variables.
* gnu: python-pysam: Enable tests.Marius Bakke2016-09-27
| | | | | | | * gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from PyPi to source archive due to missing test data. [arguments]: Add check phase after install. [native-inputs]: Add python-nose, samtools and bcftools.
* gnu: python-pysam: Delete bundled htslib.Marius Bakke2016-09-27
| | | | | | | * gnu/packages/bioinformatics.scm (python-pysam)[source]: Add snippet to delete htslib. [arguments]: Add htslib flags in 'set-flags phase. [propagated-inputs]: New field. Add htslib.
* gnu: python-pysam: Use 'modify-phases'.Marius Bakke2016-09-27
| | | | | * gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Use 'modify-phases'.
* gnu: Add bcftools.Marius Bakke2016-09-27
| | | | * gnu/packages/bioinformatics.scm (bcftools): New variable.
* gnu: python2-pbcore: Update to 1.2.10.Marius Bakke2016-09-27
| | | | | * gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10. [propagated-inputs]: New field. Add python2-pyxb.
* gnu: Add python-pyxb.Marius Bakke2016-09-27
| | | | * gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
* gnu: python-pysam: Update to 0.9.1.4.Marius Bakke2016-09-27
| | | | | * gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update to 0.9.1.4.
* Add missing exports.Ludovic Courtès2016-09-27
| | | | | | | | | Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com> at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html>. * gnu/system/file-systems.scm (%tty-gid): Export. * guix/build-system/python.scm (default-python, default-python2): Export.
* gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309].Leo Famulari2016-09-26
| | | | * gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
* gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052].Leo Famulari2016-09-26
| | | | | | * gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j. (openssl-1.0.2i): Replace with... (openssl-1.0.2j): ... new variable.
* gnu: libftdi: Propagate the libusb input.Danny Milosavljevic2016-09-26
| | | | | | | * gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a propagated-input. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: ncbi-vdb: Only build on i686 and x86_64.Ricardo Wurmus2016-09-26
| | | | | | * gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only build on i686 and x86_64. [arguments]: Add mandatory "-msse2" flag to CFLAGS.
* gnu: ghc-pandoc: Update to 1.17.2.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
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