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* gnu: slepc: Update to 3.6.2.Eric Bavier2015-11-20
| | | | | | * gnu/packages/maths.scm (slepc): Update to 3.6.2. [arguments]: Append "/lib" to arpack configure flag. Use 'inputs' rather than '%build-inputs' in 'configure phase.
* gnu: petsc: Update to 3.6.2.Eric Bavier2015-11-20
| | | | * gnu/packages/maths.scm (petsc): Update to 3.6.2.
* gnu: mumps: Update to 5.0.1.Eric Bavier2015-11-20
| | | | * gnu/packages/maths.scm (mumps): Update to 5.0.1.
* gnu: openmpi: Update to 1.10.1.Eric Bavier2015-11-20
| | | | | | | * gnu/packages/mpi.scm (openmpi): Update to 1.10.1. [arguments]: Remove now-unsupported configure flags. Add --enable-builtin-atomics. Remove development-oriented --enable-debug.
* gnu: hwloc: Update to 1.11.1.Eric Bavier2015-11-20
| | | | | | | * gnu/packages/mpi.scm (hwloc): Update to 1.11.1. [source]: Remove patch. * gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it. * gnu-system.am (dist_patch_DATA): Remove it.
* gnu: guitarix: Update to 0.34.0.Ricardo Wurmus2015-11-20
| | | | | | | | * gnu/packages/audio.scm (guitarix): Update to 0.34.0. [source]: Remove patch. [inputs]: Add webkitgtk/gtk+-2. * gnu/packages/patches/guitarix-c++11: Remove file. * gnu-system.am (dist_patch_DATA): Remove it.
* gnu: services: Fix typo in gpm-dmd-service.David Thompson2015-11-20
| | | | * gnu/services/base.scm (gpm-dmd-service): s/dmd/gpm/
* gnu: Add emulation-station.David Thompson2015-11-20
| | | | * gnu/packages/games.scm (emulation-station): New variable.
* gnu: preseq: Update to 2.0.Ricardo Wurmus2015-11-20
| | | | | | | | | | | * gnu/packages/bioinformatics.scm (preseq): Update to 2.0. [source]: Add file-name field, remove patches. [arguments]: Remove unused build phases, add make flags. [inputs]: Add smithlab-cpp. * gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file. * gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove them.
* gnu: Add smithlab-cpp.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/bioinformatics.scm (smithlab-cpp): New variable.
* gnu: edirect: Update home page.Ricardo Wurmus2015-11-20
| | | | | * gnu/packages/bioinformatics.scm (edirect)[home-page]: Append trailing slash to home page.
* gnu: sra-tools: Update to 2.5.4.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.4.
* gnu: ncbi-vdb: Update to 2.5.4.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.4.
* gnu: ngs-java: Update to 1.2.2.Ricardo Wurmus2015-11-20
| | | | | * gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2. [arguments]: Remove build phase "fix-java-symlink-installation".
* gnu: ngs-sdk: Update to 1.2.2.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.2.
* gnu: Add ruby-net-ssh.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-net-ssh): New variable.
* gnu: Add ruby-mocha.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-mocha): New variable.
* gnu: Add ruby-redcarpet.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-redcarpet): New variable.
* gnu: Add ruby-introspection.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-introspection): New variable.
* gnu: Add ruby-instantiator.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-instantiator): New variable.
* gnu: Add ruby-blankslate.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-blankslate): New variable.
* gnu: Add ruby-metaclass.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-metaclass): New variable.
* gnu: Add ruby-test-unit.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-test-unit): New variable.
* gnu: Add ruby-packnga.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-packnga): New variable.
* gnu: Add ruby-gettext.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-gettext): New variable.
* gnu: Add ruby-text.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-text): New variable.
* gnu: Add ruby-locale.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-locale): New variable.
* gnu: Add ruby-power-assert.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-power-assert): New variable.
* gnu: bless: Build only for x86_64.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/bioinformatics.scm (bless): Add supported-systems field.
* gnu: htseq: Propagate numpy.Ricardo Wurmus2015-11-20
| | | | | | * gnu/packages/bioinformatics.scm (htseq)[inputs]: Move python2-numpy from here ... [propagated-inputs]: ... to here.
* gnu: ant: Update to 1.9.6.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/java.scm (ant): Update to 1.9.6.
* gnu: guix: Update development snapshot to 5c36edc.Ludovic Courtès2015-11-19
| | | | * gnu/packages/package-management.scm (guix-devel): Update to 5c36edc.
* gnu: jack-2: Fix jack_control script.Ricardo Wurmus2015-11-19
| | | | | | * gnu/packages/audio.scm (jack-2)[inputs]: Add python2-dbus. [arguments]: Use python-2 and add build phase to wrap jack_control Python script.
* services: Add udev-rule procedure.Ricardo Wurmus2015-11-19
| | | | | * gnu/services/base.scm (udev-rule): New procedure. (kvm-udev-rule): Rewrite as variable in terms of udev-rule.
* gnu: ghc-unordered-containers: Enable tests.Eric Bavier2015-11-19
| | | | | | | * gnu/packages/haskell.scm (ghc-unordered-containers) [arguments]: Remove. [inputs]: Add ghc-chasingbottoms, ghc-test-framework, ghc-test-framework-hunit, and ghc-test-framework-quickcheck2.
* gnu: Add ghc-chasingbottoms.Eric Bavier2015-11-19
| | | | * gnu/packages/haskell.scm (ghc-chasingbottoms): New variable.
* gnu: ghc-attoparsec: Enable tests.Eric Bavier2015-11-19
| | | | | | * gnu/packages/haskell.scm (ghc-attoparsec)[arguments]: Remove. [inputs]: Add ghc-quickcheck, ghc-quickcheck-unicode, ghc-test-framework, and ghc-test-framework-quickcheck2.
* gnu: Add ghc-test-framework-quickcheck2.Eric Bavier2015-11-19
| | | | | * gnu/packages/haskell.scm (ghc-test-framework-quickcheck2): New variable.
* gnu: ghc-async: Enable tests.Eric Bavier2015-11-19
| | | | | | * gnu/packages/haskell.scm (ghc-async)[arguments]: Remove. [inputs]: Add ghc-hunit, ghc-test-framework, and ghc-test-framework-hunit.
* gnu: ghc-regex-posix: Propagate inputs.Eric Bavier2015-11-19
| | | | | * gnu/packages/haskell.scm (ghc-regex-posix): Propagate ghc-regex-base input.
* gnu: Add ghc-test-framework-hunit.Eric Bavier2015-11-19
| | | | * gnu/packages/haskell.scm (ghc-test-framework-hunit): New variable.
* gnu: Add ghc-test-framework.Eric Bavier2015-11-19
| | | | * gnu/packages/haskell.scm (ghc-test-framework): New variable.
* gnu: Add ghc-libxml.Eric Bavier2015-11-19
| | | | * gnu/packages/haskell.scm (ghc-libxml): New variable.
* gnu: Add ghc-hostname.Eric Bavier2015-11-19
| | | | * gnu/packages/haskell.scm (ghc-hostname): New variable.
* gnu: tilda: Update to 1.3.0.Efraim Flashner2015-11-19
| | | | | * gnu/packages/terminals.scm (tilda): Update to 1.3.0. [inputs]: Switch vte from 0.36 to 0.40, remove zip.
* gnu: youtube-dl: Update to 2015.11.18.Efraim Flashner2015-11-19
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2015.11.18.
* gnu: libsndfile: Add fixes for CVE-2014-9496 and CVE-2015-7805.Mark H Weaver2015-11-18
| | | | | | | * gnu/packages/patches/libsndfile-CVE-2014-9496.patch, gnu/packages/patches/libsndfile-CVE-2015-7805.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/pulseaudio.scm (libsndfile)[source]: Add patches.
* gnu: libxslt: Add fix for CVE-2015-7995.Mark H Weaver2015-11-18
| | | | | | * gnu/packages/patches/libxslt-CVE-2015-7995.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/xml.scm (libxslt)[source]: Add patch.
* gnu: libxml2: Add fixes for CVE-2015-{1819,7941,7942,8035} and other bugs.Mark H Weaver2015-11-18
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/libxml2-CVE-2015-1819.patch, gnu/packages/patches/libxml2-CVE-2015-7941-pt1.patch, gnu/packages/patches/libxml2-CVE-2015-7941-pt2.patch, gnu/packages/patches/libxml2-CVE-2015-7942-pt1.patch, gnu/packages/patches/libxml2-CVE-2015-7942-pt2.patch, gnu/packages/patches/libxml2-CVE-2015-8035.patch, gnu/packages/patches/libxml2-bug-737840.patch, gnu/packages/patches/libxml2-bug-738805.patch, gnu/packages/patches/libxml2-bug-746048.patch, gnu/packages/patches/libxml2-bug-747437.patch, gnu/packages/patches/libxml2-bug-751603.patch, gnu/packages/patches/libxml2-bug-751631.patch, gnu/packages/patches/libxml2-bug-754946.patch, gnu/packages/patches/libxml2-bug-754947.patch, gnu/packages/patches/libxml2-bug-755857.patch, gnu/packages/patches/libxml2-fix-catalog-corruption.patch, gnu/packages/patches/libxml2-id-attrs-in-xmlSetTreeDoc.patch, gnu/packages/patches/libxml2-node-sort-order-pt1.patch, gnu/packages/patches/libxml2-node-sort-order-pt2.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/xml.scm (libxml2)[source]: Add patches.
* gnu: libpng: Update to 1.5.24 [fixes CVE-2015-8126].Mark H Weaver2015-11-18
| | | | * gnu/packages/image.scm (libpng): Update to 1.5.24.
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