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* gnu: Fix common unquote typos.Tobias Geerinckx-Rice2018-03-17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | It's easy to mistype ‘("foo" foo)’ as ‘("foo", foo)’ (which also works). Fix such typos for the proper edification of our young. * gnu/packages/android.scm: Move unquotes to their operands. * gnu/packages/bootloaders.scm: Likewise. * gnu/packages/build-tools.scm: Likewise. * gnu/packages/chemistry.scm: Likewise. * gnu/packages/compression.scm: Likewise. * gnu/packages/connman.scm: Likewise. * gnu/packages/django.scm: Likewise. * gnu/packages/emulators.scm: Likewise. * gnu/packages/engineering.scm: Likewise. * gnu/packages/file-systems.scm: Likewise. * gnu/packages/freedesktop.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gimp.scm: Likewise. * gnu/packages/gl.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/graphics.scm: Likewise. * gnu/packages/haskell.scm: Likewise. * gnu/packages/irc.scm: Likewise. * gnu/packages/julia.scm: Likewise. * gnu/packages/kde-frameworks.scm: Likewise. * gnu/packages/linux.scm: Likewise. * gnu/packages/lua.scm: Likewise. * gnu/packages/mail.scm: Likewise. * gnu/packages/make-bootstrap.scm: Likewise. * gnu/packages/messaging.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/networking.scm: Likewise. * gnu/packages/ocaml.scm: Likewise. * gnu/packages/perl.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/python-web.scm: Likewise. * gnu/packages/qt.scm: Likewise. * gnu/packages/ratpoison.scm: Likewise. * gnu/packages/sdl.scm: Likewise. * gnu/packages/sml.scm: Likewise. * gnu/packages/terminals.scm: Likewise. * gnu/packages/text-editors.scm: Likewise. * gnu/packages/video.scm: Likewise. * gnu/packages/virtualization.scm: Likewise. * gnu/packages/vulkan.scm: Likewise. * gnu/packages/wget.scm: Likewise. * gnu/packages/wine.scm: Likewise. * gnu/packages/wm.scm: Likewise. * gnu/packages/xdisorg.scm: Likewise. * gnu/packages/xml.scm: Likewise. * gnu/packages/xorg.scm: Likewise.
* gnu: shaderc: Use more standard keys.Tobias Geerinckx-Rice2018-03-17
| | | | | | * gnu/packages/vulkan.scm (shaderc)[arguments]: Move cmake options from the raw INVOKE call to #:build-type and #:configure-flags. Adjust the ‘configure’ phase accordingly.
* gnu: shaderc: Use standard versioning scheme.Tobias Geerinckx-Rice2018-03-17
| | | | | * gnu/packages/vulkan.scm (shaderc)[version]: Use GIT-VERSION with a ‘0.0.0’ prefix.
* gnu: shaderc: Fix formatting.Tobias Geerinckx-Rice2018-03-17
| | | | | * gnu/packages/vulkan.scm (shaderc): Use conventional indentation. [native-inputs]: Move unquotes to their operands.
* gnu: texlive-latex-type1cm: Fix description typo.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/tex.scm (texlive-latex-type1cm)[description]: Fix typo.
* gnu: python-pkginfo: Update to 1.4.2.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-pkginfo): Update to 1.4.2.
* gnu: python-nbformat: Update to 4.4.0.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-nbformat): Update to 4.4.0.
* gnu: python-simplejson: Update to 3.13.2.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-simplejson): Update to 3.13.2.
* gnu: python-ptyprocess: Update to 0.5.2.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-ptyprocess): Update to 0.5.2.
* gnu: python-chai: Update to 1.1.2.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-chai): Update to 1.1.2.
* gnu: python-jupyter-console: Update to 5.2.0.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-jupyter-console): Update to 5.2.0.
* gnu: python-kazoo: Update to 2.4.0.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-kazoo): Update to 2.4.0.
* gnu: python-jupyter-core: Update to 4.4.0.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-jupyter-core): Update to 4.4.0.
* gnu: python-phonenumbers: Update to 8.9.1.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-phonenumbers): Update to 8.9.1.
* gnu: python-decorator: Update to 4.2.1.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-decorator): Update to 4.2.1.
* gnu: python-jsonschema: Update to 2.6.0.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-jsonschema): Update to 2.6.0.
* gnu: python-protobuf: Update to 3.5.2.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/protobuf.scm (python-protobuf): Update to 3.5.2.
* gnu: python-oslotest: Update to 3.3.0.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/openstack.scm (python-oslotest): Update to 3.3.0.
* gnu: python-bcrypt: Update to 3.1.4.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/password-utils.scm (python-bcrypt): Update to 3.1.4.
* gnu: python-entrypoints: Update to 0.2.3.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-entrypoints): Update to 0.2.3.
* gnu: Use HTTPS for r-project.org home pages.Tobias Geerinckx-Rice2018-03-17
| | | | | | | | | | * gnu/packages/cran.scm (r-performanceanalytics, r-qap, r-gclus, r-leaps) (r-splus2r, r-ifultools, r-sapa, r-quantmod, r-tseries, r-wmtsa, r-fractal) (r-urca, r-trend, r-expm, r-complexplus, r-powerplus, r-signal, r-abind) (r-prroc)[home-page]: Use HTTPS. * gnu/packages/emacs.scm (emacs-ess)[home-page]: Likewise. * gnu/packages/graph.scm (r-diffusionmap)[home-page]: Likewise. * gnu/packages/statistics.scm (r-minimal, r-quantreg)[home-page]: Likewise.
* gnu: perl-sql-abstract: Update to 1.85.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/databases.scm (perl-sql-abstract): Update to 1.85.
* gnu: perl-date-manip: Update to 6.70.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/perl.scm (perl-date-manip): Update to 6.70.
* gnu: Fix more ‘filesystem’ spellings.Tobias Geerinckx-Rice2018-03-17
| | | | | | | | | * gnu/packages/python.scm (python-pyinotify)[description]: Spell ‘file system’ as ‘file system’. * gnu/packages/syncthing.scm (go-github-com-zillode-notify)[synopsis]: Likewise. (go-github-com-prometheus-procfs)[description]: Likewise. Minorly tweak grammar.
* gnu: wine-staging: Update to 3.4.Rutger Helling2018-03-17
| | | | * gnu/packages/wine.scm (wine-staging): Update to 3.4.
* gnu: wine-staging-patchset-data: Update to 3.4.Rutger Helling2018-03-17
| | | | * gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.4.
* gnu: intel-gpu-tools: Supported only on x86_64-linux and i686-linux.Mark H Weaver2018-03-17
| | | | * gnu/packages/admin.scm (intel-gpu-tools)[supported-systems]: New field.
* gnu: inkscape: Build with potrace support.Arun Isaac2018-03-17
| | | | | | | From Inkscape 0.92, potrace is required for the Paintbucket and Trace Bitmap tools. * gnu/packages/inkscape.scm (inkscape)[inputs]: Add potrace.
* vm: Pass "-append ..." only once.Danny Milosavljevic2018-03-16
| | | | * gnu/build/vm.scm (load-in-linux-vm): Pass "-append ..." only once.
* gnu: Add python2-libadalang.Danny Milosavljevic2018-03-16
| | | | * gnu/packages/ada.scm (python2-libadalang): New variable.
* gnu: libvorbis: Replace with 1.3.6 [fixes CVE-2018-5146].Marius Bakke2018-03-16
| | | | | * gnu/packages/xiph.scm (libvorbis)[replacement]: New field. (libvorbis-1.3.6): New public variable.
* gnu: icedtea@3: Update to 3.7.0 [security fixes].Leo Famulari2018-03-16
| | | | | | | Fixes CVE-2018-{2579,2582,2588,2599,2602,2603,2618,2629,2633,2634,2637,2641, 2663,2677,2678}. * gnu/packages/java.scm (icedtea-8): Update to 3.7.0.
* gnu: icedtea@2: Update to 2.6.13 [security fixes].Leo Famulari2018-03-16
| | | | | | | Fixes CVE-2018-{2579,2588,2599,2602,2603,2618,2629,2633,2634,2637,2641,2663, 2677,2678}. * gnu/packages/java.scm (icedtea-7): Update to 2.6.13.
* gnu: Add pigx.Ricardo Wurmus2018-03-16
| | | | * gnu/packages/bioinformatics.scm (pigx): New variable.
* gnu: pigx-rnaseq: Disable memory hungry test.Ricardo Wurmus2018-03-16
| | | | | * gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase to disable a memory hungry test.
* gnu: util-linux: Fix CVE-2018-7738.Leo Famulari2018-03-16
| | | | | | | * gnu/packages/patches/util-linux-CVE-2018-7738.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (util-linux)[replacement]: New field. (util-linux/fixed): New variable.
* gnu: Add emacs-deft.Konrad Hinsen2018-03-16
| | | | | | * gnu/packages/emacs.scm (emacs-deft): New variable. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
* gnu: Add emacs-exec-path-from-shell.Konrad Hinsen2018-03-16
| | | | | | * gnu/packages/emacs.scm (emacs-exec-path-from-shell): New variable. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
* gnu: Add pigx-scrnaseq.Ricardo Wurmus2018-03-16
| | | | * gnu/packages/bioinformatics.scm (pigx-scrnaseq): New variable.
* gnu: kentutils: Build with mariadb.Ricardo Wurmus2018-03-16
| | | | | * gnu/packages/bioinformatics.scm (kentutils)[inputs]: Replace mysql with mariadb.
* linux-initrd: Autoload known-module-aliases, again.Mark H Weaver2018-03-15
| | | | | | Fixes a regression introduced in 8ab10c19d72caab7459034a6e72b0117d7c5cec8. * gnu/system/mapped-devices.scm: Autoload 'known-module-aliases'.
* gnu: linux-libre: Update to 4.15.10.Mark H Weaver2018-03-15
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.10. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.27.Mark H Weaver2018-03-15
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.27. (%linux-libre-4.14-hash): Update hash.
* linux-initrd: Move 'check-device-initrd-modules' elsewhere.Ludovic Courtès2018-03-15
| | | | | | | | | | | | This mostly reverts ca23693d280de5c4031058da4d3041d830080484, which introduced a circular dependency between (gnu system linux-initrd) and (gnu system mapped-devices). Reported by Eric Bavier. * gnu/system/linux-initrd.scm (check-device-initrd-modules): Move to... * gnu/system/mapped-devices.scm (check-device-initrd-modules): ... here. * po/guix/POTFILES.in: Adjust accordingly.
* gnu: idris: Provide the right versions of dependencies.Alex ter Weele2018-03-15
| | | | | | | | | | | | Previously it would fail to build. See <https://bugs.gnu.org/30741>. * gnu/packages/idris.scm (idris)[inputs]: alphebetize ghc-vector-binary-instances and ghc-async. Use ghc-aeson-1.1.2.0, ghc-cheapskate-0.1.0.5, and ghc-trifecta-1.6.2.1. Remove ghc-aeson, ghc-cheapskate, ghc-parsers, ghc-tasty, ghc-tasty-golden, ghc-tasty-rerun, ghc-trifecta, and ghc-zlib. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-cheapskate-0.1.0.5.Alex ter Weele2018-03-15
| | | | | | * gnu/packages/idris.scm (ghc-cheapskate-0.1.0.5): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-trifecta-1.6.2.1.Alex ter Weele2018-03-15
| | | | | | * gnu/packages/idris.scm (ghc-trifecta-1.6.2.1): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-aeson-1.1.2.0.Alex ter Weele2018-03-15
| | | | | | * gnu/packages/idris.scm (ghc-aeson-1.1.2.0): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: qtox: Wrap executable and fix misplaced comma (unquote).Diego Nicola Barbato2018-03-15
| | | | | | | | * gnu/packages/messaging.scm (qtox)[arguments]: Add phase "wrap-executable". [inputs]: Fix misplaced comma (unquote). Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* vm: Use 'invoke' instead of 'system*'.Ludovic Courtès2018-03-15
| | | | | | | * gnu/build/vm.scm (load-in-linux-vm, initialize-partition-table) (create-ext-file-system, create-fat-file-system) (install-efi, make-iso9660-image): Use 'invoke' instead of (unless (zero? (system* ...)) (error ...)).
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