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* gnu: r-vegan: Update to 2.4-2.Ben Woodcroft2017-01-21
| | | | * gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-2.
* gnu: diamond: Update to 0.8.34.Ben Woodcroft2017-01-21
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.8.34.
* gnu: linux-libre: Update to 4.9.5.Mark H Weaver2017-01-20
| | | | | * gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash) (linux-libre): Update to 4.9.5.
* gnu: linux-libre@4.4: Update to 4.4.44.Mark H Weaver2017-01-20
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.44.
* gnu: linux-libre@4.1: Update to 4.1.38.Mark H Weaver2017-01-20
| | | | * gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.38.
* gnu: gnutls: Add 'guile2.2-gnutls'.Ludovic Courtès2017-01-20
| | | | | | Suggested by Chris Webber. * gnu/packages/tls.scm (gnutls/guile-2.2): New variable.
* services: Reindent vpn.scm.Ludovic Courtès2017-01-20
| | | | | | This fixes indentation of 'match' forms. * gnu/services/vpn.scm: Pass through 'indent-code.el'.
* gnu: Add fcitx-configtool.Feng Shu2017-01-20
| | | | | | * gnu/packages/fcitx.scm (fcitx-configtool): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: datamash: Update to 1.1.1.Marius Bakke2017-01-20
| | | | * gnu/packages/datamash.scm (datamash): Update to 1.1.1.
* gnu: gd: Fix source URL.Marius Bakke2017-01-20
| | | | | | This is a followup to 3f0603ea653cefa9ff728c2637d3cd0d778b3602. * gnu/packages/gd.scm (gd-2.2.4)[source]: Fix URL.
* gnu: gd: Replace with gd-2.2.4 [fixes CVE-2016-{6912,9317} and others].Leo Famulari2017-01-20
| | | | | | | | | | 'CHANGELOG.md' in the development repository lists several fixed bugs with potential security implications: https://github.com/libgd/libgd/blob/gd-2.2.4/CHANGELOG.md * gnu/packages/gd.scm (gd)[replacement]: New field. (gd-2.2.4): New variable.
* gnu: r-msnid: Expand abbreviation in description.Ricardo Wurmus2017-01-20
| | | | | * gnu/packages/bioinformatics.scm (r-msnid)[description]: Expand "MS/MS" to "tandem mass spectrometry".
* gnu: r-msnbase: Expand abbreviation in description.Ricardo Wurmus2017-01-20
| | | | | * gnu/packages/bioinformatics.scm (r-msnbase)[description]: Expand "MS" to "mass spectrometry".
* gnu: Add r-fastica.Raoul Jean Pierre Bonnal2017-01-20
| | | | * gnu/packages/statistics.scm (r-fastica): New variable.
* gnu: Add r-lars.Raoul Jean Pierre Bonnal2017-01-20
| | | | * gnu/packages/statistics.scm (r-lars): New variable.
* gnu: Add r-mixtools.Raoul Jean Pierre Bonnal2017-01-20
| | | | * gnu/packages/statistics.scm (r-mixtools): New variable.
* gnu: Add r-cowplot.Raoul Jean Pierre Bonnal2017-01-20
| | | | * gnu/packages/statistics.scm (r-cowplot): New variable.
* services: network-manager: Use record for configuration.Christopher Baines2017-01-20
| | | | | | | | | | | | | | | | | | | * gnu/services/network-manager.scm (<network-manager-configuration>): New record type. (network-manager-shpeherd-service): Change to use the network-manager-configuration record, rather than a package. Generate a simple configuration file from the network-manager-configuration record. (network-manager-service-type): Update extensions to take the network-manager-configuration rather than a package. (network-manager-service): Remove function, the network-manager-service-type can be used instead, and this avoids keeping the function signature and value coresponding to the service type in sync. * doc/guix.texi (Networking Services): Remove documentation for the removed network-manager-service procedure, and add documentation of the network-manager-service-type variable and network-manager-configuration record. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
* gnu: obs: Update to 17.0.2.Efraim Flashner2017-01-20
| | | | | * gnu/packages/video.scm (obs): Update to 17.0.2. [inputs]: Add alsa-lib, fontconfig, speex.
* gnu: mariadb: Update to 10.1.21 [security fixes].Leo Famulari2017-01-19
| | | | | | | Fixes CVE-2016-3238 and CVE-2017-{3238,3243,3244,3257,3258,3265,3291,3312,3317, 3318}. * gnu/packages/databases.scm (mariadb): Update to 10.1.21.
* services: Create /var/run/utmpx upon activation.Ludovic Courtès2017-01-19
| | | | | | | | This fixes a bug whereby /var/run/utmpx would never be created, and thus accounting information would be missing. * gnu/services.scm (activation-script): Create /var/run/utmpx. * gnu/tests/base.scm (run-basic-test)["utmpx entry"]: New test.
* gnu: ansible: Update to 2.2.1 [fixes CVE-2016-9587].Ludovic Courtès2017-01-19
| | | | * gnu/packages/admin.scm (ansible): Update to 2.2.1.
* tests: Add 'nginx-service-type' test.Ludovic Courtès2017-01-19
| | | | | * gnu/tests/web.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* services: nginx: Add default values for <nginx-configuration> fields.Ludovic Courtès2017-01-19
| | | | | | * gnu/services/web.scm (<nginx-configuration>)[nginx, log-directory] [run-directory, server-blocks, upstream-blocks, file]: Add default values.
* services: nginx: Add support for 'location' blocks.Christopher Baines2017-01-19
| | | | | | | | | | | | | * gnu/services/web.scm (<nginx-server-configuration>): Add field 'locations'. (<nginx-location-configuration>): New record type. (<nginx-named-location-configuration>): New record type. (nginx-location-config): New function. (default-nginx-server-config): Include locations. * doc/guix.texi (Web Services): Document the new nginx-location-configuration and nginx-named-location-configuration data types, as well as the changes to the nginx-server-configuration. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* services: nginx: Add support the 'upstream' module.Christopher Baines2017-01-19
| | | | | | | | | | | | * gnu/services/web.scm (<nginx-upstream-configuration>): New record type. (<nginx-configuration>): Add new field upstream-blocks. (nginx-upstream): New function. (default-nginx-config): Add upstream-list parameter. (nginx-service): Add optional upstream list keyword argument. * doc/guix.texi (Web Services): Document the new nginx-upstream-configuration data type and changes to the nginx function. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dnsmasq: Enable dbus support.Christopher Baines2017-01-19
| | | | | | | | | | * gnu/pacakges/dns.scm (dnsmasq): Enable dbus support to allow for NetworkManager to use dnsmasq. [native-inputs]: Add pkg-config. [inputs]: Add dbus. [arguments]: Add COPTS="-DHAVE_DBUS" to make-flags. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
* gnu: Add libgig.Ricardo Wurmus2017-01-19
| | | | * gnu/packages/music.scm (libgig): New variable.
* gnu: Add Heimdal.Ludovic Courtès2017-01-19
| | | | * gnu/packages/kerberos.scm (heimdal): New variable.
* gnu: Move Kerberos implemetations to (gnu packages kerberos).Ludovic Courtès2017-01-19
| | | | | | | | | | | | | | * gnu/packages/mit-krb5.scm: Remove. * gnu/packages/shishi.scm: Remove. * gnu/packages/kerberos.scm: New file, from the concatenation of these two. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly. * gnu/packages/admin.scm, gnu/packages/cyrus-sasl.scm, gnu/packages/gnome.scm, gnu/packages/gnuzilla.scm, gnu/packages/gsasl.scm, gnu/packages/java.scm, gnu/packages/networking.scm, gnu/packages/nfs.scm, gnu/packages/onc-rpc.scm, gnu/packages/ssh.scm, gnu/packages/web.scm: Adjust accordingly.
* gnu: stagit: Update to 0.5.ng02017-01-18
| | | | * gnu/packages/version-control.scm (stagit): Update to 0.5.
* gnu: qemu: Fix CVE-2017-5525, CVE-2017-5526.Efraim Flashner2017-01-18
| | | | | | | * gnu/packages/qemu.scm (qemu)[source]: Add patches. * gnu/packages/patches/qemu-CVE-2017-5525.patch, gnu/packages/patches/qemu-CVE-2017-5526.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
* gnu: Add python-cram.Marius Bakke2017-01-18
| | | | * gnu/packages/python.scm (python-cram, python2-cram): New variables.
* gnu: Add leveldb.Marius Bakke2017-01-18
| | | | * gnu/packages/databases.scm (leveldb): New variable.
* gnu: Add mcabber.ng02017-01-18
| | | | | | * gnu/packages/messaging.scm (mcabber): New variable. Co-authored-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add loudmouth.ng02017-01-18
| | | | | | * gnu/packages/messaging.scm (loudmouth): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add menumaker.ng02017-01-18
| | | | | | * gnu/packages/wm.scm (menumaker): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: xf86-input-evdev: Update to 2.10.5.Marius Bakke2017-01-18
| | | | * gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.5.
* gnu: xf86-video-r128: Update to 6.10.2.Marius Bakke2017-01-18
| | | | * gnu/packages/xorg.scm (xf86-video-r128): Update to 6.10.2.
* gnu: xf86-video-savage: Update to 2.3.9.Marius Bakke2017-01-18
| | | | * gnu/packages/xorg.scm (xf86-video-savage): Update to 2.3.9.
* gnu: xf86-video-trident: Update to 1.3.8.Marius Bakke2017-01-18
| | | | * gnu/packages/xorg.scm (xf86-video-trident): Update to 1.3.8.
* gnu: xf86-video-glint: Update to 1.2.9.Marius Bakke2017-01-18
| | | | | | | * gnu/packages/xorg.scm (xf86-video-glint): Update to 1.2.9. [source]: Remove upstreamed patch. * gnu/packages/patches/xf86-video-glint-remove-mibstore.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: xf86-video-nv: Update to 2.1.21.Marius Bakke2017-01-18
| | | | | | | * gnu/packages/xorg.scm (xf86-video-nv): Update to 2.1.21. [source]: Remove upstreamed patch. * gnu/packages/patches/xf86-video-nv-remove-mibstore.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: xf86-video-siliconmotion: Update to 1.7.9.Marius Bakke2017-01-18
| | | | * gnu/packages/xorg.scm (xf86-video-siliconmotion): Update to 1.7.9.
* gnu: xf86-video-mga: Update to 1.6.5.Marius Bakke2017-01-18
| | | | * gnu/packages/xorg.scm (xf86-video-mga): Update to 1.6.5.
* gnu: xf86-video-sis: Update to 0.10.9.Marius Bakke2017-01-18
| | | | * gnu/packages/xorg.scm (xf86-video-sis): Update to 0.10.9.
* gnu: xf86-video-tdfx: Update to 1.4.7.Marius Bakke2017-01-18
| | | | * gnu/packages/xorg.scm (xf86-video-tdfx): Update to 1.4.7.
* gnu: multiqc: Add python-nose to inputs.Ricardo Wurmus2017-01-18
| | | | | * gnu/packages/bioinformatics.scm (multiqc)[propagated-inputs]: Add python-nose.
* gnu: screen: Update to 4.5.0.Efraim Flashner2017-01-18
| | | | | * gnu/packages/screen.scm (screen): Update to 4.5.0. [home-page]: Use https.
* gnu: Add emacs-sx.ng02017-01-18
| | | | | | * gnu/packages/emacs.scm (emacs-sx): New variable. Signed-off-by: Alex Kost <alezost@gmail.com>
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