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* Merge branch 'core-updates'Ludovic Courtès2018-12-03
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| * gnu: rust: Remove flaky test.Danny Milosavljevic2018-12-02
| | | | | | | | | | * gnu/packages/rust.scm (rust-1.22)[arguments]<#:phases>[remove-flaky-test]: New phase.
| * gnu: openfoam: Adjust for glibc 2.28.Ludovic Courtès2018-12-02
| | | | | | | | | | * gnu/packages/simulation.scm (openfoam)[source](modules, snippet): New fields.
| * gnu: blender: Use newer ffmpeg.Efraim Flashner2018-11-30
| | | | | | | | | | | | | | | | * gnu/packages/graphics.scm (blender)[source]: Add patch for newer ffmpeg compatability. [inputs]: Replace ffmpeg-2.8 with ffmpeg. * gnu/packages/patches/blender-newer-ffmpeg.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
| * Merge branch 'master' into core-updatesMarius Bakke2018-11-29
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| * | gnu: kmscon: Don't invoke './configure' during bootstrap.Marius Bakke2018-11-29
| | | | | | | | | | | | | | | * gnu/packages/terminals.scm (kmscon)[arguments]: Change 'autogen.sh' phase to replace 'bootstrap' and set the $NOCONFIGURE environment variable.
| * | gnu: lirc: Build reproducibly.Ludovic Courtès2018-11-29
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/lirc-reproducible-build.patch: New file. * gnu/packages/lirc.scm (lirc)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
| * | gnu: rust: Shorten patch file name.Ludovic Courtès2018-11-29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This file name was too long to fit in a tar archive. * gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch: Rename to... * gnu/packages/patches/rust-reproducible-builds.patch: ... this. * gnu/packages/rust.scm (rust-1.27, rust): Adjust accordingly. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
| * | gnu: libbonobo: Build sequentially.Ludovic Courtès2018-11-29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | See <https://berlin.guixsd.org/log/5mr1fyac5kyz41zwmnf4b0wm7vl42ryv-libbonobo-2.32.1> for an example of a parallel build failure: CCLD echo-client-2 CCLD bonobo-echo-2 ld: libEcho.a(Bonobo_Sample_Echo-stubs.o): in function `Bonobo_Sample_Echo_echo': /tmp/guix-build-libbonobo-2.32.1.drv-0/libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-stubs.c:12: undefined reference to `Bonobo_Sample_Echo__iinterface' ld: /tmp/guix-build-libbonobo-2.32.1.drv-0/libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-stubs.c:12: undefined reference to `Bonobo_Sample_Echo__classid' ld: /tmp/guix-build-libbonobo-2.32.1.drv-0/libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-stubs.c:12: undefined reference to `_ORBIT_skel_small_Bonobo_Sample_Echo_echo' collect2: error: ld returned 1 exit status make[3]: *** [Makefile:488: echo-client-2] Error 1 * gnu/packages/gnome.scm (libbonobo)[arguments]: Add #:parallel-build?.
| * | gnu: orbit2: Specify upstream name.Ludovic Courtès2018-11-27
| | | | | | | | | | | | * gnu/packages/gnome.scm (orbit2)[properties]: New field.
| * | gnu: orbit2: Do not build static libraries.Ludovic Courtès2018-11-27
| | | | | | | | | | | | | | | * gnu/packages/gnome.scm (orbit2)[arguments]: Add "--disable-static" to #:configure-flags.
| * | gnu: mono: Make build reproducible.Danny Milosavljevic2018-11-27
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/mono-mdoc-timestamping.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mono.scm (mono)[source]: Use patch. [arguments]<#:phases>[make-reproducible]: New phase. <#:phases>[set-env]: Set SOURCE_DATE_EPOCH.
| * | gnu: mono: End phase with #t.Danny Milosavljevic2018-11-26
| | | | | | | | | | | | * gnu/packages/mono.scm (mono)[arguments]<#:phases>[set-env]: End with #t.
| * | gnu: adb: Fix build with glibc 2.28.Danny Milosavljevic2018-11-26
| | | | | | | | | | | | | | | | | | * gnu/packages/android.scm (android-platform-version): Use "7.1.2_r36". (android-platform-system-core): Update sha256 hash value (for 7.1.2_r36). (android-platform-bionic): Update sha256 hash value (for 7.1.2_r36).
| * | gnu: python-tblib: Use invoke.Danny Milosavljevic2018-11-26
| | | | | | | | | | | | | | | * gnu/packages/python.scm (python-tblib)[arguments]<#:phases>[check]: Use invoke.
| * | gnu: mono: Fix build with glibc 2.28.Danny Milosavljevic2018-11-26
| | | | | | | | | | | | * gnu/packages/mono.scm (mono)[arguments]<#:phases>[fix-includes]: New phase.
| * | gnu: ams-lv2: Always return #t from phase remove-sse-flags.Björn Höfling2018-11-26
| | | | | | | | | | | | | | | * gnu/packages/music.scm (ams-lv2)[arguments]: Use '(unless' instead of '(when (not'. Return with #t as last value from phase 'remove-sse-flags'.
| * | gnu: ams-lv2: Fix error in configure phase.Björn Höfling2018-11-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | Python 3.7 introduced PEP 479. That raised an error in an old waf-script included in the package. An updated waf-script was found in a newer commit that fixes the problem. * gnu/packages/music.scm (ams-lv2)[sources]: Update, using two more commits than version 1.2.1.
| * | gnu: aegisub: Fix build.Björn Höfling2018-11-25
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/aegisub-boost68.patch: New file * gnu/local.mk: Add it. * gnu/packages/video.scm (aegisub)[source]: Use patch.
| * | gnu: randomjungle: Do not build static binaries.Marius Bakke2018-11-25
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/randomjungle-disable-static-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/machine-learning.scm (randomjungle)[source](patches): Add it. [arguments]: Add "--disable-static" to #:configure-flags.
| * | gnu: python2-gevent: Fix compilation.Ludovic Courtès2018-11-25
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-gevent)[arguments]: Add (ice-9 match) to #:modules. In 'do-not-use-bundled-sources' phase, use 'scandir' to avoid hard-coded include directory name. [properties]: New field. (python2-gevent): Add 'native-inputs' and 'arguments' fields.
| * | gnu: libreoffice: Fix build with MDDS 1.4 and Orcus 0.14.Marius Bakke2018-11-25
| | | | | | | | | | | | | | | | | | * gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add two patches from Arch Linux. [arguments]: Add substitutions so the libraries are found.
| * | gnu: libetonyek: Fix build against mdds 1.4.Marius Bakke2018-11-25
| | | | | | | | | | | | | | | * gnu/packages/libreoffice.scm (libetonyek)[arguments]: Add phase to substitute mdds version. Adjust #:configure-flags accordingly.
| * | gnu: orcus: Update to 0.14.1.Marius Bakke2018-11-25
| | | | | | | | | | | | * gnu/packages/libreoffice.scm (orcus): Update to 0.14.1.
| * | gnu: ixion: Update to 0.14.1.Marius Bakke2018-11-25
| | | | | | | | | | | | * gnu/packages/libreoffice.scm (ixion): Update to 0.14.1.
| * | gnu: mdds: Update to 1.4.3.Marius Bakke2018-11-25
| | | | | | | | | | | | * gnu/packages/boost.scm (mdds): Update to 1.4.3.
| * | gnu: python2-numpy@1.8: Provide "python2-nose".Marius Bakke2018-11-25
| | | | | | | | | | | | | | | | | | Also remove other native-inputs since they appear unnecessary. * gnu/packages/python.scm (python2-numpy-1.8)[native-inputs]: New field.
| * | gnu: diffoscope: Update to 106.Julien Lepiller2018-11-25
| | | | | | | | | | | | * gnu/packages/package-management.scm (diffoscope): Update to 106.
| * | gnu: diffoscope: Fix test failure.Julien Lepiller2018-11-25
| | | | | | | | | | | | | | | * gnu/packages/package-management.scm (diffoscope)[arguments]: Remove failing Berkeley DB test.
| * | Merge branch 'master' into core-updatesMarius Bakke2018-11-24
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| * | | gnu: python-pika: Update to 0.12.0.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-pika): Update to 0.12.0.
| * | | gnu: bless: Adjust to zlib static output.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (bless)[inputs]: Add ZLIB:STATIC. [arguments]: Adjust #:make-flags accordingly.
| * | | gnu: adb: Fix FTBFS with Glibc 2.28.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | * gnu/packages/android.scm (adb)[arguments]: Add phase 'glibc-compat'.
| * | | gnu: python2-fasteners: Propagate python2-futures.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-fasteners)[properties]: New field. (python2-fasteners)[propagated-inputs]: Add PYTHON2-FUTURES.
| * | | gnu: python2-futures: Update to 3.2.0.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | * gnu/packages/python.scm (python2-futures): Update to 3.2.0.
| * | | gnu: python2-futures: Disable tests.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | * gnu/packages/python.scm (python2-futures)[arguments]: Set #:test? #f.
| * | | gnu: python-pycurl: Fix FTBFS from 7b844100464633db5455a3931858bb57c9e529e6.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python-web.scm (python-pycurl)[arguments]: Add phase 'configure-tls-backend'.
| * | | gnu: ledger: Fix build with Boost >= 1.68.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | * gnu/packages/finance.scm (ledger)[arguments]: Add phase 'boost-compat.
| * | | gnu: mosaik: Fix FTBFS from b90289dadc8ee15848ce911a2bdcd3ae8302d58c.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (mosaik)[inputs]: Add ZLIB:STATIC.
| * | | gnu: python-cheetah: Update to 3.1.0.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python2-cheetah): Rename to ... (python-cheetah): ... this. Update to 3.1.0. [arguments]: Add custom 'check' phase. [propagated-inputs]: Change PYTHON2-MARKDOWN to PYTHON-MARKDOWN. (python2-cheetah): Rewrite in terms of PACKAGE-WITH-PYTHON2.
| * | | gnu: python2-cheetah: Update home page.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-cheetah)[home-page]: Update to current.
| * | | gnu: rust: Don't depend on 'git'.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/rust.scm (rust-1.19)[inputs]: Remove GIT. (rust-1.20)[arguments]: Disable Cargo tests that require git. (rust-1.26)[arguments]: Likewise.
| * | | gnu: mariadb: Update to 10.1.37 [security fixes].Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156, and CVE-2018-3251. See <https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details. * gnu/packages/databases.scm (mariadb): Update to 10.1.37.
| * | | Merge branch 'master' into core-updatesMarius Bakke2018-11-24
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| * | | | gnu: pt-scotch, pt-scotch32: Add Open MPI setup phase.Ludovic Courtès2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of 'system*'. Add 'mpi-setup' phase. (pt-scotch32)[arguments]: Likewise.
| * | | | gnu: pigx-scrnaseq: Use latest snakemake.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-4 with snakemake.
| * | | | gnu: pigx-bsseq: Use latest snakemake.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake-4 with snakemake.
| * | | | gnu: pigx-chipseq: Use latest snakemake.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake-4 with snakemake.
| * | | | gnu: python-gevent: Update to 1.3.7.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-gevent): Update to 1.3.7. [arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources". [propagated-inputs]: Add python-objgraph.
| * | | | gnu: Add python-objgraph.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-objgraph): New variable.
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