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* gnu: automake: Support cross-build.Jan (janneke) Nieuwenhuizen2020-04-23
| | | | | | | | | | Automake does not cross-built properly: it lacks the concept of <tool>-for-build. It runs the host `autoconf' during build. * gnu/packages/autotools.scm (automake)[inputs]: Add autoconf, bash-minimal and perl. To avoid triggering a rebuild, do this while cross-compiling only. [arguments]: When cross-building, add `patch-non-shebang-references' phase to substitute autoconf and perl.
* gnu: autoconf: Support cross-build.Jan (janneke) Nieuwenhuizen2020-04-23
| | | | | | | | | | Autoconf does not cross-built properly: it lacks the concept of <tool>-for-build. It runs the host `autom4te' (a perl script) during build. * gnu/packages/autotools.scm (autoconf)[inputs]: Add bash-minimal, perl, and m4. To avoid triggering a rebuild, do this while cross-compiling only. [arguments]: When cross-building, add `patch-non-shebang-references' phase to substitute the host bash, m4 and perl.
* gnu: qt@4: Hide the default GCC from CPLUS_INCLUDE_PATH.Marius Bakke2020-04-22
| | | | | | * gnu/packages/qt.scm (qt-4)[native-inputs]: Distinguish GCC-5. [arguments]: Add phase to hide the default GCC from CPLUS_INCLUDE_PATH to fix conflicting headers.
* gnu: python-jedi: Fix test failure with Python 3.8.Marius Bakke2020-04-22
| | | | | * gnu/packages/python-xyz.scm (python-jedi)[arguments]: Add phase 'adjust-test-for-python-3.8'.
* gnu: python-pyrsistent: Fix build with Pytest 5.Marius Bakke2020-04-22
| | | | * gnu/packages/python-xyz.scm (python-pyrsistent)[arguments]: New field.
* gnu: GNOME: Only include Eye of GNOME on x86_64-linux.Marius Bakke2020-04-22
| | | | * gnu/packages/gnome.scm (gnome)[propagated-inputs]: Conditionally add EOG.
* gnu: tar: Disable troublesome tests on the Hurd.Jan (janneke) Nieuwenhuizen2020-04-20
| | | | | | | | | | | | | | | | | | | The sparse03.at test apparently freezes the Hurd; messages on the console: 165: listing sparse files bigger than 2^33 ext2fs: device:hd0s1: warning: bit already cleared for block 245780 ext2fs: device:hd0s1: warning: bit already cleared for block 245781 ext2fs: device:hd0s1: warning: bit already cleared for block 245782 ... ext2fs: BUG: unexpected fault on disk image ... err 0xa ext2fs: disk-pager.c:98: fault_handler: Assertion 'err' failed. the other tests just fail. * gnu/packages/base.scm (tar)[arguments]: When compiling for the Hurd, skip `sparse' and failing tests.
* gnu: coreutils: Mark three more tests XFAIL on the Hurd.Jan (janneke) Nieuwenhuizen2020-04-20
| | | | * gnu/packages/base.scm (coreutils)[arguments]: Add three more failing tests.
* gnu: cmake: Remove "libuv" dependency for the Hurd.Jan (janneke) Nieuwenhuizen2020-04-20
| | | | | * gnu/packages/cmake.scm (cmake-bootstrap)[inputs]: When compiling for the Hurd, remove "libuv".
* gnu: tls: Remove datefudge and disable tests on the Hurd.Jan (janneke) Nieuwenhuizen2020-04-20
| | | | | | * gnu/packages/tls.scm (gnutls)[arguments]: When compiling for the Hurd, disable tests. [native-inputs]: When compiling for the Hurd, do not include datefudge.
* gnu: perl: Actually produce a host perl when cross-compiling.Jan (janneke) Nieuwenhuizen2020-04-20
| | | | | | | | * gnu/packages/patches/perl-cross.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/perl.scm (perl)[native-inputs]: When cross-compiling, add `perl-cross' input and perl-cross.patch. [arguments]: When cross-compiling, use them to produce binary for host.
* gnu: linphoneqt: Add the missing ring sound files.Maxim Cournoyer2020-04-19
| | | | | * gnu/packages/linphone.scm (linphoneqt)[phases]: Add an 'extend-shared-resources phase.
* Merge branch 'master' into core-updatesMarius Bakke2020-04-19
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| * gnu: emacs-org-superstar: Update to 1.2.1.Nicolas Goaziou2020-04-19
| | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-org-superstar): Update to 1.2.1.
| * gnu: Add notification-daemon.Raghav Gururajan2020-04-19
| | | | | | | | | | | | * gnu/packages/gnome.scm (notification-daemon): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add trezord-udev-rules.Martin Becze2020-04-19
| | | | | | | | | | | | * gnu/packages/finance.scm (trezord-udev-rules): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * installer: connman: Fix Wifi connection.Mathieu Othacehe2020-04-19
| | | | | | | | | | | | | | | | | | | | | | Issue reported by SergioBG here: https://lists.gnu.org/archive/html/bug-guix/2020-04/msg00432.html. Due to default buffering mode, the installer was reading from the pipe without having actually written a command before. * gnu/installer/connman.scm (connman-connect-with-auth): Set pipe buffering mode to 'line.
| * services: sddm: Have sddm provision xorg-server.base-for-series-3598Efraim Flashner2020-04-19
| | | | | | | | | | * gnu/services/sddm.scm (sddm-shepherd-service)[shepherd-service]: Have sddm provision 'xorg-server like the other display managers.
| * gnu: python-cython: Update to 0.29.16.base-for-series-3597base-for-series-3596base-for-series-3595Efraim Flashner2020-04-18
| | | | | | | | * gnu/packages/python-xyz.scm (python-cython): Update to 0.29.16.
| * gnu: qrcodegen-cpp: Update to 1.6.0.Efraim Flashner2020-04-18
| | | | | | | | * gnu/packages/aidc.scm (qrcodegen-cpp): Update to 1.6.0.
| * gnu: vim-asyncrun: Update to 2.7.5.Efraim Flashner2020-04-18
| | | | | | | | * gnu/packages/vim.scm (vim-asyncrun): Update to 2.7.5.
| * gnu: libavif: Update to 0.7.1.Leo Famulari2020-04-18
| | | | | | | | | | * gnu/packages/image.scm (libavif): Update to 0.7.1. [arguments]: Run the test suite.
| * gnu: Add node-semver.Giacomo Leidi2020-04-18
| | | | | | | | | | | | * gnu/packages/node-xyz.scm (node-semver): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * gnu: chess: Update to 6.2.6.Efraim Flashner2020-04-18
| | | | | | | | * gnu/packages/games.scm (chess): Update to 6.2.6.
| * gnu: chess: Set upstream name and ftp-directory.Efraim Flashner2020-04-18
| | | | | | | | | | * gnu/packages/games.scm (chess)[properties]: New field. Add upstream-name and ftp-directory.
| * installer: Fix backtrace display.Mathieu Othacehe2020-04-18
| | | | | | | | | | | | | | | | | | | | The 'syslog' macro cannot be resolved in the pre-unwind-handler context. Failed to resolve 'syslog' in this context resulted in the swallowing of all installation errors. Fixes 5c04b00cf463a543b8ffc9eb55991f6b4cc145dd. * gnu/installer.scm (installer-program): Use (gnu installer utils) module.
| * gnu: Use the test-only time zone database where appropriate.Leo Famulari2020-04-17
| | | | | | | | | | | | | | | | | | | | * gnu/packages/backup.scm (duplicity)[inputs]: Remove tzdata. [native-inputs]: Add tzdata-for-tests. * gnu/packages/finance.scm (ledger): Likewise. * gnu/packages/compression.scm (lhasa)[native-inputs]: Use tzdata-for-tests. * gnu/packages/cran.scm (r-rstan)[native-inputs]: Likewise. * gnu/packages/databases.scm (mongodb)[native-inputs]: Likewise. * gnu/packages/kde-frameworks.scm (kdelibs4support)[native-inputs]: Likewise.
| * gnu: trezord: Update to 2.0.29.Martin Becze2020-04-17
| | | | | | | | | | | | * gnu/packages/finance.scm (trezord): Update to 2.0.29. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: fulcrum: Update to 1.1.0TomZ2020-04-17
| | | | | | | | | | | | * gnu/packages/finance.scm (fulcrum): Update to 1.1.0 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * services: account: Have 'user-processes' depend on 'user-homes'.Ludovic Courtès2020-04-17
| | | | | | | | | | | | | | | | | | Until now, 'user-homes' happened to start right after 'user-processes' and before services that depend on a home directory but the dependency was not explicit. This addresses it. * gnu/system/shadow.scm (account-service-type): Extend USER-PROCESSES-SERVICE-TYPE.
| * services: Move 'user-processes' to (gnu services shepherd).Ludovic Courtès2020-04-17
| | | | | | | | | | | | | | * gnu/services/base.scm (%do-not-kill-file) (user-processes-shepherd-service, user-processes-service-type): Move to... * gnu/services/shepherd.scm: ... here.
| * gnu: linux-libre: Update to 5.4.33.Mark H Weaver2020-04-17
| | | | | | | | | | * gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.33. (linux-libre-5.4-pristine-source): Update hash.
| * gnu: linux-libre@5.6: Update to 5.6.5.Mark H Weaver2020-04-17
| | | | | | | | | | * gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.5. (linux-libre-5.6-pristine-source): Update hash.
| * gnu: linux-libre@4.19: Update to 4.19.116.Mark H Weaver2020-04-17
| | | | | | | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.116. (linux-libre-4.19-pristine-source): Update hash.
| * gnu: ungoogled-chromium: Update to 81.0.4044.113-0.b484ad4 [fixes ↵Marius Bakke2020-04-17
| | | | | | | | | | | | | | CVE-2020-6457]. * gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.113. (%chromium-origin): Update hash.
| * gnu: python-pygenometracks: Update to 3.3.Ricardo Wurmus2020-04-17
| | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.3. [arguments]: Add phase "relax-requirements"; disable tests. [propagated-inputs]: Remove python-configparser and python-hicexplorer; add python-gffutils, python-pysam, and python-tqdm.
| * gnu: Add python-hicmatrix.Ricardo Wurmus2020-04-17
| | | | | | | | * gnu/packages/bioinformatics.scm (python-hicmatrix): New variable.
| * gnu: python-cooler: Update to 0.8.7.Ricardo Wurmus2020-04-17
| | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7. [propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and python-simplejson. [native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add python-pytest.
| * gnu: python-pybigwig: Update to 0.3.17.Ricardo Wurmus2020-04-17
| | | | | | | | * gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.17.
| * gnu: python-tables: Update to 3.6.1.Ricardo Wurmus2020-04-17
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-tables): Update to 3.6.1. [arguments]: Adjust use-gcc phase.
| * gnu: python-podcastparser: Run tests.Pierre Langlois2020-04-17
| | | | | | | | | | | | | | | | * gnu/packages/gpodder.scm (python-podcastparser)[native-inputs]: Add python-coverage. [arguments]: Replace 'check phase and invoke "nosetests". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: gpodder: Run tests.Pierre Langlois2020-04-17
| | | | | | | | | | | | | | | | * gnu/packages/gpodder.scm (gpodder)[native-inputs]: Add python-coverage and python-minimock. [arguments]: Replace the 'check phase and invoke "make unittest". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: gpodder: Update to 3.10.15.Pierre Langlois2020-04-17
| | | | | | | | | | | | * gnu/packages/gpodder.scm (gpodder): Update to 3.10.15. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: dovecot: Add libunwind input for arm.Pierre Langlois2020-04-17
| | | | | | | | | | | | * gnu/packages/mail.scm (dovecot)[inputs]: Add libunwind when targetting arm. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: khard: Move propagated-inputs to inputs.Efraim Flashner2020-04-17
| | | | | | | | | | | | | | | | | | As a package one would install we can rely on wrapping the package and not propagating inputs to make it work correctly. * gnu/packages/mail.scm (khard)[propagated-inputs]: Move all python packages ... [inputs]: ... to here.
| * gnu: khal: Move propagated inputs to inputs.Efraim Flashner2020-04-17
| | | | | | | | | | | | | | | | | | As a package one would install we can rely on wrapping the package and not propagating inputs to make it work correctly. * gnu/packages/calendar.scm (khal)[propagated-inputs]: Move all python packages... [inputs]: ... to here.
| * gnu: khal: Fix build with python-urwid-2.1.0.Efraim Flashner2020-04-17
| | | | | | | | | | * gnu/packages/calendar.scm (khal)[source]: Download upstream patch to fix compatibility with newer python-urwid.
| * gnu: diffoscope.scm: Add missing import.Christopher Baines2020-04-17
| | | | | | | | | | | | This follows on from 2d9886f7e8838d6aeb0cfb20a2a49fc7d8fb233c. * gnu/packages/diffoscope.scm: Import (gnu packages maths).
| * gnu: diffoscope: Update to 141.Vagrant Cascadian2020-04-16
| | | | | | | | | | | | * gnu/packages/diffoscope (diffoscope): Update to 141. [arguments]: Add phase add-known-tools. [native-inputs]: Add hdf5.
| * gnu: disorderfs: Update to 0.5.9.Vagrant Cascadian2020-04-16
| | | | | | | | * gnu/packages/file-systems (disorderfs): Update to 0.5.9.
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