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* gnu: libressl: Update to 2.2.5.Andreas Enge2016-01-26
| | | | * gnu/packages/tls.scm (libressl): Update to 2.2.5.
* gnu: nginx: Update to 1.8.1 [fixes CVE-2016-{0742,0746,0747}].Leo Famulari2016-01-26
| | | | * gnu/packages/web.scm (nginx): Update to 1.8.1.
* gnu: alsa-modular-synth: Update to 2.1.2.Ricardo Wurmus2016-01-26
| | | | * gnu/packages/audio.scm (alsa-modular-synth): Update to 2.1.2.
* gnu: Add ruby-ttfunk.Ben Woodcroft2016-01-26
| | | | * gnu/packages/ruby.scm (ruby-ttfunk): New variable.
* gnu: Add ruby-ascii85.Ben Woodcroft2016-01-26
| | | | * gnu/packages/ruby.scm (ruby-ascii85): New variable.
* gnu: Add ruby-afm.Ben Woodcroft2016-01-26
| | | | * gnu/packages/ruby.scm (ruby-afm): New variable.
* gnu: Add ruby-rc4.Ben Woodcroft2016-01-26
| | | | * gnu/packages/ruby.scm (ruby-rc4): New variable.
* gnu: Add ruby-hashery.Ben Woodcroft2016-01-26
| | | | * gnu/packages/ruby.scm (ruby-hashery): New variable.
* gnu: Add ruby-rubytest-cli.Ben Woodcroft2016-01-26
| | | | * gnu/packages/ruby.scm (ruby-rubytest-cli): New variable.
* gnu: Add ruby-lemon.Ben Woodcroft2016-01-26
| | | | * gnu/packages/ruby.scm (ruby-lemon): New variable.
* gnu: Add ruby-ae.Ben Woodcroft2016-01-26
| | | | * gnu/packages/ruby.scm (ruby-ae): New variable.
* gnu: Add ruby-qed.Ben Woodcroft2016-01-26
| | | | * gnu/packages/ruby.scm (ruby-qed): New variable.
* gnu: Add ruby-brass.Ben Woodcroft2016-01-26
| | | | * gnu/packages/ruby.scm (ruby-brass): New variable.
* gnu: Add ruby-rubytest.Ben Woodcroft2016-01-26
| | | | * gnu/packages/ruby.scm (ruby-rubytest): New variable.
* gnu: sra-tools: Update to 2.5.7.Ben Woodcroft2016-01-26
| | | | * gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.7.
* gnu: ncbi-vdb: Update to 2.5.7.Ben Woodcroft2016-01-26
| | | | gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.7.
* gnu: ngs-sdk: Update to 1.2.3.Ben Woodcroft2016-01-26
| | | | gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.3.
* gnu: aspell-dict-en: Update to 2016.01.19-0.Alex Kost2016-01-25
| | | | * gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.01.19-0.
* gnu: Add python-efl.Efraim Flashner2016-01-25
| | | | * gnu/packages/enlightenment.scm (python-efl, python2-efl): New variables.
* gnu: cmocka: New variable.Efraim Flashner2016-01-25
| | | | * gnu/packages/check.scm (cmocka): New variable.
* gnu: Add pixz.Ben Woodcroft2016-01-25
| | | | * gnu/packages/compression.scm (pixz): New variable.
* gnu: grue-hunter: Use 'https' URL.Ludovic Courtès2016-01-25
| | | | * gnu/packages/grue-hunter.scm (grue-hunter): Use 'https' URL.
* gnu: Add sortmerna.Ben Woodcroft2016-01-25
| | | | * gnu/packages/bioinformatics.scm (sortmerna): New variable.
* gnu: calibre: Update to 2.49.0.Andreas Enge2016-01-24
| | | | * gnu/packages/ebook.scm (calibre): Update to 2.49.0.
* gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3.Ricardo Wurmus2016-01-24
| | | | | * gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable building libstdc++-v3 and enable building C++ compiler.
* gnu: Add Qtractor.Ricardo Wurmus2016-01-24
| | | | * gnu/packages/music.scm (qtractor): New variable.
* gnu: yoshimi: Update to 1.3.8.2.Ricardo Wurmus2016-01-24
| | | | * gnu/packages/music.scm (yoshimi): Update to 1.3.8.2.
* gnu: privoxy: Update to 3.0.24.Efraim Flashner2016-01-24
| | | | * gnu/packages/tor.scm (privoxy): Update to 3.0.24.
* gnu: tor: Update to 0.2.7.6.Efraim Flashner2016-01-24
| | | | * gnu/packages/tor.scm (tor): Update to 0.2.7.6.
* gnu: myrepos: Update to 1.20160123.Efraim Flashner2016-01-24
| | | | * gnu/packages/version-control.scm (myrepos): Update to 1.20160123.
* gnu: nano: Update to 2.5.1.Efraim Flashner2016-01-24
| | | | * gnu/packages/nano.scm (nano): Update to 2.5.1.
* build: container: Make 'unprivileged-user-namespace-supported?' more robust.Mark H Weaver2016-01-23
| | | | | | * gnu/build/linux-container.scm (unprivileged-user-namespace-supported?): Only read and check the first character, to cope with a possible newline in the (pseudo-)file.
* gnu: letsencrypt and acme: Update to 0.2.0.Leo Famulari2016-01-23
| | | | | | | These packages should be updated together. * gnu/packages/tls.scm (letsencrypt): Update to 0.2.0. (acme): Update to 0.2.0.
* gnu: claws-mail: Update to 3.13.2.Efraim Flashner2016-01-23
| | | | * gnu/packages/mail.scm (claws-mail): Update to 3.13.2.
* gnu: Add cufflinks.Ricardo Wurmus2016-01-23
| | | | * gnu/packages/bioinformatics.scm (cufflinks): New variable.
* gnu: Add TopHat.Ricardo Wurmus2016-01-23
| | | | | | * gnu/packages/bioinformatics.scm (tophat): New variable. * gnu/packages/patches/tophat-build-with-later-seqan.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: star: Update to 2.5.1b.Ricardo Wurmus2016-01-23
| | | | | | | * gnu/packages/bioinformatics.scm (star): Update to 2.5.1b. [source]: Remove bundled htslib sources and pre-built binaries. [arguments]: Add phase "do-not-use-bundled-htslib". [inputs]: Add "htslib".
* gnu: star: Use "modify-phases" syntax.Ricardo Wurmus2016-01-23
| | | | | * gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phases" syntax.
* gnu: fuse: Update to 2.9.5 [fixes CVE-2016-1233].Efraim Flashner2016-01-22
| | | | * gnu/packages/linux.scm (fuse): Update to 2.9.5.
* gnu: american-fuzzy-lop: Update to 1.96b.Eric Bavier2016-01-21
| | | | | * gnu/packages/debug.scm (american-fuzzy-lop): Update to 1.96b. [arguments]: Create symbolic link to custom qemu, rather than copying.
* gnu: american-fuzzy-lop: Fix qemu configure flags.Eric Bavier2016-01-21
| | | | | | | Fixes regression introduced in 06da1a6. * gnu/packages/debug.scm (american-fuzzy-lop)[qemu]: Override inherited #:configure-flags.
* gnu: Add iftop.Leo Famulari2016-01-21
| | | | * gnu/packages/admin.scm (iftop): New variable.
* Revert "gnu: Add iftop."Leo Famulari2016-01-21
| | | | This reverts commit 45da8c6dd10c93280277d17463d09fce6a25afe9.
* gnu: Add iftop.Leo Famulari2016-01-21
| | | | * gnu/packages/admin.scm (iftop): New variable.
* system: grub: Search root device by label or UUID if possible.Ludovic Courtès2016-01-22
| | | | | | | | | | | | | | | | | | Fixes <http://bugs.gnu.org/22281>. Reported by Christopher Allan Webber <cwebber@dustycloud.org>. * gnu/system/grub.scm (eye-candy): Add 'root-fs' parameter. Replace 'search --file' command in the output with whatever 'grub-root-search' returns. (grub-root-search): New procedure. (grub-configuration-file): Add 'store-fs' parameter. Use 'grub-root-search' instead of hard-coded 'search --file' commands. * gnu/system.scm (store-file-system, operating-system-store-file-system): New procedures. (operating-system-grub.cfg): Use it, and adjust call to 'grub-configuration-file'. * tests/system.scm: New file. * Makefile.am (SCM_TESTS): Add it.
* gnu: ffmpeg: Update to 2.8.5.Mark H Weaver2016-01-21
| | | | * gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
* gnu: gajim: Update to 0.16.5 [fixes CVE-2015-8688].Mark H Weaver2016-01-21
| | | | | * gnu/packages/messaging.scm (gajim): Update to 0.16.5. [arguments]: Disable tests.
* gnu: bind-utils: Build and install "nsupdate".Ricardo Wurmus2016-01-21
| | | | | * gnu/packages/dns.scm (bind-utils)[arguments]: Build and install "nsupdate" executable.
* gnu: bind-utils: Generalize "build" and "install" phases.Ricardo Wurmus2016-01-21
| | | | | * gnu/packages/dns.scm (bind-utils)[arguments]: Generalize "build" and "install" phases.
* gnu: bind-utils: Use "modify-phases" syntax.Ricardo Wurmus2016-01-21
| | | | * gnu/packages/dns.scm (bind-utils): Use "modify-phases" syntax.
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