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* gnu: Add s6-networking.Eric Le Bihan2016-07-29
| | | | | | | * gnu/packages/skarnet.scm (s6-networking): New variable. Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add s6-dns.Eric Le Bihan2016-07-29
| | | | | | | * gnu/packages/skarnet.scm (s6-dns): New variable. Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add s6.Eric Le Bihan2016-07-29
| | | | | | | * gnu/packages/skarnet.scm (s6): New variable. Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: execline: Update to 2.1.5.0.Eric Le Bihan2016-07-29
| | | | | | | * gnu/packages/skarnet.scm (execline): Update to 2.1.5.0. Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: skalibs: Update to 2.3.10.0.Eric Le Bihan2016-07-29
| | | | | | | * gnu/packages/skarnet.scm (skalibs): Update to 2.3.10.0. Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add stellarium.Danny Milosavljevic2016-07-29
| | | | | | | | * gnu/local.mk: Include gnu/packages/education.scm . * gnu/packages/education.scm: Add new file. * gnu/packages/education.scm (stellarium): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: spice-gtk: Propagate SPICE-PROTOCOL.Leo Famulari2016-07-29
| | | | | * gnu/packages/spice.scm (spice-gtk)[inputs]: Move SPICE-PROTOCOL to... [propagated-inputs]: ... here.
* gnu: usbredir: Propagate LIBUSB.Leo Famulari2016-07-29
| | | | | * gnu/packages/spice.scm (usbredir)[inputs]: Replace field with ... [propagated-inputs]: ... new field.
* gnu: guix: Add dependency on zlib.Ludovic Courtès2016-07-29
| | | | * gnu/packages/package-management.scm (guix-0.10.0)[inputs]: Add ZLIB.
* gnu: password-store: Wrap PATH.Alex Griffin2016-07-29
| | | | | | | | | * gnu/packages/password-utils.scm (password-store) [arguments]: Wrap PATH more thoroughly. [native-inputs]: Move getopt to inputs. [inputs]: Add sed. Signed-off-by: Mathieu Lirzin <mthl@gnu.org>
* gnu: perl-dbd-pg: Add description.Ludovic Courtès2016-07-29
| | | | | * gnu/packages/databases.scm (perl-dbd-pg)[description]: Add non-empty description.
* gnu: Sync GNU descriptions with upstream.Ludovic Courtès2016-07-29
| | | | | | | | | From 'guix lint -c gnu-description'. * gnu/packages/gnunet.scm (gnunet): Adjust description. * gnu/packages/marst.scm (marst): Likewise. * gnu/packages/maths.scm (c-graph): Likewise. * gnu/packages/networking.scm (macchanger): Likewise.
* gnu: Add sshpass.Nicolas Goaziou2016-07-29
| | | | | | * gnu/packages/ssh.scm (sshpass): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-beautifulsoup4: Update to 4.5.0.Leo Famulari2016-07-28
| | | | | * gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4): Update to 4.5.0.
* gnu: perl-devel-symdump: Update to 2.17.ng02016-07-28
| | | | | | * gnu/packages/perl.scm (perl-devel-symdump): Update to 2.17. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add virt-viewer.David Craven2016-07-28
| | | | | | * gnu/packages/spice.scm (virt-viewer): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add spice-vdagent.David Craven2016-07-28
| | | | | | * gnu/packages/spice.scm (spice-vdagent): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add spice.David Craven2016-07-28
| | | | | | * gnu/packages/spice.scm (spice): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add spice-gtk.David Craven2016-07-28
| | | | | | * gnu/packages/spice.scm (spice-gtk): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add spice-protocol.David Craven2016-07-28
| | | | | | * gnu/packages/spice.scm (spice-protocol): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add virglrenderer.David Craven2016-07-28
| | | | | | * gnu/packages/spice.scm (virglrenderer): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add usbredir.David Craven2016-07-28
| | | | | | | * gnu/packages/spice.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
* Revert "gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]."Leo Famulari2016-07-28
| | | | This reverts commit ae46cd0e4cfb1f06d099b2cda1f9e702e86c90e9.
* gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207].Mark H Weaver2016-07-28
| | | | | | | | | | | | * gnu/packages/patches/gd-CVE-2016-5766.patch, gnu/packages/patches/gd-CVE-2016-6128.patch, gnu/packages/patches/gd-CVE-2016-6132.patch, gnu/packages/patches/gd-CVE-2016-6214.patch, gnu/packages/patches/gd-fix-test-on-i686.patch: Delete files. * gnu/packages/patches/gd-fix-tests-on-i686.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/gd.scm (gd): Update to 2.2.3. [source]: Update patches field accordingly.
* gnu: commencement: 'guile-final' is now "hidden".Ludovic Courtès2016-07-28
| | | | | | | | | | | This way, we no longer have this annoying warning: $ guix build guile -n guix build: warning: ambiguous package specification `guile' guix build: warning: choosing guile-2.0.11 from gnu/packages/guile.scm:128:2 * gnu/packages/commencement.scm (guile-final): Use 'hidden-package'. * tests/packages.scm ("fold-packages, hidden package"): New test.
* packages: Add 'hidden-package'.Ludovic Courtès2016-07-28
| | | | | | * guix/packages.scm (hidden-package, hidden-package?): New procedures. * gnu/packages.scm (fold-packages): Filter out 'hidden-package?'. * tests/packages.scm ("hidden-package"): New test.
* gnu: Add asciinema.Alex Griffin2016-07-28
| | | | | | * gnu/packages/terminals.scm (asciinema): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: gnome: Propagate file-roller.Alex Griffin2016-07-28
| | | | | | * gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add file-roller. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: r-genomicfeatures: Update to 1.24.5.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.5.
* gnu: r-bsgenome: Update to 1.40.1.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1.
* gnu: r-iranges: Update to 2.6.1.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1.
* gnu: r-limma: Update to 3.28.17.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17.
* gnu: r-xvector: Update to 0.12.1.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1.
* gnu: r-genomicranges: Update to 1.24.2.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.2.
* gnu: r-annotationdbi: Update to 1.34.4.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.4.
* gnu: r-biocparallel: Update to 1.6.3.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3.
* gnu: r-biostrings: Update to 2.40.2.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2.
* gnu: r-summarizedexperiment: Update to 1.2.3.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.3.
* gnu: r-genomicalignments: Update to 1.8.4.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.4.
* gnu: r-rtracklayer: Update to 1.32.2.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2.
* gnu: r-genomeinfodb: Update to 1.8.3.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3.
* gnu: r-s4vectors: Update to 0.10.2.Ben Woodcroft2016-07-28
| | | | * gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2.
* gnu: mysql: Update to 5.7.13 [fixes CVE-2016-{3477,3521,3615,5440}].Leo Famulari2016-07-28
| | | | | | * gnu/packages/patches/mysql-fix-failing-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/databases.scm (mysql): Update to 5.7.13.
* gnu: the-silver-searcher: Update to 0.32.0.Tomáš Čech2016-07-28
| | | | * gnu/packages/code.scm(the-silver-searcher): Update to 0.32.0.
* gnu: imagemagick: Update to 6.9.5-3.Leo Famulari2016-07-27
| | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-3.
* gnu: mariadb: Update to 10.1.16.Leo Famulari2016-07-27
| | | | * gnu/packages/databases.scm (mariadb): Update to 10.1.16.
* gnu: calibre: Update to 2.63.0.Alex Griffin2016-07-27
| | | | | | | | | | | * gnu/packages/ebook.scm (calibre): Update to 2.63.0. [inputs]: Remove unnecessary imagemagick dependency. [phases]: Use modify-phases. * gnu/packages/patches/calibre-drop-unrar.patch: Update for new version. Signed-off-by: Roel Janssen <roel@gnu.org>
* system: Source /etc/environment before $HOME/.guix-profile/etc/profile.Carlos Sánchez de La Lama2016-07-27
| | | | | | | * gnu/system.scm (operating-system-etc-service) <profile>: Move sourcing of /etc/environment before that of $HOME/.guix-profile/etc/profile. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: krona-tools: Update to 2.7.Ben Woodcroft2016-07-27
| | | | | * gnu/packages/web.scm (krona-tools): Update to 2.7. [arguments]: Delete 'build' phase. Install new scripts.
* gnu: diamond: Update to 0.8.16.Ben Woodcroft2016-07-27
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16.
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