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* services: Move 'user-processes' to (gnu services shepherd).Ludovic Courtès2020-04-17
| | | | | | | * gnu/services/base.scm (%do-not-kill-file) (user-processes-shepherd-service, user-processes-service-type): Move to... * gnu/services/shepherd.scm: ... here.
* gnu: linux-libre: Update to 5.4.33.Mark H Weaver2020-04-17
| | | | | * gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.33. (linux-libre-5.4-pristine-source): Update hash.
* gnu: linux-libre@5.6: Update to 5.6.5.Mark H Weaver2020-04-17
| | | | | * gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.5. (linux-libre-5.6-pristine-source): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.116.Mark H Weaver2020-04-17
| | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.116. (linux-libre-4.19-pristine-source): Update hash.
* gnu: ungoogled-chromium: Update to 81.0.4044.113-0.b484ad4 [fixes ↵Marius Bakke2020-04-17
| | | | | | | CVE-2020-6457]. * gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.113. (%chromium-origin): Update hash.
* gnu: python-pygenometracks: Update to 3.3.Ricardo Wurmus2020-04-17
| | | | | | | * gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.3. [arguments]: Add phase "relax-requirements"; disable tests. [propagated-inputs]: Remove python-configparser and python-hicexplorer; add python-gffutils, python-pysam, and python-tqdm.
* gnu: Add python-hicmatrix.Ricardo Wurmus2020-04-17
| | | | * gnu/packages/bioinformatics.scm (python-hicmatrix): New variable.
* gnu: python-cooler: Update to 0.8.7.Ricardo Wurmus2020-04-17
| | | | | | | | * gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7. [propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and python-simplejson. [native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add python-pytest.
* gnu: python-pybigwig: Update to 0.3.17.Ricardo Wurmus2020-04-17
| | | | * gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.17.
* gnu: python-tables: Update to 3.6.1.Ricardo Wurmus2020-04-17
| | | | | * gnu/packages/python-xyz.scm (python-tables): Update to 3.6.1. [arguments]: Adjust use-gcc phase.
* gnu: python-podcastparser: Run tests.Pierre Langlois2020-04-17
| | | | | | | | * gnu/packages/gpodder.scm (python-podcastparser)[native-inputs]: Add python-coverage. [arguments]: Replace 'check phase and invoke "nosetests". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: gpodder: Run tests.Pierre Langlois2020-04-17
| | | | | | | | * gnu/packages/gpodder.scm (gpodder)[native-inputs]: Add python-coverage and python-minimock. [arguments]: Replace the 'check phase and invoke "make unittest". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: gpodder: Update to 3.10.15.Pierre Langlois2020-04-17
| | | | | | * gnu/packages/gpodder.scm (gpodder): Update to 3.10.15. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dovecot: Add libunwind input for arm.Pierre Langlois2020-04-17
| | | | | | * gnu/packages/mail.scm (dovecot)[inputs]: Add libunwind when targetting arm. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: khard: Move propagated-inputs to inputs.Efraim Flashner2020-04-17
| | | | | | | | | As a package one would install we can rely on wrapping the package and not propagating inputs to make it work correctly. * gnu/packages/mail.scm (khard)[propagated-inputs]: Move all python packages ... [inputs]: ... to here.
* gnu: khal: Move propagated inputs to inputs.Efraim Flashner2020-04-17
| | | | | | | | | As a package one would install we can rely on wrapping the package and not propagating inputs to make it work correctly. * gnu/packages/calendar.scm (khal)[propagated-inputs]: Move all python packages... [inputs]: ... to here.
* gnu: khal: Fix build with python-urwid-2.1.0.Efraim Flashner2020-04-17
| | | | | * gnu/packages/calendar.scm (khal)[source]: Download upstream patch to fix compatibility with newer python-urwid.
* gnu: diffoscope.scm: Add missing import.Christopher Baines2020-04-17
| | | | | | This follows on from 2d9886f7e8838d6aeb0cfb20a2a49fc7d8fb233c. * gnu/packages/diffoscope.scm: Import (gnu packages maths).
* gnu: diffoscope: Update to 141.Vagrant Cascadian2020-04-16
| | | | | | * gnu/packages/diffoscope (diffoscope): Update to 141. [arguments]: Add phase add-known-tools. [native-inputs]: Add hdf5.
* gnu: disorderfs: Update to 0.5.9.Vagrant Cascadian2020-04-16
| | | | * gnu/packages/file-systems (disorderfs): Update to 0.5.9.
* gnu: python-jedi: Fix test failure on some file systems.base-for-series-3577Marius Bakke2020-04-17
| | | | | | | | | Reported by sirgazil on #guix. * gnu/packages/patches/python-jedi-sort-project-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-xyz.scm (python-jedi)[source](patches): Add it. [arguments]: Run tests more verbosely while at it.
* gnu: xournalpp: Remove outdated comments.Nicolas Goaziou2020-04-16
| | | | | * gnu/packages/pdf.scm (xournalpp): Remove outdated comments. This is a followup to 9cb2f28c5a737576ec28099d69aa35ff687e7778.
* gnu: wireshark: Update to 3.2.3.Nicolas Goaziou2020-04-16
| | | | * gnu/packages/networking.scm (wireshark): Update to 3.2.3.
* gnu: python-hy: Update to 0.18.0.Efraim Flashner2020-04-16
| | | | | | | | * gnu/packages/python-xyz.scm (python-hy): Update to 0.18.0. [arguments]: Make all phases return #t. [propagated-inputs]: Remove python-clint, python-fastentrypoints. Add python-colorama. (python2-hy): Remove variable.
* gnu: python-icalendar: Update to 4.0.5.Efraim Flashner2020-04-16
| | | | * gnu/packages/python-xyz.scm (python-icalendar): Update to 4.0.5.
* gnu: toot: Update to 0.26.0.Efraim Flashner2020-04-16
| | | | * gnu/packages/mastodon.scm (toot): Update to 0.26.0.
* gnu: python-urwid: Update to 2.1.0.Efraim Flashner2020-04-16
| | | | * gnu/packages/python-xyz.scm (python-urwid): Update to 2.1.0.
* gnu: python-vobject: Update to 0.9.6.1.Efraim Flashner2020-04-16
| | | | * gnu/packages/python-xyz.scm (python-vobject): Update to 0.9.6.1.
* gnu: python-pyicu: Update to 2.4.3.Efraim Flashner2020-04-16
| | | | | | * gnu/packages/python-xyz.scm (python-pyicu): Update to 2.4.3. [properties]: Remove field. (python2-pyicu): Remove package customizations.
* gnu: khard: Update to 0.16.1.Efraim Flashner2020-04-16
| | | | | | * gnu/packages/mail.scm (khard): Update to 0.16.1. [arguments]: Remove custom 'install-doc phase. Add 'install-completions phase.
* gnu: xournalpp: Update to 1.0.18.Nicolas Goaziou2020-04-16
| | | | * gnu/packages/pdf.scm (xournalpp): Update to 1.0.18.
* installer: Remove guile-newt definition.Mathieu Othacehe2020-04-16
| | | | | | This is no longer necessary since 0.0.2 release of Guile-Newt. * gnu/installer.scm (guile-newt): Remove variable.
* gnu: guile-newt: Update to 0.0.2.Mathieu Othacehe2020-04-16
| | | | | * gnu/packages/guile-xyz.scm (guile-newt): Update to 0.0.2, [source]: remove Guile 3.0 snippet.
* gnu: xfce4-taskmanager: Update to 1.2.3.Tobias Geerinckx-Rice2020-04-16
| | | | | * gnu/packages/xfce.scm (xfce4-taskmanager): Update to 1.2.3. [source]: Hard-code NAME.
* gnu: xfwm4: Update to 4.14.1.Tobias Geerinckx-Rice2020-04-16
| | | | | * gnu/packages/xfce.scm (xfwm4): Update to 4.14.1. [source]: Hard-code NAME.
* gnu: xfdesktop: Update to 4.14.2.Tobias Geerinckx-Rice2020-04-16
| | | | | * gnu/packages/xfce.scm (xfdesktop): Update to 4.14.2. [source]: Hard-code NAME.
* gnu: augeas: Use HTTPS home page.Tobias Geerinckx-Rice2020-04-16
| | | | * gnu/packages/augeas.scm (augeas)[home-page]: Use HTTPS.
* gnu: augeas: Update to 1.12.0.Tobias Geerinckx-Rice2020-04-16
| | | | * gnu/packages/augeas.scm (augeas): Update to 1.12.0.
* gnu: xterm: Update to 353.Tobias Geerinckx-Rice2020-04-16
| | | | * gnu/packages/xorg.scm (xterm): Update to 353.
* gnu: Add the GNU MDK.guy fleury iteriteka2020-04-16
| | | | | | * gnu/packages/education.scm (mdk): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add flwrap.Guillaume Le Vaillant2020-04-16
| | | | * gnu/packages/radio.scm (flwrap): New variable.
* gnu: Add flamp.Guillaume Le Vaillant2020-04-16
| | | | * gnu/packages/radio.scm (flamp): New variable.
* gnu: r-destiny: Add missing input.base-for-series-3561Ricardo Wurmus2020-04-16
| | | | * gnu/packages/bioconductor.scm (r-destiny)[native-inputs]: Add r-nbconvertr.
* gnu: r-bacon: Add missing input.Ricardo Wurmus2020-04-16
| | | | * gnu/packages/bioconductor.scm (r-bacon)[native-inputs]: Add r-knitr.
* gnu: r-bioassayr: Add missing input.Ricardo Wurmus2020-04-16
| | | | * gnu/packages/bioconductor.scm (r-bioassayr)[native-inputs]: Add r-knitr.
* gnu: Add r-nbconvertr.Ricardo Wurmus2020-04-16
| | | | * gnu/packages/cran.scm (r-nbconvertr): New variable.
* gnu: r-activepathways: Add missing input.Ricardo Wurmus2020-04-16
| | | | | * gnu/packages/bioconductor.scm (r-activepathways)[native-inputs]: Add r-knitr.
* gnu: r-dose: Add missing input.Ricardo Wurmus2020-04-16
| | | | * gnu/packages/bioconductor.scm (r-dose)[native-inputs]: Add r-knitr.
* gnu: r-ggextra: Add missing input.Ricardo Wurmus2020-04-16
| | | | * gnu/packages/cran.scm (r-ggextra)[native-inputs]: Add r-knitr.
* gnu: r-gdina: Add missing input.Ricardo Wurmus2020-04-16
| | | | * gnu/packages/cran.scm (r-gdina)[native-inputs]: Add r-knitr.
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