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* gnu: Add r-abn.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/cran.scm (r-abn): New variable.
* gnu: Add r-rjags.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/cran.scm (r-rjags): New variable.
* gnu: Add jags.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/statistics.scm (jags): New variable.
* gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.4.Ricardo Wurmus2018-11-13
| | | | | * gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.4.4.
* gnu: r-org-mm-eg-db: Update to 3.7.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.7.0.
* gnu: r-org-dm-eg-db: Update to 3.7.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.7.0.
* gnu: r-org-ce-eg-db: Update to 3.7.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.7.0.
* gnu: r-org-hs-eg-db: Update to 3.7.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.7.0.
* gnu: r-genomationdata: Update to 1.14.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.14.0.
* gnu: r-go-db: Update to 3.7.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-go-db): Update to 3.7.0.
* gnu: r-genomeinfodbdata: Update to 1.2.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.2.0.
* gnu: spice-vdagent: Fix typo in desktop file.Taegil Bae2018-11-13
| | | | | | | Fixes <https://bugs.gnu.org/33346>. * gnu/packages/spice.scm (spice-vdagent)[arguments]: Fix typo in 'patch-spice-vdagent.desktop' phase.
* gnu: ImageMagick: Update to 6.9.10-14.Alex Vong2018-11-14
| | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-14.
* gnu: libssh: Fetch source over HTTPS.Leo Famulari2018-11-13
| | | | * gnu/packages/ssh.scm (libssh)[source]: Use HTTPS URL.
* gnu: direnv: Build with Go 1.9.Leo Famulari2018-11-13
| | | | | * gnu/packages/shellutils.scm (direnv)[native-inputs]: Remove go. [inputs]: Add go-1.9.
* gnu: Poppler: Fix CVE-2018-19149.Leo Famulari2018-11-13
| | | | | | | | * gnu/packages/patches/poppler-CVE-2018-19149.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (poppler)[replacement]: New field. (poppler/fixed): New variable. (poppler-qt4, poppler-qt5): Use package/inherit.
* gnu: certbot, python-acme: Update to 0.28.0.Leo Famulari2018-11-13
| | | | * gnu/packages/tls.scm (certbot, python-acme): Update to 0.28.0.
* gnu: guix: Update to f5a2724.Ludovic Courtès2018-11-13
| | | | * gnu/packages/package-management.scm (guix): Update to f5a2724.
* services: nscd: Add 'invalidate' and 'statistics' actions.Ludovic Courtès2018-11-13
| | | | | | | | | | * gnu/services/base.scm (nscd-action-procedure, nscd-actions): New procedures. (nscd-shepherd-service): Add 'modules' and 'actions' fields. * gnu/tests/base.scm (run-basic-test)["nscd invalidate action"] ["nscd invalidate action, wrong table"]: New tests. * doc/guix.texi (Services): Mention 'herd doc nscd action'. (Base Services): Document the actions.
* services: mcron: Fix typo in comment.Ludovic Courtès2018-11-13
| | | | * gnu/services/mcron.scm (shepherd-schedule-action): Fix typo in comment.
* gnu: restic: Fix build phase.Oleg Pykhalov2018-11-13
| | | | | * gnu/packages/backup.scm (restic)[arguments]: Set "HOME" environment variable in build phase.
* gnu: c-toxcore: Fetch sources from git.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/messaging.scm (c-toxcore)[source]: Fetch from git.
* gnu: wine-staging: Update to 3.20.Rutger Helling2018-11-13
| | | | | * gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.20. * gnu/packages/wine.scm (wine-staging): Update to 3.20.
* gnu: php: Update to 7.2.12.Julien Lepiller2018-11-12
| | | | * gnu/packages/php.scm (php): Update to 7.2.12.
* gnu: youtube-dl: Update to 2018.11.07.Arun Isaac2018-11-12
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2018.11.07.
* gnu: vifm: Update to 0.10.Efraim Flashner2018-11-12
| | | | * gnu/packages/vim.scm (vifm): Update to 0.10.
* gnu: go-github-com-aarzilli-golua: Fix for go-1.11.Pierre Neidhardt2018-11-12
| | | | | | * gnu/packages/golang.scm (go-github-com-aarzilli-golua)[arguments]: Fix for go-1.11. [native-inputs]: Remove lua. [propagated-inputs]: Add lua.
* gnu: go-github-com-wtolson-go-taglib: Fix tests and build for go-1.11.Pierre Neidhardt2018-11-12
| | | | | | * gnu/packages/golang.scm (go-github-com-wtolson-go-taglib)[arguments]: Fix tests for go-1.11. [native-inputs]: Remove pkg-config and taglib. [propagated-inputs]: Add pkg-config and taglib.
* gnu: go-gopkg.in-asn1-ber.v1: Fix tests for go-1.11.Pierre Neidhardt2018-11-12
| | | | * gnu/packages/syncthing.scm (go-gopkg.in-asn1-ber.v1): Fix tests for go-1.11.
* gnu: go-github-com-audriusbutkevicius-cli: Fix tests for go-1.11.Pierre Neidhardt2018-11-12
| | | | * gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-cli): Fix tests for go-1.11.
* gnu: go-github-com-prometheus-common-expfmt: Fix tests for go-1.11.Pierre Neidhardt2018-11-12
| | | | * gnu/packages/syncthing.scm (go-github-com-prometheus-common-expfmt): Fix tests for go-1.11.
* gnu: go: Update default to 1.11.Pierre Neidhardt2018-11-12
| | | | * gnu/packages/golang.scm (go): Update default to 1.11.
* gnu: r-s4vectors: Update to 0.20.1.Ricardo Wurmus2018-11-11
| | | | * gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.20.1.
* gnu: r-rcmdcheck: Update to 1.3.2.Ricardo Wurmus2018-11-11
| | | | * gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.2.
* gnu: r-ggpubr: Update to 0.1.9.Ricardo Wurmus2018-11-11
| | | | * gnu/packages/cran.scm (r-ggpubr): Update to 0.1.9.
* gnu: r-dplyr: Update to 0.7.8.Ricardo Wurmus2018-11-11
| | | | * gnu/packages/statistics.scm (r-dplyr): Update to 0.7.8.
* gnu: r-rcpparmadillo: Update to 0.9.200.4.0.Ricardo Wurmus2018-11-11
| | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.4.0.
* gnu: r-rtsne: Update to 0.15.Ricardo Wurmus2018-11-11
| | | | * gnu/packages/statistics.scm (r-rtsne): Update to 0.15.
* gnu: r-lme4: Update to 1.1-19.Ricardo Wurmus2018-11-11
| | | | * gnu/packages/statistics.scm (r-lme4): Update to 1.1-19.
* gnu: webkitgtk@2.22: Adjust to documentation output.Marius Bakke2018-11-11
| | | | | | | This is a follow-up to commit 0ead0b4d2c025ad1b4a293fb6cbb8a578b7dd87d. * gnu/packages/webkit.scm (webkitgtk)[arguments]: Remove hard coded file list. (webkitgtk-2.22)[arguments]: Inherit phases using SUBSTITUTE-KEYWORD-ARGUMENTS.
* gnu: libtoxcore: Update to 0.0.0-2.bf69b54.Ricardo Wurmus2018-11-11
| | | | | * gnu/packages/messaging.scm (libtoxcore): Update to 0.0.0-2.bf69b54. [native-inputs]: Add check.
* gnu: mumi: Update to 0.0.0-2.bfd96ce7.Ricardo Wurmus2018-11-11
| | | | * gnu/packages/mail.scm (mumi): Update to 0.0.0-2.bfd96ce7.
* gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850].Leo Famulari2018-11-11
| | | | * gnu/packages/databases.scm (postgresql): Update to 10.6.
* gnu: webkitgtk: Include documentation.Pierre Neidhardt2018-11-11
| | | | * gnu/packages/webkit.scm (webkitgtk): Include documentation.
* gnu: gtk-doc: Use local docbook-xsl.Pierre Neidhardt2018-11-11
| | | | * gnu/packages/gtk.scm (gtk-doc): Use local docbook-xsl.
* gnu: faust-2: Update to 2.5.23.Ricardo Wurmus2018-11-11
| | | | | | | * gnu/packages/audio.scm (faust-2): Update to 2.5.23. [native-inputs]: Replace llvm-with-rtti with llvm-3.8-with-rtti. * gnu/packages/llvm.scm (llvm-with-rtti): Rename this variable... (llvm-3.8-with-rtti): ...to this variable; inherit from llvm-3.8.
* gnu: gajim: Move python-docutils from inputs to native-inputs.Clément Lassieur2018-11-11
| | | | | * gnu/packages/messaging.scm (gajim): Move python-docutils from inputs to native-inputs.
* gnu: gajim: Get the second 'wrap-program' phase to return #t.Clément Lassieur2018-11-11
| | | | | * gnu/packages/messaging.scm (gajim)[arguments]: Get the second 'wrap-program' phase to return #t.
* gnu: gajim: Update to 1.1.0.Clément Lassieur2018-11-11
| | | | | | | | * gnu/packages/messaging.scm (gajim): Update to 1.1.0. [arguments]: Set #:test-target to "test_nogui". Remove the 'remove-test-resolver' and 'start-xserver' phases. [inputs]: Remove python-pyasn1. Add python-cssutils, python-keyring and python-precis-i18n.
* gnu: python-nbxmpp: Update to 0.6.8.Clément Lassieur2018-11-11
| | | | * gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.8.
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