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* gnu: gap: Update to 4.10.1.Andreas Enge2019-06-17
| | | | | | | | * gnu/packages/algebra.scm (gap): Update to 4.10.1. Install headers and library files by hand, since the make targets have disappeared. Delete the special check phase, since the "make check" target has appeared. Remove a package that is no longer recommended, and enable two recommended packages with clarified licenses.
* gnu: cmst: Don't install files to usr.Efraim Flashner2019-06-17
| | | | | * gnu/packages/connman.scm (cmst)[arguments]: Move custom 'fix-Makefiles phase before 'build. Add more substitutions.
* gnu: cava: Don't install files to usr.Efraim Flashner2019-06-17
| | | | | * gnu/packages/audio.scm (cava)[arguments]: In configure-flags change FONT_DIR to not use 'usr'.
* gnu: toybox: Don't install files to usr.Efraim Flashner2019-06-17
| | | | | * gnu/packages/busybox.scm (toybox)[arguments]: Add custom phase to remove any files installed in $PREFIX/usr.
* gnu: xpra: Update to 2.5.2.Rutger Helling2019-06-17
| | | | * gnu/packages/xorg.scm (xpra): Update to 2.5.2.
* gnu: Add emacs-extend-smime.Chris Marusich2019-06-16
| | | | * gnu/packages/emacs-xyz.scm (emacs-extend-smime): New variable.
* gnu: Upgrade emacs-default-encrypt to 4.4.Chris Marusich2019-06-16
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-default-encrypt) <version>: Upgrade to 4.4. <sha256>: Update accordingly. <uri, home-page>: Honor changes to upstream's website.
* gnu: r-rhisat2: Update to 1.0.3.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.3.
* gnu: r-seurat: Update to 3.0.2.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.2.
* gnu: r-tximport: Update to 1.12.1.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.1.
* gnu: r-systempiper: Update to 1.18.1.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.1.
* gnu: r-r-utils: Update to 2.9.0.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/statistics.scm (r-r-utils): Update to 2.9.0.
* gnu: r-dt: Update to 0.7.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/statistics.scm (r-dt): Update to 0.7.
* gnu: r-rcpparmadillo: Update to 0.9.500.2.0.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.500.2.0.
* gnu: r-mime: Update to 0.7.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/statistics.scm (r-mime): Update to 0.7.
* gnu: r-formatr: Update to 1.7.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/statistics.scm (r-formatr): Update to 1.7.
* gnu: r-ggplot2: Update to 3.2.0.Ricardo Wurmus2019-06-17
| | | | | * gnu/packages/statistics.scm (r-ggplot2): Update to 3.2.0. [propagated-inputs]: Remove r-plyr.
* gnu: r-servr: Update to 0.14.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-servr): Update to 0.14.
* gnu: r-polspline: Update to 1.1.15.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-polspline): Update to 1.1.15.
* gnu: r-deldir: Update to 0.1-21.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-deldir): Update to 0.1-21.
* gnu: r-nor1mix: Update to 1.3-0.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-nor1mix): Update to 1.3-0.
* gnu: r-tractor-base: Update to 3.3.2.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-tractor-base): Update to 3.3.2.
* gnu: r-rspectra: Update to 0.15-0.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-rspectra): Update to 0.15-0.
* gnu: r-emmeans: Update to 1.3.5.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.
* gnu: r-abcrf: Update to 1.8.Ricardo Wurmus2019-06-17
| | | | | * gnu/packages/cran.scm (r-abcrf): Update to 1.8. [propagated-inputs]: Add r-doparallel and r-foreach.
* gnu: r-sjmisc: Update to 2.8.0.Ricardo Wurmus2019-06-17
| | | | | * gnu/packages/cran.scm (r-sjmisc): Update to 2.8.0. [propagated-inputs]: Remove r-haven; add r-insight.
* gnu: r-extradistr: Update to 1.8.11.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-extradistr): Update to 1.8.11.
* gnu: guile-gi: Update to 0.0.2.Ricardo Wurmus2019-06-17
| | | | | | | | * gnu/packages/guile-xyz.scm (guile-gi): Update to 0.0.2. [source]: Fetch using url-fetch. [arguments]: Add make flags to remove unexpectedly passing test from XFAIL_TESTS. [native-inputs]: Remove autoconf, automake, and texinfo.
* gnu: guile-picture-language: Update to 0.0.1-1-91d10c9.Ricardo Wurmus2019-06-17
| | | | | | | * gnu/packages/guile-xyz.scm (guile-picture-language): Update to 0.0.1-1-91d10c9. [build-system]: Use gnu-build-system. [native-inputs]: Add autoconf, automake, imagemagick, pkg-config, and texinfo.
* gnu: youtube-viewer: Refer to youtube-dl.Tobias Geerinckx-Rice2019-06-17
| | | | | * gnu/packages/video.scm (youtube-viewer)[inputs]: Add youtube-dl. [arguments]: Add ‘refer-to-inputs’ phase.
* gnu: radare2: Download over HTTPS.Tobias Geerinckx-Rice2019-06-17
| | | | * gnu/packages/engineering.scm (radare2)[source]: Use HTTPS.
* gnu: radare2: Don't use NAME in source URI.Tobias Geerinckx-Rice2019-06-17
| | | | * gnu/packages/engineering.scm (radare2)[source]: Hard-code NAME.
* gnu: nsd: Update to 4.2.0.Tobias Geerinckx-Rice2019-06-17
| | | | * gnu/packages/dns.scm (nsd): Update to 4.2.0.
* gnu: knot: Update to 2.8.2.Tobias Geerinckx-Rice2019-06-17
| | | | * gnu/packages/dns.scm (knot): Update to 2.8.2.
* gnu: suil: Update to 0.10.4.Tobias Geerinckx-Rice2019-06-17
| | | | * gnu/packages/audio.scm (suil): Update to 0.10.4.
* gnu: Add freeorionJesse Gibbons2019-06-16
| | | | * gnu/packages/games.scm (freeorion): New variable.
* gnu: docker-compose: Add required Python dependencies.Tobias Geerinckx-Rice2019-06-16
| | | | | | | * gnu/packages/python-xyz.scm (python-jsonschema-2.6): New old public variable. * gnu/packages/docker.scm (docker-compose)[inputs]: Add python-docker-pycreds and use python-jsonschema-2.6.
* gnu: dstat: Add two patches, fix two bugs.Tobias Geerinckx-Rice2019-06-16
| | | | | | | * gnu/packages/admin.scm (dstat)[source]: Add patches. * gnu/packages/patches/dstat-fix-crash-when-specifying-delay.patch, gnu/packages/patches/dstat-skip-devices-without-io.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
* gnu: dstat: Fix Python 3 deprecation warning.Tobias Geerinckx-Rice2019-06-16
| | | | | * gnu/packages/admin.scm (dstat)[arguments]: Add ‘fix-python3-DeprecationWarning’ phase.
* gnu: Add font-anonymous-pro-minus.Tobias Geerinckx-Rice2019-06-16
| | | | * gnu/packages/fonts.scm (font-anonymous-pro-minus): New public variable.
* gnu: keepassxc: Update to 2.4.3.Efraim Flashner2019-06-16
| | | | * gnu/packages/password-utils.scm (keepassxc): Update to 2.4.3.
* gnu: linux-libre: Update to 5.1.10.Mark H Weaver2019-06-16
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.10. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.51.Mark H Weaver2019-06-16
| | | | | * gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.51. (%linux-libre-4.19-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.126.Mark H Weaver2019-06-16
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.126. (%linux-libre-4.14-hash): Update hash.
* gnu: Add waybar.Gábor Boskovits2019-06-16
| | | | * gnu/packages/wm.scm(waybar): New variable.
* gnu: Add spdlog.Gábor Boskovits2019-06-15
| | | | * gnu/packages/logging.scm(spdlod): New variable.
* services: Include USB_ModeSwitch in %desktop-services.Florian Pelz2019-06-15
| | | | | | | | | Fixes <https://bugs.gnu.org/35640>. * gnu/services/desktop.scm (%desktop-services): Add usb-modeswitch-service-type. * doc/guix.texi (Networking Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* services: Add usb-modeswitch-service-type.Florian Pelz2019-06-15
| | | | | | | | | | * gnu/services/networking.scm (usb-modeswitch-service-type): New variable. (usb-modeswitch-configuration): New variable. (usb-modeswitch-sh): New procedure. (usb-modeswitch-configuration->udev-rules): New procedure. * doc/guix.texi (Networking Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: units: Update to 2.19.Ludovic Courtès2019-06-15
| | | | * gnu/packages/maths.scm (units): Update to 2.19.
* gnu: rush: Update to 1.9.Ludovic Courtès2019-06-15
| | | | * gnu/packages/rush.scm (rush): Update to 1.9.
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