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* gnu: python-llvmlite: Remove obsolete patch.Ricardo Wurmus2018-09-14
| | | | | * gnu/packages/llvm.scm (python-llvmlite)[inputs]: Remove patch that is obsolete since the upgrade to LLVM 6.0.1.
* gnu: Add openblas-ilp64.Eric Brown2018-09-14
| | | | | | * gnu/packages/maths.scm (openblas-ilp64): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* gnu: Add python-hic2cool.Ricardo Wurmus2018-09-14
| | | | * gnu/packages/bioinformatics.scm (python-hic2cool): New variable.
* gnu: Add r-abps.pimi2018-09-14
| | | | | | * gnu/packages/cran.scm (r-abps): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-abodoutlier.pimi2018-09-14
| | | | | | * gnu/packages/cran.scm (r-abodoutlier): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: rust: Update to 1.27.2.Danny Milosavljevic2018-09-13
| | | | * gnu/packages/rust.scm (rust): Update to 1.27.2.
* gnu: Add r-abnormality.pimi2018-09-13
| | | | | | * gnu/packages/cran.scm (r-abnormality): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-devel-checklib.Tobias Geerinckx-Rice2018-09-13
| | | | * gnu/packages/perl.scm (perl-devel-checklib): New public variable.
* gnu: sg3_utils: Mark up description.Tobias Geerinckx-Rice2018-09-13
| | | | | * gnu/packages/scsi.scm (sg3_utils)[description]: Use @dfn{}. Wrap commands in @command{} rather than @code{}, and @itemize them.
* gnu: sudo: Update to 1.8.25p1.Tobias Geerinckx-Rice2018-09-13
| | | | * gnu/packages/admin.scm (sudo): Update to 1.8.25p1.
* gnu: youtube-viewer: Update to 3.4.1.Tobias Geerinckx-Rice2018-09-13
| | | | * gnu/packages/video.scm (youtube-viewer): Update to 3.4.1.
* gnu: youtube-viewer: Don't use unstable tarball.Tobias Geerinckx-Rice2018-09-13
| | | | | * gnu/packages/video.scm (youtube-viewer)[source]: Use GIT-FETCH and GIT-FILE-NAME.
* Revert "gnu: libinput: Update to 1.12.0."Leo Famulari2018-09-13
| | | | | | | Libinput-minimal has a lot of dependent packages, and this isn't reported by `guix refresh --list-dependent`. We'll save this commit for another time. This reverts commit 38dc3d6f17bcf54ee3ff1614a392534d3a9e1ecc.
* gnu: Add r-abjutils.pimi2018-09-13
| | | | | | * gnu/packages/cran.scm (r-abjutils): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-abhgenotyper.pimi2018-09-13
| | | | | | * gnu/packages/cran.scm (r-abhgenotyper): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add ClusterShell.Manuel Graf2018-09-13
| | | | | | * gnu/packages/ssh.scm (clustershell): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* gnu: libinput: Update to 1.12.0.Leo Famulari2018-09-13
| | | | * gnu/packages/freedesktop.scm (libinput): Update to 1.12.0.
* gnu: Add r-abf2.pimi2018-09-13
| | | | | | gnu/packages/cran.scm (r-abf2): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: retroarch: Fix building on armhf-linux.Efraim Flashner2018-09-13
| | | | | * gnu/packages/emulators.scm (retroarch)[arguments]: Add custom flags when building for armhf-linux.
* gnu: retroarch: Use shared zlib.Efraim Flashner2018-09-13
| | | | | * gnu/packages/emulators.scm (retroarch)[arguments]: In custom 'configure phase, use our zlib instead of vendor's zlib.
* gnu: rust@1.23.0: Inherit outputs.Danny Milosavljevic2018-09-13
| | | | * gnu/packages/rust.scm (rust-1.23)[outputs]: Inherit.
* gnu: rust@1.25.0: Disable pedantic test.Danny Milosavljevic2018-09-13
| | | | | * gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases> [disable-nil-enum-test]: New phase.
* gnu: rust: Accept more detailed gdb responses.Danny Milosavljevic2018-09-13
| | | | | | | | | * gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/rust.scm (rust-1.25): Use it. (rust-1.26): Use it. (rust): Use it.
* gnu: Add r-abe.pimi2018-09-13
| | | | | | gnu/packages/cran.scm (r-abe): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-svdialogs.pimi2018-09-13
| | | | | | gnu/packages/cran.scm (r-svdialogs): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: racket: Fix incompatibility with libedit.宋文武2018-09-13
| | | | | | | | | The former patching made racket detecting libedit as the old 2.11 version, which leads to failure: <https://lists.gnu.org/archive/html/help-guix/2018-09/msg00027.html>. * gnu/packages/scheme.scm (racket)[arguments]: Patch the 'ffi-lib' call of libedit using 'PLT_READLINE_LIB'.
* gnu: rust@1.20.0: Replace "default-ar" by "ar".Danny Milosavljevic2018-09-13
| | | | | * gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Replace "default-ar" by "ar".
* gnu: Add rust@1.22.1.Danny Milosavljevic2018-09-13
| | | | * gnu/packages/rust.scm (rust-1.22): New variable.
* gnu: Add rust@1.21.0.Danny Milosavljevic2018-09-13
| | | | * gnu/packages/rust.scm (rust-1.21): New variable.
* gnu: rust-bootstrap: Clean up comments.Danny Milosavljevic2018-09-13
| | | | * gnu/packages/rust.scm (rust-bootstrap): Clean up comments.
* gnu: rust: Move "cc" from rust-bootstrap to rust proper.Danny Milosavljevic2018-09-13
| | | | | | * gnu/packages/rust.scm (rust-bootstrap)[arguments]<#:phases>[install]: Delete "cc". (rust-1.23)[arguments]<#:phases>: Delete "provide-cc" deletion.
* gnu: rust@1.23.0: Use rust@1.20.0 as template.Danny Milosavljevic2018-09-13
| | | | | | | | | | | | | * gnu/packages/rust.scm (rust-1.23)[inherit]: Use rust-1.20. [arguments]<#:phases>: Delete "patch-cargo-tomls" phase deletion. Add "provide-cc" phase deletion. Add "configure-archiver" phase deletion. [configure]: Inherit phase. [reset-timestamps-after-changes]: Inherit phase. [build]: Inherit phase. [check]: Inherit phase. [install]: Inherit phase. [wrap-rustc]: Inherit phase.
* gnu: Add emacs-org-reveal.Maxim Cournoyer2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-org-reveal): New variable.
* gnu: Add emacs-elpy.Maxim Cournoyer2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-elpy): New variable.
* gnu: Add emacs-highlight-indentation.Maxim Cournoyer2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-highlight-indentation): New variable.
* gnu: Add emacs-pyvenv.Maxim Cournoyer2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-pyvenv): New variable.
* gnu: Add emacs-find-file-in-project.Maxim Cournoyer2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-find-file-in-project): New variable.
* gnu: Add emacs-mocker.Maxim Cournoyer2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-mocker): New variable.
* gnu: Add emacs-el-x.Maxim Cournoyer2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-el-x): New variable.
* gnu: Add python-black.Maxim Cournoyer2018-09-12
| | | | * gnu/packages/python.scm (python-black): New variable.
* gnu: Add python-toml.Maxim Cournoyer2018-09-12
| | | | * gnu/packages/python.scm (python-toml): New variables.
* gnu: python-jedi: Update to 0.12.1.Maxim Cournoyer2018-09-12
| | | | | * gnu/packages/python.scm (python-jedi): Update to 0.12.1. [propagated-inputs]: Move python-parso here, as it is required at run time.
* gnu: Add rust@1.20.0.Danny Milosavljevic2018-09-13
| | | | * gnu/packages/rust.scm (rust-1.20): New variable.
* gnu: rust@1.19.0: Remove superfluous install-file call.Danny Milosavljevic2018-09-12
| | | | | * gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Remove superfluous install-file call.
* gnu: rust@1.19.0: Install rustdoc.Danny Milosavljevic2018-09-12
| | | | | * gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[install]: Install rustdoc.
* gnu: rust@1.19.0: Use match-lambda directly.Danny Milosavljevic2018-09-12
| | | | | | | Follow-up to 3159ef7c99c646b78b04cedb1bd3525c301ef978. * gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Use match-lambda directly.
* gnu: gnurl: Update to 7.61.1.Nils Gillmann2018-09-12
| | | | | | * gnu/packages/gnunet.scm (gnurl): Update to 7.61.1. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Zsh: Remove workaround required for Zsh 5.6.Leo Famulari2018-09-12
| | | | | | | This is a followup to commit 5a5d3e356311620df253d7c213c1bda79cd20128. * gnu/packages/shells.scm (zsh)[arguments]: Remove substitutions in 'patch-test' phase.
* gnu: emacs-hl-todo: Update to 1.9.0.Pierre Neidhardt2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.9.0.
* gnu: python-scikit-learn: Update to 0.19.2.Ricardo Wurmus2018-09-12
| | | | | | | | * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.19.2. [source]: Fetch from git. [arguments]: Run tests before installation; replace "check" phase, add "build-ext" phase; delete "reset-gzip-timestamps" phase. [native-inputs]: Add python-pytest and python-pandas; remove python-nose.
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