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* gnu: Git: Update to 2.26.1 [fixes CVE-2020-5260].Leo Famulari2020-04-15
| | | | | * gnu/packages/version-control.scm (git): Update to 2.26.1. [native-inputs]: Update git-manpages.
* gnu: emacs-helm-ag: Update to 0.59.base-for-series-3547Michael Rohleder2020-04-14
| | | | * gnu/packages/emacs-xyz.scm (emacs-helm-ag): Update to 0.59.
* gnu: cook: Fix test failure.Marius Bakke2020-04-14
| | | | * gnu/packages/cook.scm (cook)[arguments]: Override LC_ALL for one test.
* gnu: python-pyrsistent: Update to 0.16.0.Marius Bakke2020-04-14
| | | | * gnu/packages/python-xyz.scm (python-pyrsistent): Update to 0.16.0.
* gnu: python-gssapi: Update to 1.6.5.Marius Bakke2020-04-14
| | | | * gnu/packages/python-xyz.scm (python-gssapi): Update to 1.6.5.
* gnu: python-parso: Update to 0.7.0.Marius Bakke2020-04-14
| | | | * gnu/packages/python-xyz.scm (python-parso): Update to 0.7.0.
* gnu: mksh: Update to 58.Tobias Geerinckx-Rice2020-04-14
| | | | * gnu/packages/shells.scm (mksh): Update to 58.
* gnu: txr: Update to 235.Tobias Geerinckx-Rice2020-04-14
| | | | | * gnu/packages/lisp.scm (txr): Update to 235. [arguments]: Cosmetic shortening.
* gnu: txr: Call ./configure manually instead of patching.Tobias Geerinckx-Rice2020-04-14
| | | | | | | | * gnu/packages/lisp.scm (txr)[source]: Remove patch. [arguments]: Add ‘--prefix’ to #:configure-flags. Use a custom ‘configure’ phase. * gnu/packages/patches/txr-shell.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: txr: Declare test target.Tobias Geerinckx-Rice2020-04-14
| | | | | * gnu/packages/lisp.scm (txr)[arguments]: Use #:test-target instead of a trivial custom ‘check’ phase.
* gnu: i2pd: Update to 2.31.0.Tobias Geerinckx-Rice2020-04-14
| | | | * gnu/packages/i2p.scm (i2pd): Update to 2.31.0.
* gnu: strongswan: Update to 5.8.4.Tobias Geerinckx-Rice2020-04-14
| | | | * gnu/packages/networking.scm (strongswan): Update to 5.8.4.
* gnu: python-podcastparser: Update to 0.6.5.base-for-series-3541base-for-series-3535base-for-series-3531base-for-series-3530base-for-series-3527base-for-series-3526base-for-series-3523Tobias Geerinckx-Rice2020-04-14
| | | | * gnu/packages/gpodder.scm (python-podcastparser): Update to 0.6.5.
* gnu: man-pages: Update to 5.06.Tobias Geerinckx-Rice2020-04-14
| | | | * gnu/packages/man.scm (man-pages): Update to 5.06.
* gnu: x265: Update to 3.3.Tobias Geerinckx-Rice2020-04-14
| | | | * gnu/packages/video.scm (x265): Update to 3.3.
* gnu: r-glue: Update to 1.4.0.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/cran.scm (r-glue): Update to 1.4.0. [native-inputs]: Add commment explaining why r-knitr is not an input.
* gnu: r-rcpparmadillo: Update to 0.9.860.2.0.Ricardo Wurmus2020-04-14
| | | | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.860.2.0. [native-inputs]: Remove r-knitr, r-rmarkdown, ghc-pandoc, and ghc-pandoc-citeproc.
* gnu: r-atacseqqc: Update to 1.10.4.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.4.
* gnu: r-a4base: Update to 1.34.1.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.1.
* gnu: r-varianttools: Update to 1.28.1.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.1.
* gnu: r-genomicinteractions: Update to 1.20.3.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.3.
* gnu: r-delayedarray: Update to 0.12.3.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.3. [native-inputs]: Add r-knitr.
* gnu: r-s4vectors: Update to 0.24.4.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.4.
* gnu: r-httpcode: Update to 0.3.0.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-httpcode): Update to 0.3.0.
* gnu: r-isoband: Update to 0.2.1.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/cran.scm (r-isoband): Update to 0.2.1. [native-inputs]: Add r-knitr.
* gnu: r-anthropometry: Update to 1.14.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/cran.scm (r-anthropometry): Update to 1.14. [native-inputs]: Add r-knitr.
* gnu: r-lhs: Update to 1.0.2.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/cran.scm (r-lhs): Update to 1.0.2. [native-inputs]: Add r-knitr.
* gnu: r-txtplot: Update to 1.0-4.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-txtplot): Update to 1.0-4.
* gnu: r-parameters: Update to 0.6.1.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-parameters): Update to 0.6.1.
* gnu: r-sf: Update to 0.9-1.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-sf): Update to 0.9-1.
* gnu: r-spdata: Update to 0.3.5.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-spdata): Update to 0.3.5.
* gnu: r-classint: Update to 0.4-3.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/cran.scm (r-classint): Update to 0.4-3. [native-inputs]: Add r-knitr.
* gnu: r-lemon: Update to 0.4.4.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/cran.scm (r-lemon): Update to 0.4.4. [propagated-inputs]: Add r-rlang.
* gnu: r-compositions: Update to 1.40-5.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-compositions): Update to 1.40-5.
* gnu: r-lmertest: Update to 3.1-2.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-lmertest): Update to 3.1-2.
* gnu: r-usethis: Update to 1.6.0.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/cran.scm (r-usethis): Update to 1.6.0. [propagated-inputs]: Remove r-clisymbols; add r-cli and r-rematch2.
* gnu: r-fs: Update to 1.4.1.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-fs): Update to 1.4.1.
* gnu: r-effectsize: Update to 0.3.0.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/cran.scm (r-effectsize): Update to 0.3.0. [native-inputs]: Add r-knitr.
* gnu: r-multcomp: Update to 1.4-13.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-multcomp): Update to 1.4-13.
* gnu: r-survey: Update to 4.0.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-survey): Update to 4.0.
* gnu: r-sjmisc: Update to 2.8.4.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/cran.scm (r-sjmisc): Update to 2.8.4. [native-inputs]: Add r-knitr.
* gnu: r-arules: Update to 1.6-5.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-arules): Update to 1.6-5.
* gnu: r-xfun: Update to 0.13.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/cran.scm (r-xfun): Update to 0.13. [native-inputs]: Add comment about not adding r-knitr.
* gnu: r-rcpp: Update to 1.0.4.6.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/cran.scm (r-rcpp): Update to 1.0.4.6.
* gnu: r-lubridate: Update to 1.7.8.Ricardo Wurmus2020-04-14
| | | | | | * gnu/packages/statistics.scm (r-lubridate): Update to 1.7.8. [propagated-inputs]: Remove r-stringr; add r-generics. [native-inputs]: Add r-knitr.
* gnu: r-cairo: Update to 1.5-12.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.
* gnu: r-lme4: Update to 1.1-23.Ricardo Wurmus2020-04-14
| | | | | | * gnu/packages/statistics.scm (r-lme4): Update to 1.1-23. [native-inputs]: Add r-knitr. [propagated-inputs]: Add r-statmod.
* gnu: r-mclust: Update to 5.4.6.Ricardo Wurmus2020-04-14
| | | | | * gnu/packages/statistics.scm (r-mclust): Update to 5.4.6. [native-inputs]: Add r-knitr.
* gnu: r-sfsmisc: Update to 1.1-6.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-6.
* gnu: r-plotly: Update to 4.9.2.1.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/statistics.scm (r-plotly): Update to 4.9.2.1.
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