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* gnu: pigx-chipseq: Use pandoc-1.Ricardo Wurmus2018-03-19
| | | | | | * gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
* gnu: pigx-rnaseq: Use pandoc-1.Ricardo Wurmus2018-03-19
| | | | | | * gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
* gnu: Add ghc-pandoc-citeproc-with-pandoc-1.Ricardo Wurmus2018-03-19
| | | | * gnu/packages/haskell.scm (ghc-pandoc-citeproc-with-pandoc-1): New variable.
* gnu: Add r-abbyyr.Vijayalakshmi Vedantham2018-03-19
| | | | | | * gnu/packages/cran.scm (r-abbyyr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* glob: Add an extra glob pattern compilation stage.Ludovic Courtès2018-03-18
| | | | | | | | | | | | | * guix/glob.scm (compile-glob-pattern): Rename to... (string->sglob): ... this. (compile-sglob, string->compiled-sglob): New procedures. (glob-match?): Replace '?, 'range, and 'set with a single clause. * tests/glob.scm (test-compile-glob-pattern): Rename to... (test-string->sglob): ... this. Adjust accordingly. (test-glob-match): Use 'string->compiled-sglob' instead of 'compile-glob-pattern'. * gnu/build/linux-modules.scm (read-module-aliases): Use 'string->compiled-sglob' instead of 'compile-glob-pattern'.
* linux-modules: 'load-linux-module*' honors BLACK-LIST in recursive calls.Ludovic Courtès2018-03-18
| | | | | * gnu/build/linux-modules.scm (load-linux-module*): Pass BLACK-LIST in recursive call.
* linux-modules: Add 'current-kernel-directory'.Ludovic Courtès2018-03-18
| | | | | * gnu/build/linux-modules.scm (current-kernel-directory): New procedure. (current-alias-file): Use it.
* vm: Display a backtrace upon error by default.Ludovic Courtès2018-03-18
| | | | | * gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass #:on-error to 'base-initrd'.
* gnu: youtube-dl: Update to 2018.03.14.Sohom Bhattacharjee2018-03-18
| | | | | | * gnu/packages/video.scm (youtube-dl): Update to 2018.03.14. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: shotwell: Update to 0.28.0.Christopher Baines2018-03-18
| | | | * gnu/packages/gnome.scm (shotwell): Update to 0.28.0.
* gnu: Add ruby-ruby-engine.Ben Woodcroft2018-03-18
| | | | * gnu/packages/ruby.scm (ruby-ruby-engine): New variable.
* gnu: Add ruby-rake.Ben Woodcroft2018-03-18
| | | | * gnu/packages/ruby.scm (ruby-rake): New variable.
* gnu: Add ruby-erubis.Ben Woodcroft2018-03-18
| | | | * gnu/packages/ruby.scm (ruby-erubis): New variable.
* gnu: Add ruby-sporkmonger-rack-mount.Ben Woodcroft2018-03-18
| | | | * gnu/packages/ruby.scm (ruby-sporkmonger-rack-mount): New variable.
* gnu: Add ruby-creole.Ben Woodcroft2018-03-18
| | | | * gnu/packages/ruby.scm (ruby-creole): New variable.
* gnu: Add ruby-contest.Ben Woodcroft2018-03-18
| | | | * gnu/packages/ruby.scm (ruby-contest): New variable.
* gnu: Add ruby-rack-protection.Ben Woodcroft2018-03-18
| | | | * gnu/packages/ruby.scm (ruby-rack-protection): New variable.
* gnu: Add ruby-rack-test.Ben Woodcroft2018-03-18
| | | | * gnu/packages/ruby.scm (ruby-rack-test): New variable.
* gnu: Add ruby-asciidoctor.Ben Woodcroft2018-03-18
| | | | * gnu/packages/ruby.scm (ruby-asciidoctor): New variable.
* gnu: Add ruby-asciimath.Ben Woodcroft2018-03-18
| | | | * gnu/packages/maths.scm (ruby-asciimath): New variable.
* gnu: icecat: Fix CVE-2018-{5146,5147}, etc.Mark H Weaver2018-03-17
| | | | | | | Includes fixes for CVE-2018-5146 and CVE-2018-5147. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr52 repository.
* gnu: Add terraform-docs.Christopher Baines2018-03-17
| | | | | * gnu/packages/terraform.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu: Add go-github-com-hashicorp-hcl.Christopher Baines2018-03-17
| | | | * gnu/packages/golang.scm (go-github-com-hashicorp-hcl): New variable.
* gnu: Add go-github-com-tj-docopt.Christopher Baines2018-03-17
| | | | * gnu/packages/golang.scm (go-github-com-tj-docopt): New variable.
* gnu: guile-git: Update to 2bb9fbb.Ludovic Courtès2018-03-18
| | | | * gnu/packages/guile.scm (guile-git): Update to 2bb9fbb.
* gnu: nss-mdns: Adjust Avahi socket file name.Ludovic Courtès2018-03-18
| | | | | | | | | Fixes <https://bugs.gnu.org/30613>. Regression introduced in 550f4509acf2c0f67882260414b0bb2843e07465. Reported by George myglc2 Clemmer <myglc2@gmail.com>. * gnu/packages/avahi.scm (nss-mdns)[arguments]: Remove #:configure-flags. Add #:phases.
* gnu: datamash: Update to 1.3.Ludovic Courtès2018-03-18
| | | | * gnu/packages/datamash.scm (datamash): Update to 1.3.
* gnu: fvwm: Add '.desktop' file.ng02018-03-18
| | | | | | * gnu/packages/fvwm.scm (fvwm)[arguments]: Add new phase to create '.desktop' file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* services: openssh: Add 'accepted-environment' field.Martin Castillo2018-03-18
| | | | | | | | * gnu/services/ssh.scm (<openssh-configuration>)[accepted-environment]: New field. (openssh-config-file): Honor 'acccepted-environment'. * doc/guix.texi (Networking Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: java-simple-xml: Fix java8 test failures.Gábor Boskovits2018-03-18
| | | | | | | | * gnu/packages/patches/javas-simple-xml-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/java.scm (java-simple-xml)[source](patches): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: shaderc: Clean up package arguments.Efraim Flashner2018-03-17
| | | | | * gnu/packages/vulkan.scm (shaderc)[version]: Remove extra '-'. [arguments]: Remove extra 'mkdir-p' calls and refer to inputs directly.
* Revert "gnu: shaderc: Use more standard keys."Rutger Helling2018-03-17
| | | | | This reverts commit 9bc0591bc11190ac49c8ea3cf44c4903c924f6c7. This commit broke 'shaderc'.
* gnu: Add python-prometheus-client.Christopher Baines2018-03-17
| | | | | * gnu/packages/monitoring.scm (python-prometheus-client, python2-prometheus-client): New variables.
* services: databases: Change quote' to single-quote.Christopher Baines2018-03-17
| | | | | | | In the postgresql-config-file gexp compiler. * gnu/services/databases.scm (postgresql-config-file-compiler): Change quote' to single-quote.
* gnu: Use the CMake build system's #:build-type key.Tobias Geerinckx-Rice2018-03-17
| | | | | | | | | | | | | | | * gnu/packages/code.scm (rtags)[arguments]: Move the CMAKE_BUILD_TYPE from #:configure-flags to #:build-type. * gnu/packages/databases.scm (apache-arrow)[arguments]: Likewise * gnu/packages/engineering.scm (kicad)[arguments]: Likewise * gnu/packages/flashing-tools.scm (heimdall)[arguments]: Likewise * gnu/packages/graphics.scm (openscenegraph)[arguments]: Likewise * gnu/packages/linux.scm (rdma-core)[arguments]: Likewise * gnu/packages/music.scm (portmidi)[arguments]: Likewise * gnu/packages/photo.scm (rawtherapee)[arguments]: Likewise * gnu/packages/rdesktop.scm (freerdp)[arguments]: Likewise * gnu/packages/serialization.scm (flatbuffers)[arguments]: Likewise * gnu/packages/web.scm (tidy-html)[arguments]: Likewise
* gnu: Fix common unquote typos.Tobias Geerinckx-Rice2018-03-17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | It's easy to mistype ‘("foo" foo)’ as ‘("foo", foo)’ (which also works). Fix such typos for the proper edification of our young. * gnu/packages/android.scm: Move unquotes to their operands. * gnu/packages/bootloaders.scm: Likewise. * gnu/packages/build-tools.scm: Likewise. * gnu/packages/chemistry.scm: Likewise. * gnu/packages/compression.scm: Likewise. * gnu/packages/connman.scm: Likewise. * gnu/packages/django.scm: Likewise. * gnu/packages/emulators.scm: Likewise. * gnu/packages/engineering.scm: Likewise. * gnu/packages/file-systems.scm: Likewise. * gnu/packages/freedesktop.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gimp.scm: Likewise. * gnu/packages/gl.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/graphics.scm: Likewise. * gnu/packages/haskell.scm: Likewise. * gnu/packages/irc.scm: Likewise. * gnu/packages/julia.scm: Likewise. * gnu/packages/kde-frameworks.scm: Likewise. * gnu/packages/linux.scm: Likewise. * gnu/packages/lua.scm: Likewise. * gnu/packages/mail.scm: Likewise. * gnu/packages/make-bootstrap.scm: Likewise. * gnu/packages/messaging.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/networking.scm: Likewise. * gnu/packages/ocaml.scm: Likewise. * gnu/packages/perl.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/python-web.scm: Likewise. * gnu/packages/qt.scm: Likewise. * gnu/packages/ratpoison.scm: Likewise. * gnu/packages/sdl.scm: Likewise. * gnu/packages/sml.scm: Likewise. * gnu/packages/terminals.scm: Likewise. * gnu/packages/text-editors.scm: Likewise. * gnu/packages/video.scm: Likewise. * gnu/packages/virtualization.scm: Likewise. * gnu/packages/vulkan.scm: Likewise. * gnu/packages/wget.scm: Likewise. * gnu/packages/wine.scm: Likewise. * gnu/packages/wm.scm: Likewise. * gnu/packages/xdisorg.scm: Likewise. * gnu/packages/xml.scm: Likewise. * gnu/packages/xorg.scm: Likewise.
* gnu: shaderc: Use more standard keys.Tobias Geerinckx-Rice2018-03-17
| | | | | | * gnu/packages/vulkan.scm (shaderc)[arguments]: Move cmake options from the raw INVOKE call to #:build-type and #:configure-flags. Adjust the ‘configure’ phase accordingly.
* gnu: shaderc: Use standard versioning scheme.Tobias Geerinckx-Rice2018-03-17
| | | | | * gnu/packages/vulkan.scm (shaderc)[version]: Use GIT-VERSION with a ‘0.0.0’ prefix.
* gnu: shaderc: Fix formatting.Tobias Geerinckx-Rice2018-03-17
| | | | | * gnu/packages/vulkan.scm (shaderc): Use conventional indentation. [native-inputs]: Move unquotes to their operands.
* gnu: texlive-latex-type1cm: Fix description typo.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/tex.scm (texlive-latex-type1cm)[description]: Fix typo.
* gnu: python-pkginfo: Update to 1.4.2.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-pkginfo): Update to 1.4.2.
* gnu: python-nbformat: Update to 4.4.0.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-nbformat): Update to 4.4.0.
* gnu: python-simplejson: Update to 3.13.2.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-simplejson): Update to 3.13.2.
* gnu: python-ptyprocess: Update to 0.5.2.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-ptyprocess): Update to 0.5.2.
* gnu: python-chai: Update to 1.1.2.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-chai): Update to 1.1.2.
* gnu: python-jupyter-console: Update to 5.2.0.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-jupyter-console): Update to 5.2.0.
* gnu: python-kazoo: Update to 2.4.0.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-kazoo): Update to 2.4.0.
* gnu: python-jupyter-core: Update to 4.4.0.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-jupyter-core): Update to 4.4.0.
* gnu: python-phonenumbers: Update to 8.9.1.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-phonenumbers): Update to 8.9.1.
* gnu: python-decorator: Update to 4.2.1.Tobias Geerinckx-Rice2018-03-17
| | | | * gnu/packages/python.scm (python-decorator): Update to 4.2.1.
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