| Commit message (Collapse) | Author | Age |
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* gnu/packages/guile.scm (guile2.0-git): New variable.
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* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-bytestructures)[source]: Use it.
[arguments]: Unpack the source.
[native-inputs]: New field.
(guile2.0-bytestructures): New variable.
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* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
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This reverts commit f2fa86cc82b5941bde63b666337eea59aa609e55.
Commit 5ea8dbf0c906d51779ba0cf775ec9967f5f42382 fixes the underlying
issue in GNU Common Lisp.
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* gnu/packages/lisp.scm (gcl)[arguments]: Add -fgnu89-inline to CFLAGS.
Add GCC path to make-flags. Modify 'pre-conf' phase. Add 'wrap' phase.
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Includes fixes for CVE-2017-7039, CVE-2017-7018, CVE-2017-7030, CVE-2017-7037,
CVE-2017-7034, CVE-2017-7055, CVE-2017-7056, CVE-2017-7064, CVE-2017-7061,
CVE-2017-7048, and CVE-2017-7046.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.6.
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* gnu/system/shadow.scm (default-skeletons): Add ".guile".
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* gnu/packages/xorg.scm (xterm): Update to 330.
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* gnu/packages/ncurses.scm (dialog): Update to 1.3-20170509.
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* gnu/packages/xiph.scm (opus): Update to 1.2.1.
[source]: Use new source URL.
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* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
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* gnu/packages/package-management.scm (guix): Update to f1ddfe4.
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* gnu/packages/python.scm (python-flaky)[description]: Escape "@".
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This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.9.10-P2, commit ecb232bdfcb2718de5944bcf4d9c4e288ec41519.
See 'CHANGELOG' in the source distribution for more information.
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P3.
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This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.11.1-P2, commit faa1369e3cb72bda4ba8b63029d0ad780df9cf78.
See 'CHANGELOG' in the source distribution for more information.
* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P3.
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This is needed to avoid compilation problems caused by the cyclic dependency
between (gnu packages ncurses) and (gnu packages linux).
* gnu/packages/linux.scm (ncurses/gpm): Move to ...
* gnu/packages/ncurses.scm (ncurses/gpm): ... here. Fix misleading
indentation. Add (gnu packages linux) to the module imports.
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* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to
find and install the aarch64-linux kernel.
* gnu/system.scm (system-linux-image-file-name): Add entry for aarch64.
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* gnu/packages/xorg.scm (xf86-video-freedreno): New variable.
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* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable.
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* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07.
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* gnu/packages/samba.scm (tevent): Update to 0.9.33.
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* gnu/packages/samba.scm (talloc): Update to 2.1.10.
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* gnu/packages/samba.scm (ldb): Update to 1.1.31.
[native-inputs]: Add CMOCKA.
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* gnu/packages/check.scm (cmocka): Update to 1.1.1.
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* gnu/packages/databases.scm (tdb): Update to 1.3.14.
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* gnu/packages/python.scm (python-scipy): Update to 0.19.1.
[source]: Use 'pypi-uri'.
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* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2.
[source]: Use 'pypi-uri'.
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* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to
2.2.0.
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* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use
'modify-phases'.
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gnu/packages/wm.scm (xmobar): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/bash.scm (bash-completion): Update to 2.7.
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* gnu/packages/mail.scm (getmail): Update to 5.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag. Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
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* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
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* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch. Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
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* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.
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* gnu/packages/wm.scm (bspwm): Update to 0.9.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/shells.scm (oksh): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23.
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* gnu/packages/ssh.scm (mosh): Update to 1.3.2.
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* gnu/packages/medical.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Co-authored-by: Quiliro <quiliro@fsfla.org>
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* gnu/packages/qt.scm (python-pyqt+qscintilla): New variable.
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