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* gnu: Add cran module.Ricardo Wurmus2017-07-22
| | | | | | * gnu/packages/cran.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
* gnu: linux-libre: Update to 4.12.3.Mark H Weaver2017-07-22
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.3. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.39.Mark H Weaver2017-07-22
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.39.
* gnu: linux-libre@4.4: Update to 4.4.78.Mark H Weaver2017-07-22
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.78.
* gnu: r-s4vectors: Update to 0.14.3.Ricardo Wurmus2017-07-22
| | | | * gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.3.
* gnu: r-genomicranges: Update to 1.28.4.Ricardo Wurmus2017-07-22
| | | | * gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.4.
* gnu: Remove python-fake-factory leftovers.Marius Bakke2017-07-22
| | | | | | | This is a followup to c799eb2eb8b1a820147af96988eddaa9f752994b. * gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Remove python-fake-factory.Marius Bakke2017-07-22
| | | | | | | Superseded by python-faker since ce7911ddae5d30ba73c8c9552b7d4e71268e5db3. * gnu/packages/python.scm (python-fake-factory, python2-fake-factory): Remove variables.
* gnu: python-pyopenssl: Update to 17.2.0.Marius Bakke2017-07-22
| | | | | | | | * gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0. [native-inputs]: Add PYTHON-FLAKY. [source](patches): Remove.
* gnu: Add python-flaky.Marius Bakke2017-07-22
| | | | * gnu/packages/python.scm (python-flaky, python2-flaky): New variables.
* gnu: maim: Update to 5.4.64.Marius Bakke2017-07-22
| | | | * gnu/packages/xdisorg.scm (maim): Update to 5.4.64.
* gnu: slop: Update to 6.3.47.Marius Bakke2017-07-22
| | | | | * gnu/packages/xdisorg.scm (slop): Update to 6.3.47. [inputs]: Add GLEW.
* gnu: parallel: Update to 20170722.Tobias Geerinckx-Rice2017-07-22
| | | | * gnu/packages/parallel.scm (parallel): Update to 20170722.
* gnu: font-gnu-unifont: Update to 10.0.05.Tobias Geerinckx-Rice2017-07-22
| | | | * gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.05.
* gnu: nano: Update to 2.8.6.Tobias Geerinckx-Rice2017-07-22
| | | | * gnu/packages/nano.scm (nano): Update to 2.8.6.
* gnu: acct: Update to 6.6.4.Tobias Geerinckx-Rice2017-07-22
| | | | * gnu/packages/acct.scm (acct): Update to 6.6.4.
* gnu: Add conda.Muriithi Frederick Muriuki2017-07-22
| | | | | | * gnu/packages/package-management.scm (conda): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-conda.Muriithi Frederick Muriuki2017-07-22
| | | | | | | * gnu/packages/package-management.scm (python-conda, python2-conda): New variables. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-anaconda-client.Muriithi Frederick Muriuki2017-07-22
| | | | | | | * gnu/packages/package-management.scm (python-anaconda-client, python2-anaconda-client): New variables. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-clyent.Muriithi Frederick Muriuki2017-07-22
| | | | * gnu/packages/python.scm (python-clyent, python2-clyent): New variables.
* gnu: Update python-pytz to 2017.2.Muriithi Frederick Muriuki2017-07-22
| | | | | | * gnu/packages/python.scm (python-pytz, python2-pytz): Update to 2017.2. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: man-pages: Update to 4.12.Tobias Geerinckx-Rice2017-07-22
| | | | * gnu/packages/man.scm (man-pages): Update to 4.12.
* gnu: tint2: Update to 0.14.6.Eric Bavier2017-07-21
| | | | * gnu/packages/xdisorg.scm (tint2): Update to 0.14.6.
* gnu: icedtea@3: Update to 3.5.0 [security fixes].Leo Famulari2017-07-21
| | | | | | | | Fixes CVE-2017-{10053,10067,10074,10074,10078,10081,10087,10089,10090,10096, 10101,10102,10107,10108,10109,10110,10111,10115,10116,10118,10135,10176,10193, 10198}. * gnu/packages/java.scm (icedtea-8): Update to 3.5.0.
* services: cuirass: Add fallback parameter.Mathieu Othacehe2017-07-21
| | | | | | * gnu/services/cuirass.scm (<cuirass-configuration>)[fallback?]: New field. (cuirass-shepherd-service): Take it into account. * doc/guix.texi (Continuous Integration): Document it.
* gnu: vim: Update to 8.0.0727 [fixes CVE-2017-11109].Leo Famulari2017-07-21
| | | | | * gnu/packages/vim.scm (vim): Update to 8.0.0727. (vim-full)[source]: Add field and hold back at version 8.0.0600.
* gnu: mysql: Update to 5.7.19.Leo Famulari2017-07-21
| | | | * gnu/packages/databases.scm (mysql): Update to 5.7.19.
* gnu: libpsl: Update to 0.18.0.Tobias Geerinckx-Rice2017-07-21
| | | | | | * gnu/packages/web.scm (libpsl): Update to 0.18.0. [native-inputs]: Add pkg-config. [inputs]: Replace icu4c with libidn2; add libunistring.
* gnu: borg: Update to 1.0.11.Leo Famulari2017-07-21
| | | | * gnu/packages/backup.scm (borg): Update to 1.0.11.
* gnu: bitcoin-core: Actually build the graphical client.Leo Famulari2017-07-20
| | | | * gnu/packages/finance.scm (bitcoin-core)[inputs]: Replace qtbase with qt.
* gnu: heimdal: Fix CVE-2017-{6594,11103}.Alex Vong2017-07-20
| | | | | | | * gnu/packages/patches/heimdal-CVE-2017-6594.patch, gnu/packages/patches/heimdal-CVE-2017-11103.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/kerberos.scm (heimdal)[source]: Use them.
* gnu: Add bmon.Arun Isaac2017-07-20
| | | | * gnu/packages/networking.scm (bmon): New variable.
* gnu: texlive-latex-mdwtools: Fix syntax error in description.Ricardo Wurmus2017-07-20
| | | | | * gnu/packages/tex.scm (texlive-latex-mdwtools)[description]: Fix texinfo syntax error.
* gnu: texlive-latex-environ: Fix invalid texinfo markup.Ricardo Wurmus2017-07-20
| | | | | * gnu/packages/tex.scm (texlive-latex-environ)[description]: Fix texinfo syntax errors.
* gnu: Add mksh.Arun Isaac2017-07-20
| | | | * gnu/packages/shells.scm (mksh): New variable.
* gnu: Remove a left-over patch.Leo Famulari2017-07-20
| | | | | | | This is a followup to commit 426b0b898f70a58133d80779980f163a5761686e. * gnu/packages/patches/pcre-CVE-2017-7186.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: pcre: Update replacement to 8.41 [fixes CVE-2017-{7244,7245,7246}].Leo Famulari2017-07-20
| | | | | | * gnu/packages/pcre.scm (pcre)[replacement]: Update to pcre-8.41. (pcre/fixed): Replace with ... (pcre-8.41): ... new variable.
* tests: Use 'virtual-machine' records instead of monadic procedures.Ludovic Courtès2017-07-20
| | | | | | | | | | | | | | | * gnu/tests/base.scm (%test-basic-os): Use 'let*' instead of 'mlet*' and 'virtual-machine' instead of 'system-qemu-image/shared-store-script'. (run-mcron-test): Likewise. (run-nss-mdns-test): Likewise. * gnu/tests/dict.scm (run-dicod-test): Likewise. * gnu/tests/mail.scm (run-opensmtpd-test): Likewise. (run-exim-test): Likewise. * gnu/tests/messaging.scm (run-xmpp-test): Likewise. * gnu/tests/networking.scm (run-inetd-test): Likewise. * gnu/tests/nfs.scm (run-nfs-test): Likewise. * gnu/tests/ssh.scm (run-ssh-test): Likewise. * gnu/tests/web.scm (run-nginx-test): Likewise.
* vm: Add a <virtual-machine> type and associated gexp compiler.Ludovic Courtès2017-07-20
| | | | | | | | | * gnu/system/vm.scm (system-qemu-image/shared-store-script): Add #:options parameter and honor it. (<virtual-machine>): New record type. (virtual-machine): New macro. (port-forwardings->qemu-options, virtual-machine-compiler): New procedures.
* gnu: Add premake4.Oleg Pykhalov2017-07-20
| | | | | | * gnu/packages/build-tools.scm (premake4): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add java-commons-cli@1.2.Gábor Boskovits2017-07-20
| | | | | | * gnu/packages/java.scm(java-commons-cli-1.2): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Update g-wrap to use guile-2.2.Theodoros Foradis2017-07-20
| | | | | | | * gnu/packages/guile.scm (g-wrap): [propagated-inputs]: Use guile-2.2. [arguments]: Add "--disable-Werror" to configure-flags. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add eolie.Ricardo Wurmus2017-07-20
| | | | * gnu/packages/gnome.scm (eolie): New variable.
* gnu: perl-html-template: Update to 2.97.Tobias Geerinckx-Rice2017-07-20
| | | | * gnu/packages/web.scm (perl-html-template): Update to 2.97.
* gnu: openh264: Update to 1.7.0.Tobias Geerinckx-Rice2017-07-20
| | | | * gnu/packages/video.scm (openh264): Update to 1.7.0.
* gnu: gnome-mpv: Update to 0.12.Tobias Geerinckx-Rice2017-07-20
| | | | * gnu/packages/video.scm (gnome-mpv): Update to 0.12.
* gnu: Add 0xffff.Jonathan Brielmaier2017-07-20
| | | | | | * gnu/packages/flashing-tools.scm (0xffff): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add libusb@0.1.Jonathan Brielmaier2017-07-20
| | | | | | | | * gnu/packages/libusb.scm (libusb-0.1): New variable. * gnu/packages/patches/libusb-0.1-disable-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: lapack: Fix hash of release 3.7.1Maxim Cournoyer2017-07-20
| | | | | | | | | Apparently the release was modified (cleaned-up) in-place. An issue was opened at https://github.com/Reference-LAPACK/lapack-release/issues/4. * gnu/packages/maths.scm (lapack): Fix sha256 hash. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add patches missing from dist_patch_DATA.Ben Woodcroft2017-07-20
| | | | | | | | | | Reported by Eric Bavier. * gnu/local.mk (dist_patch_DATA): Add gnu/packages/patches/hmmer-remove-cpu-specificity.patch, gnu/packages/patches/jacal-fix-texinfo.patch, gnu/packages/patches/python-pbr-fix-man-page-support.patch and gnu/packages/patches/vsearch-unbundle-cityhash.patch.
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