| Commit message (Collapse) | Author | Age |
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* gnu/packages/guile.scm (guile-newt): Update revision to 2.
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* gnu/packages/algebra.scm (cmh): New variable.
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* gnu/packages/algebra.scm (gp2c): Update to 0.0.11pl1.
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This fixes https://bugs.gnu.org/33196, a build problem caused by a defective
Elisp snippet in a check in configure.ac.
* gnu/packages/patches/emacs-realgud-fix-configure-ac.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/emacs.scm (emacs-realgud)[source]: Use it.
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* gnu/packages/bioinformatics.scm (nanopolish): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/bioinformatics.scm (sambamba): Update to 0.6.8.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.2.
(%linux-libre-hash): Update hash.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.81.
(%linux-libre-4.14-hash): Update hash.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.137.
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* gnu/packages/simulation.scm (fenics): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (fenics-dolfin): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (python-fenics-ffc): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (python-fenics-fiat): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (python-fenics-ufl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (python-fenics-dijitso): New varaible.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (python-slepc4py): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (python-petsc4py): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/mpi.scm (python-mpi4py): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Fixes <https://bugs.gnu.org/33368>.
Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>.
* gnu/packages/package-management.scm (guix-daemon)[arguments]: In
'install' phase, build "install-nodist_libexecSCRIPTS" target to install
'guix-authenticate'.
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* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.12.0.
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* gnu/packages/mtools.scm (mtools): Update to 4.0.20.
[source](uri): Change to 'bz2' compressed tarball.
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* gnu/packages/nano.scm (nano): Update to 3.2.
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* gnu/packages/admin.scm (sudo): Update to 1.8.26.
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* gnu/packages/image-viewers.scm (feh): Update to 3.0.
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* gnu/packages/bioinformatics.scm (jamm): New variable.
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* gnu/packages/cran.scm (r-ouch): New variable.
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* gnu/packages/cran.scm (r-activity): New variable.
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* gnu/packages/cran.scm (r-circular): New variable.
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* gnu/packages/cran.scm (r-overlap): New variable.
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* gnu/packages/cran.scm (r-acdm): New variable.
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* gnu/packages/cran.scm (r-acd): New variable.
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* gnu/packages/cran.scm (r-abn): New variable.
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* gnu/packages/cran.scm (r-rjags): New variable.
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* gnu/packages/statistics.scm (jags): New variable.
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* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.4.
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* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.2.0.
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Fixes <https://bugs.gnu.org/33346>.
* gnu/packages/spice.scm (spice-vdagent)[arguments]: Fix typo in
'patch-spice-vdagent.desktop' phase.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-14.
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* gnu/packages/ssh.scm (libssh)[source]: Use HTTPS URL.
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* gnu/packages/shellutils.scm (direnv)[native-inputs]: Remove go.
[inputs]: Add go-1.9.
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* gnu/packages/patches/poppler-CVE-2018-19149.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
(poppler-qt4, poppler-qt5): Use package/inherit.
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* gnu/packages/tls.scm (certbot, python-acme): Update to 0.28.0.
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* gnu/packages/package-management.scm (guix): Update to f5a2724.
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* gnu/services/base.scm (nscd-action-procedure, nscd-actions): New
procedures.
(nscd-shepherd-service): Add 'modules' and 'actions' fields.
* gnu/tests/base.scm (run-basic-test)["nscd invalidate action"]
["nscd invalidate action, wrong table"]: New tests.
* doc/guix.texi (Services): Mention 'herd doc nscd action'.
(Base Services): Document the actions.
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