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* gnu: Remove python-mock@1.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python-mock): Update to 2.0.0. [native-inputs]: Add PYTHON-UNITTEST2. [propagated-inputs]: Add PYTHON-PBR and PYTHON-SIX. [arguments]: Override 'check' phase. [properties]: Declare python2 variant. (python2-mock)[propagated-inputs]: Add PYTHON2-FUNCTOOLS32 and PYTHON2-FUNCSIGS. (python-mock-2): Remove variable. * gnu/packages/python.scm (python-flake8)[native-inputs]: Adjust accordingly. * gnu/packages/tls.scm (python-acme, certbot)[native-inputs]: Likewise.
* gnu: Add python2-funcsigs.Marius Bakke2017-10-19
| | | | * gnu/packages/python.scm (python2-funcsigs): New variable.
* gnu: python-flake8: Update to 3.4.1.Marius Bakke2017-10-19
| | | | | | | | | | | | | * gnu/packages/python.scm (python-flake8): Update to 3.4.1. [source]: Remove obsolete snippet. [arguments]: Override 'check' phase. [propagated-inputs]: Remove PYTHON-PEP8. Add PYTHON-PYCODESTYLE and PYTHON-SETUPTOOLS. [native-inputs]: Change PYTHON-MOCK to PYTHON-MOCK-2. Remove PYTHON-NOSE. Add PYTHON-PYTEST-BOOTSTRAP and PYTHON-PYTEST-RUNNER. [properties]: Declare python2 variant. * gnu/packages/python.scm (python-flake8)[propagated-inputs]: Add PYTHON2-ENUM and PYTHON2-CONFIGPARSER.
* gnu: Add python2-enum.Marius Bakke2017-10-19
| | | | * gnu/packages/python.scm (python2-enum): New variable.
* gnu: Fix pytest dependency cycle.Marius Bakke2017-10-19
| | | | | * gnu/packages/python.scm (python-traceback2, python-linecache2)[native-inputs]: Use PYTHON-PBR-MINIMAL instead of PYTHON-PBR.
* gnu: python-mock@2: Add dependency on python-six.Marius Bakke2017-10-19
| | | | * gnu/packages/python.scm (python-mock-2)[propagated-inputs]: Add PYTHON-SIX.
* gnu: python-mccabe: Update to 0.6.1.Marius Bakke2017-10-19
| | | | * gnu/packages/python.scm (python-mccabe): Update to 0.6.1.
* gnu: python-pyflakes: Update to 1.5.0.Marius Bakke2017-10-19
| | | | * gnu/packages/python.scm (python-pyflakes): Update to 1.5.0.
* gnu: python-pytest: Update to 3.2.3.Marius Bakke2017-10-19
| | | | | | | * gnu/packages/python.scm (python-pytest): Update to 3.2.3. [native-inputs]: Add PYTHON-SETUPTOOLS-SCM. (python-pytest)[native-inputs]: Likewise. (python2-pytest)[native-inputs]: Remove PYTHON2-ENUM34.
* gnu: python-setuptools-scm: Update to 1.15.6.Marius Bakke2017-10-19
| | | | * gnu/packages/python.scm (python-setuptools-scm): Update to 1.15.6.
* gnu: python-pytest: Add a minimal variant for bootstrapping.Marius Bakke2017-10-19
| | | | | | | | * gnu/packages/python.scm (python-pytest-bootstrap, python2-pytest-bootstrap): New variables. (python-six, python-hypothesis, python-pytest-runner, python-mccabe)[native-inputs]: Use PYTHON-PYTEST-BOOTSTRAP instead of PYTHON-PYTEST.
* gnu: Remove python-pytest@2.Marius Bakke2017-10-19
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-pytest): Update to 3.0.7. [source]: Move substitution to ... [arguments]: ... here. Incorporate phase from pytest-3.0. [native-inputs]: Add PYTHON-HYPOTHESIS. (python-pytest-3.0): Remove variable. (python2-pytest-3.0): Rename to ... (python2-pytest): ... this. [native-inputs]: Add PYTHON2-ENUM34. * gnu/packages/backup.scm (borg)[native-inputs]: Replace PYTHON-PYTEST-3.0 with PYTHON-PYTEST. * gnu/packages/calendar.scm (khal): Likewise. * gnu/packages/databases.scm (python-orator): Likewise. * gnu/packages/python.scm (python-sphinx-1.6, python-sphinx-1.5.3, python-pexpect, python-cryptography, python-pyopenssl, python-pytest-warnings, python-pytest-capturelog, python-pytest-catchlog, python-marshmallow, python-apispec, python-flasgger, python-pyjwt, python-grako, python-honcho): Likewise. * gnu/packages/web.scm (python-internetarchive): Likewise.
* gnu: python-six: Update to 1.11.0.Marius Bakke2017-10-19
| | | | * gnu/packages/python.scm (python-six): Update to 1.11.0.
* gnu: python-six: Really enable tests.Marius Bakke2017-10-19
| | | | * gnu/packages/python.scm (python-six)[arguments]: Override 'check' phase.
* gnu: python-py: Update to 1.4.34.Marius Bakke2017-10-19
| | | | * gnu/packages/python.scm (python-py, python2-py): Update to 1.4.34.
* gnu: python@3: Update to 3.6.3.Marius Bakke2017-10-19
| | | | | | | | | | | | | * gnu/packages/patches/python-3.5-fix-tests.patch: Rename to ... * gnu/packages/patches/python-3-fix-tests.patch: ... this. Adjust and disable more tests. * gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python.scm (python-2.7)[argument]: Patch '/bin/sh' in one more file. (python-3.5): Rename to ... (python-3.6): ... this. Update to 3.6.3. [source](patches): Remove obsolete patch, adjust to patch rename. (python-3): Use PYTHON-3.6.
* gnu: python@2: Update to 2.7.14.Marius Bakke2017-10-19
| | | | | | | | * gnu/packages/python.scm (python-2.7): Update to 2.7.14. [source]: Add patch to skip two new tests. Delete upstreamed patch. * gnu/packages/patches/python-2.7-adjust-tests.patch: New file. * gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* Revert "gnu: python-pyatspi: Update to 2.26.0."Tobias Geerinckx-Rice2017-10-18
| | | | | This reverts commit 629f33e233c34235ed74a1b12ac38a3f58a99eea, which breaks orca@3.26.0.
* gnu: f-seq: Fix location of commons-cli.jar.Ricardo Wurmus2017-10-18
| | | | | * gnu/packages/bioinformatics.scm (f-seq)[arguments]: Fix location of commons-cli.jar in the wrapper script.
* gnu: eog-plugins: Update to 3.26.1.Tobias Geerinckx-Rice2017-10-18
| | | | * gnu/packages/gnome.scm (eog-plugins): Update to 3.26.1.
* gnu: eog: Update to 3.26.1.Tobias Geerinckx-Rice2017-10-18
| | | | * gnu/packages/gnome.scm (eog): Update to 3.26.1.
* gnu: python-pyatspi: Update to 2.26.0.Tobias Geerinckx-Rice2017-10-18
| | | | * gnu/packages/gnome.scm (python-pyatspi): Update to 2.26.0.
* gnu: btrfs-progs: Update to 4.13.3.Tobias Geerinckx-Rice2017-10-18
| | | | * gnu/packages/linux.scm (btrfs-progs): Update to 4.13.3.
* gnu: hplip: Update to 3.17.10.Tobias Geerinckx-Rice2017-10-18
| | | | * gnu/packages/cups.scm (hplip): Update to 3.17.10.
* gnu: mailutils: Update to 3.3.Ludovic Courtès2017-10-18
| | | | | | * gnu/packages/mail.scm (mailutils): Update to 3.3. [arguments]: Rename 'pre-build' phase to 'prepare-test-suite', and move after 'check'. Set 'HOME', and create ~/.mh_profile.
* gnu: perl-crypt-random-source: Use 'perl-license'.Ludovic Courtès2017-10-18
| | | | | * gnu/packages/crypto.scm (perl-crypt-random-source)[license]: Change to LICENSE:PERL-LICENSE.
* gnu: Add atool.Stefan Reichör2017-10-18
| | | | | | * gnu/packages/compression.scm (atool): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: mupdf: Fix CVE-2017-15587.Marius Bakke2017-10-18
| | | | | | * gnu/packages/patches/mupdf-CVE-2017-15587.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (mupdf)[source](patches): Use it.
* gnu: python-protobuf: Update to 3.4.0.Ricardo Wurmus2017-10-18
| | | | * gnu/packages/protobuf.scm (python-protobuf): Update to 3.4.0.
* gnu: Add protobuf-c.Ricardo Wurmus2017-10-18
| | | | * gnu/packages/protobuf.scm (protobuf-c): New variable.
* gnu: protobuf: Update to 3.4.1.Ricardo Wurmus2017-10-18
| | | | * gnu/packages/protobuf.scm (protobuf): Update to 3.4.1.
* gnu: nginx: Update to 1.12.2.Marius Bakke2017-10-17
| | | | * gnu/packages/web.scm (nginx): Update to 1.12.2.
* gnu: rofi: Update to 1.4.2.Marius Bakke2017-10-17
| | | | * gnu/packages/xdisorg.scm (rofi): Update to 1.4.2.
* gnu: r-tidyr: Update to 0.7.2.Ricardo Wurmus2017-10-17
| | | | * gnu/packages/statistics.scm (r-tidyr): Update to 0.7.2.
* gnu: r-tidyselect: Update to 0.2.2.Ricardo Wurmus2017-10-17
| | | | * gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.2.
* gnu: r-rcpparmadillo: Update to 0.8.100.1.0.Ricardo Wurmus2017-10-17
| | | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.100.1.0. [native-inputs]: Add r-knitr.
* gnu: r-data-table: Update to 1.10.4-2.Ricardo Wurmus2017-10-17
| | | | * gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-2.
* gnu: r-chron: Update to 2.3-51.Ricardo Wurmus2017-10-17
| | | | * gnu/packages/statistics.scm (r-chron): Update to 2.3-51.
* gnu: r-dplyr: Update to 0.7.4.Ricardo Wurmus2017-10-17
| | | | * gnu/packages/statistics.scm (r-dplyr): Update to 0.7.4.
* gnu: r-curl: Update to 3.0.Ricardo Wurmus2017-10-17
| | | | * gnu/packages/web.scm (r-curl): Update to 3.0.
* gnu: axoloti-runtime: Update home page.Ricardo Wurmus2017-10-17
| | | | | * gnu/packages/axoloti.scm (axoloti-runtime)[home-page]: Use redirection target URL.
* gnu: Add Axoloti.Ricardo Wurmus2017-10-17
| | | | | | | * gnu/packages/axoloti.scm: New file. * gnu/packages/patches/libusb-for-axoloti.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch. (GNU_SYSTEM_MODULES): Add module.
* gnu: java-jgit: Include properties files.Ricardo Wurmus2017-10-17
| | | | | | | * gnu/packages/version-control.scm (java-jgit)[arguments]: Add phase "add-properties". (java-jgit-4.2)[arguments]: Move modification of phases into substitute-keyword-arguments clause.
* gnu: guix: Fix content hash.Ludovic Courtès2017-10-17
| | | | | | | | Fixes a mistake in bb4b9f7bf3d3c465823cd6d261c92fa90f9f97aa, which was due to the present of a hard link in my source tree, which confused 'git-predicate'... * gnu/packages/package-management.scm (guix)[source]: Fix content hash.
* gnu: perf: Find 'tips.txt'.Ludovic Courtès2017-10-17
| | | | | * gnu/packages/linux.scm (perf)[arguments]: Use "prefix", not "DESTDIR". This allows 'perf report' to find 'tips.txt'.
* gnu: perf: Add dependency on libunwind and libnuma.Ludovic Courtès2017-10-17
| | | | * gnu/packages/linux.scm (perf)[inputs]: Add NUMACTL and LIBUNWIND.
* gnu: guix: Update development snapshot.Ludovic Courtès2017-10-17
| | | | * gnu/packages/package-management.scm (guix): Update to 357ab93.
* gnu: Add python2-py2neo.Roel Janssen2017-10-17
| | | | * gnu/packages/python.scm (python2-py2neo): New variable.
* gnu: Add python2-neo4j-driver.Roel Janssen2017-10-17
| | | | * gnu/packages/python.scm (python2-neo4j-driver): New variable.
* gnu: wpa-supplicant: Fix "KRACK" key reinstallation attacks [security fixes].Leo Famulari2017-10-16
| | | | | | | | | | | | | | | | Fixes CVE-2017-{13078,13079,13080,13081,13082,13087,13088}. See these announcements for more information: https://w1.fi/security/2017-1/wpa-packet-number-reuse-with-replayed-messages.txt https://www.krackattacks.com/ * gnu/packages/patches/wpa-supplicant-CVE-2017-13082.patch, gnu/packages/patches/wpa-supplicant-fix-key-reuse.patch, gnu/packages/patches/wpa-supplicant-fix-nonce-reuse.patch gnu/packages/patches/wpa-supplicant-fix-zeroed-keys.patch, gnu/packages/patches/wpa-supplicant-krack-followups.patch: New files. * gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Use them. * gnu/local.mk (dist_patch_DATA): Add them.
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